pycom11g07070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0010549
Physical Location & Seq
Reverse (-)
5370375 .. 5371763
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g07070.3

Sequence Viewer

Length: 501 bp
ATGGAGTGCTGTGGGAGGCCAAACAGGAGTGACGCTCATTTGTCGAGAGAGGAAGAGGCAGAGATCGAGTCCAAGACGAGAGAGTACTTCGATGGAGTGACTCCCAAGCATCACTCCAAACCTCAACGCAGTGAGTATTCATCAAAGTATGTGGACGATTTGAAAAATAATGACGAAATTCCCGAACTTGTTGAGTTCCACCGTCTCGAAAGCGATTCTCAGAAGATAGCGGTGAACGGAAGTGAGGTTGGTGAGGAGTTTGTGGAGACAGACTACTACAAGGACCTGAACGATACTGACAAGCAGCACCACACCACGGGAACTGGGTTCATCAAAATGCCCAACAAAAGCGACAACCGCTACAGTTTGGCACCGGATTCCGACACCGACGTCCATGCCTCTGGCCAGTGCAACCCAGCAACTAATGACTGGATCCCAGATGCTTCTGCTGCCAATACAGTGGCTTTTGATACAGGCAAGCCAAGGAGAAGTGACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.76

Weight (kDa)

4.82

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 389
AatII GACGTC 1 cut(s) 393
AccB1I GGYRCC 1 cut(s) 370
AciI CCGC 2 cut(s) 230, 358
AclWI GGATC 2 cut(s) 427, 440
AcoI YGGCCR 1 cut(s) 403
AcsI RAATTY 1 cut(s) 177
AcyI GRCGYC 1 cut(s) 390
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 316
AgsI TTSAA 1 cut(s) 163
Alw26I GTCTC 2 cut(s) 209, 260
AlwI GGATC 2 cut(s) 427, 440
AoxI GGCC 2 cut(s) 17, 403
ApeKI GCWGC 2 cut(s) 304, 449
ApoI RAATTY 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 283
AsuHPI GGTGA 2 cut(s) 244, 263
AvaII GGWCC 1 cut(s) 283
BalI TGGCCA 1 cut(s) 405
BamHI GGATCC 1 cut(s) 432
BanI GGYRCC 1 cut(s) 370
BbvI GCAGC 2 cut(s) 316, 436
BccI CCATC 1 cut(s) 86
BcgI CGANNNNNNTGC 2 cut(s) 377, 411
BcoDI GTCTC 2 cut(s) 209, 260
BfmI CTRYAG 1 cut(s) 361
BisI GCNGC 2 cut(s) 305, 450
BlsI GCNGC 2 cut(s) 306, 451
BmcAI AGTACT 1 cut(s) 86
Bme18I GGWCC 1 cut(s) 283
BmgT120I GGNCC 1 cut(s) 283
BmiI GGNNCC 2 cut(s) 372, 434
BmrI ACTGGG 1 cut(s) 333
BmsI GCATC 2 cut(s) 118, 430
BmuI ACTGGG 1 cut(s) 333
BplI GAGNNNNNCTC 2 cut(s) 19, 51
BsaHI GRCGYC 1 cut(s) 390
BsaJI CCNNGG 2 cut(s) 315, 482
BsaWI WCCGGW 1 cut(s) 373
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse1I ACTGG 3 cut(s) 328, 406, 434
BseDI CCNNGG 2 cut(s) 315, 482
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMII CTCAG 1 cut(s) 233
BseNI ACTGG 3 cut(s) 328, 406, 434
BseRI GAGGAG 1 cut(s) 269
BseXI GCAGC 2 cut(s) 316, 436
BseYI CCCAGC 1 cut(s) 415
BshFI GGCC 2 cut(s) 19, 405
BshNI GGYRCC 1 cut(s) 370
BsiSI CCGG 1 cut(s) 374
BslI CCNNNNNNNGG 1 cut(s) 316
BsmAI GTCTC 2 cut(s) 209, 260
BsmBI CGTCTC 1 cut(s) 209
BsnI GGCC 2 cut(s) 19, 405
Bsp143I GATC 2 cut(s) 63, 432
BspACI CCGC 2 cut(s) 230, 358
BspANI GGCC 2 cut(s) 19, 405
BspCNI CTCAG 1 cut(s) 232
BspLI GGNNCC 2 cut(s) 372, 434
BspPI GGATC 2 cut(s) 427, 440
BspT107I GGYRCC 1 cut(s) 370
BsrI ACTGG 3 cut(s) 328, 406, 434
BssECI CCNNGG 2 cut(s) 315, 482
BssMI GATC 2 cut(s) 63, 432
BssNI GRCGYC 1 cut(s) 390
BssT1I CCWWGG 1 cut(s) 482
Bst4CI ACNGT 3 cut(s) 203, 365, 460
Bst6I CTCTTC 1 cut(s) 48
BstACI GRCGYC 1 cut(s) 390
BstC8I GCNNGC 1 cut(s) 479
BstDEI CTNAG 1 cut(s) 219
BstDSI CCRYGG 1 cut(s) 315
BstKTI GATC 2 cut(s) 66, 435
BstMAI GTCTC 2 cut(s) 209, 260
BstMBI GATC 2 cut(s) 63, 432
BstMWI GCNNNNNNNGC 2 cut(s) 357, 449
BstSFI CTRYAG 1 cut(s) 361
BstV1I GCAGC 2 cut(s) 316, 436
BstX2I RGATCY 1 cut(s) 432
BstXI CCANNNNNNTGG 2 cut(s) 401, 460
BstYI RGATCY 1 cut(s) 432
BsuRI GGCC 2 cut(s) 19, 405
BtgI CCRYGG 1 cut(s) 315
BtsI GCAGTG 1 cut(s) 136
BtsIMutI CAGTG 3 cut(s) 136, 413, 465
Cac8I GCNNGC 1 cut(s) 479
Cfr13I GGNCC 1 cut(s) 283
CseI GACGC 1 cut(s) 41
Csp6I GTAC 1 cut(s) 85
CspCI CAANNNNNGTGG 2 cut(s) 132, 167
CviAII CATG 1 cut(s) 395
CviJI RGCY 4 cut(s) 19, 405, 464, 481
CviKI_1 RGCY 4 cut(s) 19, 405, 464, 481
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 1 cut(s) 219
DpnI GATC 2 cut(s) 65, 434
DpnII GATC 2 cut(s) 63, 432
DrdI GACNNNNNNGTC 1 cut(s) 389
DseDI GACNNNNNNGTC 1 cut(s) 389
EaeI YGGCCR 1 cut(s) 403
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 482
Eco47I GGWCC 1 cut(s) 283
EcoO109I RGGNCCY 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 482
ErhI CCWWGG 1 cut(s) 482
Esp3I CGTCTC 1 cut(s) 209
FaeI CATG 1 cut(s) 398
FaiI YATR 2 cut(s) 150, 396
FatI CATG 1 cut(s) 394
Fnu4HI GCNGC 2 cut(s) 305, 450
Fsp4HI GCNGC 2 cut(s) 305, 450
GluI GCNGC 2 cut(s) 305, 450
GsaI CCCAGC 1 cut(s) 419
HaeIII GGCC 2 cut(s) 19, 405
HapII CCGG 1 cut(s) 374
HgaI GACGC 1 cut(s) 41
Hin1I GRCGYC 1 cut(s) 390
Hin1II CATG 1 cut(s) 398
HinfI GANTC 4 cut(s) 68, 100, 215, 377
HpaII CCGG 1 cut(s) 374
HphI GGTGA 2 cut(s) 244, 263
Hpy166II GTNNAC 2 cut(s) 154, 235
Hpy188I TCNGA 2 cut(s) 222, 382
Hpy188III TCNNGA 3 cut(s) 45, 182, 206
Hpy8I GTNNAC 2 cut(s) 154, 235
Hpy99I CGWCG 1 cut(s) 392
HpyCH4III ACNGT 3 cut(s) 203, 365, 460
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 1 cut(s) 411
HpyF10VI GCNNNNNNNGC 2 cut(s) 357, 449
HpyF3I CTNAG 1 cut(s) 219
HpySE526I ACGT 1 cut(s) 390
Hsp92I GRCGYC 1 cut(s) 390
Hsp92II CATG 1 cut(s) 398
Kzo9I GATC 2 cut(s) 63, 432
Lsp1109I GCAGC 2 cut(s) 316, 436
LweI GCATC 2 cut(s) 118, 430
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 3 cut(s) 29, 97, 491
MalI GATC 2 cut(s) 65, 434
MboI GATC 2 cut(s) 63, 432
MboII GAAGA 2 cut(s) 65, 235
MflI RGATCY 1 cut(s) 432
MlsI TGGCCA 1 cut(s) 405
MluCI AATT 2 cut(s) 177, 496
MluNI TGGCCA 1 cut(s) 405
MlyI GAGTC 2 cut(s) 77, 94
MmeI TCCRAC 1 cut(s) 405
MnlI CCTC 7 cut(s) 9, 43, 49, 132, 238, 247, 409
Mox20I TGGCCA 1 cut(s) 405
MscI TGGCCA 1 cut(s) 405
MslI CAYNNNNRTG 1 cut(s) 335
Msp20I TGGCCA 1 cut(s) 405
MspI CCGG 1 cut(s) 374
MwoI GCNNNNNNNGC 2 cut(s) 357, 449
NdeII GATC 2 cut(s) 63, 432
NlaIII CATG 1 cut(s) 398
NlaIV GGNNCC 2 cut(s) 372, 434
NmuCI GTSAC 3 cut(s) 29, 97, 491
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PfeI GAWTC 2 cut(s) 215, 377
PkrI GCNGC 2 cut(s) 306, 451
PleI GAGTC 2 cut(s) 76, 94
PpsI GAGTC 2 cut(s) 76, 94
PpuMI RGGWCCY 1 cut(s) 283
Psp5II RGGWCCY 1 cut(s) 283
PspFI CCCAGC 1 cut(s) 415
PspN4I GGNNCC 2 cut(s) 372, 434
PspPI GGNCC 1 cut(s) 283
PspPPI RGGWCCY 1 cut(s) 283
PsuI RGATCY 1 cut(s) 432
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
RseI CAYNNNNRTG 1 cut(s) 335
SatI GCNGC 2 cut(s) 305, 450
Sau3AI GATC 2 cut(s) 63, 432
Sau96I GGNCC 1 cut(s) 283
ScaI AGTACT 1 cut(s) 86
SchI GAGTC 2 cut(s) 77, 94
SetI ASST 4 cut(s) 124, 249, 288, 393
SfaNI GCATC 2 cut(s) 118, 430
SfcI CTRYAG 1 cut(s) 361
SinI GGWCC 1 cut(s) 283
SmiMI CAYNNNNRTG 1 cut(s) 335
Sse9I AATT 2 cut(s) 177, 496
SsiI CCGC 2 cut(s) 230, 358
StyI CCWWGG 1 cut(s) 482
TaaI ACNGT 3 cut(s) 203, 365, 460
TaiI ACGT 1 cut(s) 393
TaqI TCGA 4 cut(s) 44, 66, 90, 207
TasI AATT 2 cut(s) 177, 496
TatI WGTACW 1 cut(s) 84
TfiI GAWTC 2 cut(s) 215, 377
TscAI CASTG 3 cut(s) 136, 413, 465
TseFI GTSAC 3 cut(s) 29, 97, 491
TseI GCWGC 2 cut(s) 304, 449
Tsp45I GTSAC 3 cut(s) 29, 97, 491
TspDTI ATGAA 2 cut(s) 129, 319
TspGWI ACGGA 1 cut(s) 252
TspRI CASTG 3 cut(s) 136, 413, 465
VpaK11BI GGWCC 1 cut(s) 283
XapI RAATTY 1 cut(s) 177
ZraI GACGTC 1 cut(s) 391
ZrmI AGTACT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.