Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0010549

Physical Location & Seq

Genomic Coordinates Reverse (-)

6324419 .. 6325711

Gene Structure 1293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1078000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAGTGCTGTGGGAGGCCAAACAGGAGCGACGCTCATTTGTCGAGAGAGGAAGAGGCAGAGATCGAGTCGAAGACGAGAGAGTACTTCGACGGAGTGACTCCCAAGCGTCACTCCAAACCTCAACGCAGTGAGTATTCGTCAAAGTATGTGGATGATTTGAAAAACGAAGACCAAATTCCTGAACTCGTTGAGTTCCATCGTCTCGAAAACGATTCGCAGAAAATAGTGGTGAATGGAAGTGGAGTTGGTGAGGAGTTTGTGGAGACAGACTACTACAAGGACCTGAACGACATTGACAAGCAACACCACACCACAGGAACTGGGTTCATCAAAGTGCAAAACAAAGGTAACAACAGTTACAATTTAGCACCGGATTCCGACACCGACGTCCATGCTTCTTGCCAGTGCAACCCAGCAACTAATGACTGGATCCCGGACGCTTCTGCTGCCAATGCGGTAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.44

Weight (kDa)

4.77

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010549)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g37870 FvH4_3g37870
malus_domestica	MD03G1078000.v1.1 MD11G1082600.v1.1
prunus_persica	Prupe.6G063000_v2.0.a1 Prupe.6G063000_v2.0.a1
pyrus_communis	pycom03g06220 pycom11g07070
rosa_chinensis	RchiOBHm_Chr5g0068081
rosa_laevigata	RLG00000035953
rosa_multiflora	Rmu_sc0000435.1_g000018
rosa_roxburghii	Rroxscaffold_1G00012530 Rroxscaffold_1G00013270
rosa_rugosa	Rorug05G0387700 Rorug05G0387800 Rorug05G0388100 Rorug05G0388200
rosa_samantha	Rh5AG446600 Rh5DG478500
rosa_wichuraiana	Rw5G041690 Rw5G041730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	389
AatII	GACGTC	1 cut(s)	393
AciI	CCGC	1 cut(s)	458
AclWI	GGATC	2 cut(s)	427, 440
AcsI	RAATTY	1 cut(s)	177
AcyI	GRCGYC	1 cut(s)	390
AfaI	GTAC	1 cut(s)	86
AgsI	TTSAA	1 cut(s)	163
Alw26I	GTCTC	2 cut(s)	209, 260
AlwI	GGATC	2 cut(s)	427, 440
AlwNI	CAGNNNCTG	1 cut(s)	323
AoxI	GGCC	1 cut(s)	17
ApeKI	GCWGC	1 cut(s)	449
ApoI	RAATTY	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	283
AsuC2I	CCSGG	1 cut(s)	437
AsuHPI	GGTGA	2 cut(s)	244, 263
AvaII	GGWCC	1 cut(s)	283
BamHI	GGATCC	1 cut(s)	432
BbsI	GAAGAC	2 cut(s)	80, 177
BbvI	GCAGC	1 cut(s)	436
BccI	CCATC	1 cut(s)	207
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BcnI	CCSGG	1 cut(s)	437
BcoDI	GTCTC	2 cut(s)	209, 260
BisI	GCNGC	1 cut(s)	450
BlsI	GCNGC	1 cut(s)	451
BmcAI	AGTACT	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	437
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	434
BmrFI	CCNGG	1 cut(s)	437
BmrI	ACTGGG	1 cut(s)	333
BmuI	ACTGGG	1 cut(s)	333
BpiI	GAAGAC	2 cut(s)	80, 177
BplI	GAGNNNNNCTC	2 cut(s)	19, 51
BpuMI	CCSGG	1 cut(s)	437
BsaHI	GRCGYC	1 cut(s)	390
BsaWI	WCCGGW	1 cut(s)	373
Bse1I	ACTGG	3 cut(s)	328, 406, 434
BseGI	GGATG	1 cut(s)	160
BseNI	ACTGG	3 cut(s)	328, 406, 434
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	1 cut(s)	436
BseYI	CCCAGC	1 cut(s)	415
BshFI	GGCC	1 cut(s)	19
BsiSI	CCGG	2 cut(s)	374, 437
BsmAI	GTCTC	2 cut(s)	209, 260
BsmBI	CGTCTC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	63, 432
BspACI	CCGC	1 cut(s)	458
BspANI	GGCC	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	434
BspPI	GGATC	2 cut(s)	427, 440
BsrI	ACTGG	3 cut(s)	328, 406, 434
BssMI	GATC	2 cut(s)	63, 432
BssNI	GRCGYC	1 cut(s)	390
Bst4CI	ACNGT	1 cut(s)	359
Bst6I	CTCTTC	1 cut(s)	48
BstACI	GRCGYC	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	160
BstKTI	GATC	2 cut(s)	66, 435
BstMAI	GTCTC	2 cut(s)	209, 260
BstMBI	GATC	2 cut(s)	63, 432
BstMWI	GCNNNNNNNGC	2 cut(s)	449, 455
BstSCI	CCNGG	1 cut(s)	435
BstV1I	GCAGC	1 cut(s)	436
BstV2I	GAAGAC	2 cut(s)	80, 177
BstX2I	RGATCY	1 cut(s)	432
BstYI	RGATCY	1 cut(s)	432
BsuRI	GGCC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	160
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	2 cut(s)	136, 413
CaiI	CAGNNNCTG	1 cut(s)	323
Cfr13I	GGNCC	1 cut(s)	283
CseI	GACGC	3 cut(s)	41, 98, 449
Csp6I	GTAC	1 cut(s)	85
CspCI	CAANNNNNGTGG	2 cut(s)	132, 167
CviAII	CATG	1 cut(s)	395
CviJI	RGCY	1 cut(s)	19
CviKI_1	RGCY	1 cut(s)	19
CviQI	GTAC	1 cut(s)	85
DpnI	GATC	2 cut(s)	65, 434
DpnII	GATC	2 cut(s)	63, 432
DrdI	GACNNNNNNGTC	1 cut(s)	389
DseDI	GACNNNNNNGTC	1 cut(s)	389
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	283
EcoO109I	RGGNCCY	1 cut(s)	283
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	1 cut(s)	398
FaiI	YATR	2 cut(s)	150, 396
FatI	CATG	1 cut(s)	394
Fnu4HI	GCNGC	1 cut(s)	450
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	1 cut(s)	450
GluI	GCNGC	1 cut(s)	450
GsaI	CCCAGC	1 cut(s)	419
HaeIII	GGCC	1 cut(s)	19
HapII	CCGG	2 cut(s)	374, 437
HgaI	GACGC	3 cut(s)	41, 98, 449
Hin1I	GRCGYC	1 cut(s)	390
Hin1II	CATG	1 cut(s)	398
HinfI	GANTC	4 cut(s)	68, 100, 215, 377
HpaII	CCGG	2 cut(s)	374, 437
HphI	GGTGA	2 cut(s)	244, 263
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	3 cut(s)	45, 182, 206
Hpy99I	CGWCG	3 cut(s)	35, 95, 392
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	2 cut(s)	340, 411
HpyF10VI	GCNNNNNNNGC	2 cut(s)	449, 455
HpySE526I	ACGT	1 cut(s)	390
Hsp92I	GRCGYC	1 cut(s)	390
Hsp92II	CATG	1 cut(s)	398
Kzo9I	GATC	2 cut(s)	63, 432
LmnI	GCTCC	1 cut(s)	27
Lsp1109I	GCAGC	1 cut(s)	436
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	4 cut(s)	97, 110, 350, 359
MalI	GATC	2 cut(s)	65, 434
MboI	GATC	2 cut(s)	63, 432
MboII	GAAGA	3 cut(s)	65, 85, 182
MflI	RGATCY	1 cut(s)	432
MluCI	AATT	2 cut(s)	177, 364
MlyI	GAGTC	2 cut(s)	77, 94
MmeI	TCCRAC	1 cut(s)	405
MnlI	CCTC	5 cut(s)	9, 43, 49, 132, 247
MseI	TTAA	1 cut(s)	466
MslI	CAYNNNNRTG	1 cut(s)	335
MspI	CCGG	2 cut(s)	374, 437
MspR9I	CCNGG	1 cut(s)	437
MwoI	GCNNNNNNNGC	2 cut(s)	449, 455
NciI	CCSGG	1 cut(s)	437
NdeII	GATC	2 cut(s)	63, 432
NlaIII	CATG	1 cut(s)	398
NlaIV	GGNNCC	1 cut(s)	434
NmuCI	GTSAC	2 cut(s)	97, 110
PfeI	GAWTC	2 cut(s)	215, 377
PfoI	TCCNGGA	1 cut(s)	435
PkrI	GCNGC	1 cut(s)	451
PleI	GAGTC	2 cut(s)	76, 94
PpsI	GAGTC	2 cut(s)	76, 94
PpuMI	RGGWCCY	1 cut(s)	283
Psp5II	RGGWCCY	1 cut(s)	283
PspFI	CCCAGC	1 cut(s)	415
PspN4I	GGNNCC	1 cut(s)	434
PspPI	GGNCC	1 cut(s)	283
PspPPI	RGGWCCY	1 cut(s)	283
PstNI	CAGNNNCTG	1 cut(s)	323
PsuI	RGATCY	1 cut(s)	432
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	335
SaqAI	TTAA	1 cut(s)	466
SatI	GCNGC	1 cut(s)	450
Sau3AI	GATC	2 cut(s)	63, 432
Sau96I	GGNCC	1 cut(s)	283
ScaI	AGTACT	1 cut(s)	86
SchI	GAGTC	2 cut(s)	77, 94
ScrFI	CCNGG	1 cut(s)	437
SetI	ASST	5 cut(s)	124, 288, 352, 393, 466
SinI	GGWCC	1 cut(s)	283
SmiMI	CAYNNNNRTG	1 cut(s)	335
Sse9I	AATT	2 cut(s)	177, 364
SsiI	CCGC	1 cut(s)	458
StyD4I	CCNGG	1 cut(s)	435
TaaI	ACNGT	1 cut(s)	359
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	5 cut(s)	44, 66, 71, 90, 207
TasI	AATT	2 cut(s)	177, 364
TatI	WGTACW	1 cut(s)	84
TfiI	GAWTC	2 cut(s)	215, 377
Tru1I	TTAA	1 cut(s)	466
Tru9I	TTAA	1 cut(s)	466
TscAI	CASTG	2 cut(s)	136, 413
TseFI	GTSAC	2 cut(s)	97, 110
TseI	GCWGC	1 cut(s)	449
Tsp45I	GTSAC	2 cut(s)	97, 110
TspDTI	ATGAA	1 cut(s)	319
TspGWI	ACGGA	1 cut(s)	108
TspRI	CASTG	2 cut(s)	136, 413
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	1 cut(s)	177
ZraI	GACGTC	1 cut(s)	391
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.