Rorug05G0388100

Plant protein of unknown function (DUF641)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002215
Physical Location & Seq
Forward (+)
52720142 .. 52723121
2980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0388100.1

Sequence Viewer

Length: 462 bp
ATGTGCGCCGTGAAACTTGTATTTTTAAATAATAAAGCAAAGCATACAGTGAAAGCATGCCGTGTTTGTTATTGTGCAAATGTTTATTACGACGCATTTGGAGTATTGCCGTCTTTGTGTAATCAAAACAGCTACGAAATTTGGCCAAAAGTTAAATCTCCTTCTCAGTCCATCCCTCACTCTTATCTTTCTCTCTCCGTCGAGAAATCTCAAACCATTACCAGCTCCTCCGCCAAAATCAAGTCACTCTCTGTCTCCGAGATCACACCCCCTCAGCTTTCCAACCTCTCAATTGTCAAATCTGCCTCCACCTTCTCCTTCGCCTCCGCCTTCTCTAGTGAGCCATCGGAGGCGAAGCCCCAGAAGTTCGGTGTCTCCGACAATATCAGAGACTTTGTCAAGGGACTCACTTCTGAATTTTTTGATTCGGTTCTTCAAATGCGCACCGTTTCGATCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009959 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF641

Protein Analysis

153

Amino Acids

16.81

Weight (kDa)

8.98

Isoelectric Point (pI)

49.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 443
AciI CCGC 2 cut(s) 231, 327
AcoI YGGCCR 1 cut(s) 143
AcsI RAATTY 2 cut(s) 138, 416
AgsI TTSAA 1 cut(s) 437
AluBI AGCT 3 cut(s) 132, 225, 277
AluI AGCT 3 cut(s) 132, 225, 277
Alw26I GTCTC 3 cut(s) 259, 379, 384
AoxI GGCC 1 cut(s) 143
ApoI RAATTY 2 cut(s) 138, 416
AspLEI GCGC 2 cut(s) 8, 444
BalI TGGCCA 1 cut(s) 145
BbvCI CCTCAGC 1 cut(s) 273
BccI CCATC 2 cut(s) 179, 352
BceAI ACGGC 2 cut(s) 45, 94
BcoDI GTCTC 3 cut(s) 259, 379, 384
BfaI CTAG 1 cut(s) 336
Bpu10I CCTNAGC 1 cut(s) 273
BseGI GGATG 1 cut(s) 171
BseMII CTCAG 2 cut(s) 179, 287
BseRI GAGGAG 1 cut(s) 217
Bsh1285I CGRYCG 1 cut(s) 456
BshFI GGCC 1 cut(s) 145
BsiEI CGRYCG 1 cut(s) 456
BslFI GGGAC 1 cut(s) 417
BsmAI GTCTC 3 cut(s) 259, 379, 384
BsmFI GGGAC 1 cut(s) 417
BsnI GGCC 1 cut(s) 145
Bsp143I GATC 2 cut(s) 261, 453
BspACI CCGC 2 cut(s) 231, 327
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 2 cut(s) 178, 286
BssMI GATC 2 cut(s) 261, 453
Bst4CI ACNGT 2 cut(s) 49, 448
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 2 cut(s) 165, 273
BstF5I GGATG 1 cut(s) 171
BstHHI GCGC 2 cut(s) 8, 444
BstKTI GATC 2 cut(s) 264, 456
BstMAI GTCTC 3 cut(s) 259, 379, 384
BstMBI GATC 2 cut(s) 261, 453
BstMCI CGRYCG 1 cut(s) 456
BstNSI RCATGY 1 cut(s) 60
BsuRI GGCC 1 cut(s) 145
BtsCI GGATG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 54
Cac8I GCNNGC 1 cut(s) 58
CfoI GCGC 2 cut(s) 8, 444
CseI GACGC 1 cut(s) 101
CviAII CATG 1 cut(s) 57
CviJI RGCY 6 cut(s) 132, 145, 225, 277, 343, 358
CviKI_1 RGCY 6 cut(s) 132, 145, 225, 277, 343, 358
DdeI CTNAG 2 cut(s) 165, 273
DpnI GATC 2 cut(s) 263, 455
DpnII GATC 2 cut(s) 261, 453
DraI TTTAAA 1 cut(s) 27
EaeI YGGCCR 1 cut(s) 143
EciI GGCGGA 2 cut(s) 220, 316
FaeI CATG 1 cut(s) 60
FaiI YATR 2 cut(s) 45, 58
FaqI GGGAC 1 cut(s) 417
FatI CATG 1 cut(s) 56
FokI GGATG 1 cut(s) 158
FspAI RTGCGCAY 1 cut(s) 443
FspBI CTAG 1 cut(s) 336
FspI TGCGCA 1 cut(s) 443
GlaI GCGC 2 cut(s) 7, 443
HaeIII GGCC 1 cut(s) 145
HgaI GACGC 1 cut(s) 101
HhaI GCGC 2 cut(s) 8, 444
Hin1II CATG 1 cut(s) 60
Hin6I GCGC 2 cut(s) 6, 442
HinP1I GCGC 2 cut(s) 6, 442
HinfI GANTC 2 cut(s) 405, 425
Hpy188I TCNGA 5 cut(s) 259, 349, 379, 389, 415
Hpy188III TCNNGA 1 cut(s) 202
Hpy99I CGWCG 2 cut(s) 95, 203
HpyAV CCTTC 4 cut(s) 171, 322, 328, 340
HpyCH4III ACNGT 2 cut(s) 49, 448
HpyCH4V TGCA 1 cut(s) 77
HpyF3I CTNAG 2 cut(s) 165, 273
Hsp92II CATG 1 cut(s) 60
HspAI GCGC 2 cut(s) 6, 442
Kzo9I GATC 2 cut(s) 261, 453
LmnI GCTCC 1 cut(s) 230
LpnPI CCDG 2 cut(s) 235, 374
MaeI CTAG 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 243
MalI GATC 2 cut(s) 263, 455
MboI GATC 2 cut(s) 261, 453
MboII GAAGA 1 cut(s) 425
MfeI CAATTG 1 cut(s) 291
MlsI TGGCCA 1 cut(s) 145
MluCI AATT 3 cut(s) 138, 291, 416
MluNI TGGCCA 1 cut(s) 145
MlyI GAGTC 1 cut(s) 399
MmeI TCCRAC 2 cut(s) 306, 402
MnlI CCTC 7 cut(s) 186, 238, 282, 296, 316, 334, 343
Mox20I TGGCCA 1 cut(s) 145
MscI TGGCCA 1 cut(s) 145
MseI TTAA 2 cut(s) 26, 153
Msp20I TGGCCA 1 cut(s) 145
MunI CAATTG 1 cut(s) 291
NdeII GATC 2 cut(s) 261, 453
NlaIII CATG 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 243
NsbI TGCGCA 1 cut(s) 443
NspI RCATGY 1 cut(s) 60
PaeI GCATGC 1 cut(s) 60
PcsI WCGNNNNNNNCGW 1 cut(s) 375
PfeI GAWTC 1 cut(s) 425
PflFI GACNNNGTC 1 cut(s) 395
Ple19I CGATCG 1 cut(s) 456
PleI GAGTC 1 cut(s) 399
PpsI GAGTC 1 cut(s) 399
PsyI GACNNNGTC 1 cut(s) 395
PvuI CGATCG 1 cut(s) 456
SaqAI TTAA 2 cut(s) 26, 153
Sau3AI GATC 2 cut(s) 261, 453
SchI GAGTC 1 cut(s) 399
SetI ASST 5 cut(s) 134, 227, 279, 288, 314
SphI GCATGC 1 cut(s) 60
Sse9I AATT 3 cut(s) 138, 291, 416
SsiI CCGC 2 cut(s) 231, 327
SspMI CTAG 1 cut(s) 336
TaaI ACNGT 2 cut(s) 49, 448
TaqI TCGA 3 cut(s) 201, 452, 456
TasI AATT 3 cut(s) 138, 291, 416
TfiI GAWTC 1 cut(s) 425
Tru1I TTAA 2 cut(s) 26, 153
Tru9I TTAA 2 cut(s) 26, 153
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 1 cut(s) 243
Tsp45I GTSAC 1 cut(s) 243
TspGWI ACGGA 1 cut(s) 187
TspRI CASTG 1 cut(s) 54
Tth111I GACNNNGTC 1 cut(s) 395
XapI RAATTY 2 cut(s) 138, 416
XceI RCATGY 1 cut(s) 60
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.