Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002215

Physical Location & Seq

Genomic Coordinates Reverse (-)

73304811 .. 73306097

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G041680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGAGATGGAGATGGCAATGTGGGAAGTGTTTGACGCCGTTTCGGCAATGAAGAAGGCCTACGCTGGCCTGCAGAAGGCACATAGCCCTTGGGACCCGGAGAAGTTAAGGGTGGCCGACATTGCGGTGGTGGGGGAGCTGAGGAAGCTTGGAGTGTTGAGGGAGAGGTTTAGGAGGAGATGTTCTGGCGGTGGAGGTCAAAGAGGTGGAAGAGCGGTGGCGGGGGGTACACTGAGGGAGGTGGTGGCACCATATGAGGCGACCGTGGAGGAGCTGAAGAAGGAGGTAAAGGCTAAGGAAGTAGAGGTTGATAACCTCAAGGAAAAGCTCAGTAGTGTAGTTAATGCCTCCAATGGGAATAATGGCAAGAAGGGCAGATCTATCTCAAGGAGGAAGGTAGGTTGCAGTCAACTTCAAGTTGTAGCTGCTCCAGCACCGGATCTGTTTGAGGCAACAATGAGCCACGTGAAAGAGGCATCAAAGTCCTTCACTTTATTGCTCCTCTCTCTCATGCGTGCCTCTCATTGGGACATTGCCGCAGCTGTGCGTTCCATTGAAGCTGCCACTGTCACTGCCACTACCACAACAGCTATTAACACATCCTCCATTCTCACAACGACCCAGAATGGCAGTGCCAAGTATGCTCTCCAGTCCTACATTTCCAGCAAAATGTTCCAAGGCTTTGATCACGAGACATTCTACATGGACGGTAGCCTCTCCTCGCTTCTCAACCCAGATCAGTACCGCCGTGATTGCTTCACTCAATACCATGACATGAAGGCCATGGATCCTGCCGAGCTTCTTGGAATATTGCCCACGTGTCACTTTGGCAAGTTCTGCTCAAACAAGTACTTGGCCATAATTCATCCCAAGATGGAAGAGTCATTGTTTGGAGACTTGGATCAGCGACGGCAGGTCTTAGATGGAAACCACCCCAGGAGTGAGTTTTACAGTCAGTTCTTGGGGATGGCTAAAGCAGTCTGGTTACTGCACTTGCTGGCCTTCTCTCTTGACCCAACACCTAGTCAATTTGAGGCTACTAGAGGTGCTGAGTTTCATCCACACTACATGGAAAGTGTTGTCAAGTTTTCGGGTGGGCGGGTTCCTTCGGGTCAGGTTGTCGGGTTTCCTGTAAGTCCTGGGTTCAAGCTTGGAAATGGGTCTATTATCAAGGCCAGAGTTTACCTAGTTTCGAGGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009959 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF641

Protein Analysis

400

Amino Acids

44.11

Weight (kDa)

9.11

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF641	PF04859	2 - 117	1.6e-33	Plant protein of unknown function (DUF641)
GIL1_IRKI_C	PF24994	344 - 395	1.7e-10	GIL1/IRKI C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58960 AT5G58960 AT5G58960
fragaria_vesca	FvH4_3g37820 FvH4_3g37850
malus_domestica	MD03G1078100.v1.1 MD11G1082800.v1.1
prunus_persica	Prupe.6G063100_v2.0.a1
pyrus_communis	pycom03g06240 pycom11g07090
rosa_chinensis	RchiOBHm_Chr5g0068001 RchiOBHm_Chr5g0068051 RchiOBHm_Chr5g0068071
rosa_laevigata	RLG00000035951 RLG00000035952
rosa_multiflora	Rmu_co8216896.1_g000001 Rmu_co8424771.1_g000001 Rmu_sc0000435.1_g000019 Rmu_sc0000435.1_g000025 Rmu_sc0000435.1_g000034
rosa_roxburghii	Rroxscaffold_1G00012550 Rroxscaffold_1G00012560 Rroxscaffold_1G00013280 Rroxscaffold_1G00013290
rosa_rugosa	Rorug05G0387200 Rorug05G0387600 Rorug05G0388100
rosa_samantha	Rh5AG446100 Rh5AG446300 Rh5AG446400 Rh5BG463600 Rh5BG464000 Rh5BG464300 Rh5CG485500 Rh5CG486000 Rh5CG486300 Rh5DG477600 Rh5DG478000 Rh5DG478300
rosa_wichuraiana	Rw5G041670 Rw5G041680 Rw5G041710 Rw5G041720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	904
AccB1I	GGYRCC	1 cut(s)	247
AccBSI	CCGCTC	1 cut(s)	215
AciI	CCGC	7 cut(s)	125, 189, 215, 221, 537, 745, 1099
AclWI	GGATC	4 cut(s)	447, 782, 795, 909
AcoI	YGGCCR	2 cut(s)	114, 855
AcuI	CTGAAG	1 cut(s)	296
AcvI	CACGTG	2 cut(s)	466, 819
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	3 cut(s)	229, 743, 851
AfiI	CCNNNNNNNGG	3 cut(s)	76, 354, 525
AflIII	ACRYGT	1 cut(s)	818
AgsI	TTSAA	3 cut(s)	416, 557, 1147
AhdI	GACNNNNNGTC	1 cut(s)	914
AjnI	CCWGG	2 cut(s)	935, 1138
AloI	GAACNNNNNNTCC	2 cut(s)	166, 198
Alw26I	GTCTC	2 cut(s)	686, 888
AlwI	GGATC	4 cut(s)	447, 782, 795, 909
AoxI	GGCC	7 cut(s)	57, 67, 114, 780, 855, 999, 1173
ApeKI	GCWGC	3 cut(s)	425, 539, 560
AspS9I	GGNCC	1 cut(s)	94
AsuC2I	CCSGG	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	94
BalI	TGGCCA	1 cut(s)	857
BamHI	GGATCC	1 cut(s)	787
BanI	GGYRCC	1 cut(s)	247
BarI	GAAGNNNNNNTAC	2 cut(s)	44, 76
BauI	CACGAG	1 cut(s)	689
BbrPI	CACGTG	2 cut(s)	466, 819
BbvCI	CCTCAGC	1 cut(s)	140
BbvI	GCAGC	3 cut(s)	412, 547, 551
BccI	CCATC	4 cut(s)	7, 868, 917, 961
BceAI	ACGGC	3 cut(s)	23, 732, 926
BciT130I	CCWGG	2 cut(s)	937, 1140
BclI	TGATCA	1 cut(s)	685
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	2 cut(s)	686, 888
BfaI	CTAG	3 cut(s)	1023, 1041, 1187
BfmI	CTRYAG	1 cut(s)	71
BfuAI	ACCTGC	1 cut(s)	904
BglI	GCCNNNNNGGC	1 cut(s)	44
BglII	AGATCT	1 cut(s)	377
BisI	GCNGC	4 cut(s)	426, 537, 540, 561
BlsI	GCNGC	4 cut(s)	427, 538, 541, 562
BmcAI	AGTACT	1 cut(s)	851
Bme1390I	CCNGG	3 cut(s)	98, 937, 1140
Bme18I	GGWCC	1 cut(s)	94
BmeRI	GACNNNNNGTC	1 cut(s)	914
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	5 cut(s)	95, 96, 249, 789, 1104
BmrFI	CCNGG	3 cut(s)	98, 937, 1140
BmsI	GCATC	1 cut(s)	485
BpmI	CTGGAG	2 cut(s)	414, 632
Bpu10I	CCTNAGC	2 cut(s)	140, 294
BpuEI	CTTGAG	2 cut(s)	302, 370
BpuMI	CCSGG	1 cut(s)	98
BsaAI	YACGTR	2 cut(s)	466, 819
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	6 cut(s)	89, 264, 676, 783, 935, 1139
BsaWI	WCCGGW	1 cut(s)	436
BsaXI	ACNNNNNCTCC	4 cut(s)	166, 196, 587, 617
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 354, 525
Bse1I	ACTGG	1 cut(s)	649
Bse3DI	GCAATG	4 cut(s)	24, 54, 120, 531
BseBI	CCWGG	2 cut(s)	937, 1140
BseDI	CCNNGG	6 cut(s)	89, 264, 676, 783, 935, 1139
BseGI	GGATG	4 cut(s)	599, 865, 972, 1057
BseLI	CCNNNNNNNGG	3 cut(s)	76, 354, 525
BseMI	GCAATG	4 cut(s)	24, 54, 120, 531
BseMII	CTCAG	4 cut(s)	131, 224, 343, 1041
BseNI	ACTGG	1 cut(s)	649
BseRI	GAGGAG	4 cut(s)	190, 284, 491, 709
BseXI	GCAGC	3 cut(s)	412, 547, 551
BsgI	GTGCAG	1 cut(s)	974
Bsh1285I	CGRYCG	1 cut(s)	264
BshFI	GGCC	7 cut(s)	59, 69, 116, 782, 857, 1001, 1175
BshNI	GGYRCC	1 cut(s)	247
BsiEI	CGRYCG	1 cut(s)	264
BsiSI	CCGG	2 cut(s)	98, 437
BslFI	GGGAC	2 cut(s)	107, 542
BslI	CCNNNNNNNGG	3 cut(s)	76, 354, 525
BsmAI	GTCTC	2 cut(s)	686, 888
BsmFI	GGGAC	2 cut(s)	107, 542
BsnI	GGCC	7 cut(s)	59, 69, 116, 782, 857, 1001, 1175
Bsp143I	GATC	6 cut(s)	377, 439, 685, 736, 787, 901
Bsp19I	CCATGG	1 cut(s)	783
BspACI	CCGC	7 cut(s)	125, 189, 215, 221, 537, 745, 1099
BspANI	GGCC	7 cut(s)	59, 69, 116, 782, 857, 1001, 1175
BspCNI	CTCAG	4 cut(s)	132, 225, 342, 1042
BspLI	GGNNCC	5 cut(s)	95, 96, 249, 789, 1104
BspMAI	CTGCAG	1 cut(s)	75
BspMI	ACCTGC	1 cut(s)	904
BspPI	GGATC	4 cut(s)	447, 782, 795, 909
BspQI	GCTCTTC	1 cut(s)	205
BspT107I	GGYRCC	1 cut(s)	247
BsrBI	CCGCTC	1 cut(s)	215
BsrDI	GCAATG	4 cut(s)	24, 54, 120, 531
BsrI	ACTGG	1 cut(s)	649
BssECI	CCNNGG	6 cut(s)	89, 264, 676, 783, 935, 1139
BssMI	GATC	6 cut(s)	377, 439, 685, 736, 787, 901
BssNI	GRCGYC	1 cut(s)	36
BssSI	CACGAG	1 cut(s)	689
BssT1I	CCWWGG	3 cut(s)	89, 676, 783
Bst2BI	CACGAG	1 cut(s)	689
Bst2UI	CCWGG	2 cut(s)	937, 1140
Bst4CI	ACNGT	4 cut(s)	265, 568, 710, 953
Bst6I	CTCTTC	2 cut(s)	205, 873
BstACI	GRCGYC	1 cut(s)	36
BstAPI	GCANNNNNTGC	1 cut(s)	837
BstBAI	YACGTR	2 cut(s)	466, 819
BstC8I	GCNNGC	4 cut(s)	67, 71, 516, 999
BstDEI	CTNAG	6 cut(s)	140, 233, 294, 329, 919, 1050
BstDSI	CCRYGG	2 cut(s)	264, 783
BstENI	CCTNNNNNAGG	1 cut(s)	74
BstF5I	GGATG	4 cut(s)	599, 865, 972, 1057
BstKTI	GATC	6 cut(s)	380, 442, 688, 739, 790, 904
BstMAI	GTCTC	2 cut(s)	686, 888
BstMBI	GATC	6 cut(s)	377, 439, 685, 736, 787, 901
BstMCI	CGRYCG	1 cut(s)	264
BstMWI	GCNNNNNNNGC	8 cut(s)	44, 122, 145, 372, 431, 641, 753, 837
BstNI	CCWGG	2 cut(s)	937, 1140
BstSCI	CCNGG	3 cut(s)	96, 935, 1138
BstSFI	CTRYAG	1 cut(s)	71
BstV1I	GCAGC	3 cut(s)	412, 547, 551
BstX2I	RGATCY	3 cut(s)	377, 439, 787
BstYI	RGATCY	3 cut(s)	377, 439, 787
BsuRI	GGCC	7 cut(s)	59, 69, 116, 782, 857, 1001, 1175
BtgI	CCRYGG	2 cut(s)	264, 783
BtsCI	GGATG	4 cut(s)	599, 865, 972, 1057
BtsI	GCAGTG	2 cut(s)	570, 637
BtsIMutI	CAGTG	4 cut(s)	230, 564, 570, 637
BveI	ACCTGC	1 cut(s)	904
Cac8I	GCNNGC	4 cut(s)	67, 71, 516, 999
Cfr13I	GGNCC	1 cut(s)	94
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	3 cut(s)	228, 742, 850
CviAII	CATG	6 cut(s)	511, 703, 770, 775, 784, 1069
CviQI	GTAC	3 cut(s)	228, 742, 850
DdeI	CTNAG	6 cut(s)	140, 233, 294, 329, 919, 1050
DpnI	GATC	6 cut(s)	379, 441, 687, 738, 789, 903
DpnII	GATC	6 cut(s)	377, 439, 685, 736, 787, 901
DriI	GACNNNNNGTC	1 cut(s)	914
EaeI	YGGCCR	2 cut(s)	114, 855
Eam1104I	CTCTTC	2 cut(s)	205, 873
Eam1105I	GACNNNNNGTC	1 cut(s)	914
EarI	CTCTTC	2 cut(s)	205, 873
Eco130I	CCWWGG	3 cut(s)	89, 676, 783
Eco147I	AGGCCT	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	296
Eco72I	CACGTG	2 cut(s)	466, 819
EcoNI	CCTNNNNNAGG	1 cut(s)	74
EcoO109I	RGGNCCY	1 cut(s)	94
EcoRII	CCWGG	2 cut(s)	935, 1138
EcoT14I	CCWWGG	3 cut(s)	89, 676, 783
ErhI	CCWWGG	3 cut(s)	89, 676, 783
FaeI	CATG	6 cut(s)	514, 706, 773, 778, 787, 1072
FaqI	GGGAC	2 cut(s)	107, 542
FatI	CATG	6 cut(s)	510, 702, 769, 774, 783, 1068
FauI	CCCGC	2 cut(s)	214, 1092
FauNDI	CATATG	1 cut(s)	253
FbaI	TGATCA	1 cut(s)	685
Fnu4HI	GCNGC	4 cut(s)	426, 537, 540, 561
FokI	GGATG	4 cut(s)	586, 852, 979, 1044
Fsp4HI	GCNGC	4 cut(s)	426, 537, 540, 561
FspBI	CTAG	3 cut(s)	1023, 1041, 1187
GluI	GCNGC	4 cut(s)	426, 537, 540, 561
GsuI	CTGGAG	2 cut(s)	414, 632
HaeIII	GGCC	7 cut(s)	59, 69, 116, 782, 857, 1001, 1175
HapII	CCGG	2 cut(s)	98, 437
HgaI	GACGC	1 cut(s)	44
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	6 cut(s)	514, 706, 773, 778, 787, 1072
HincII	GTYRAC	1 cut(s)	410
HindII	GTYRAC	1 cut(s)	410
HindIII	AAGCTT	2 cut(s)	146, 1148
HinfI	GANTC	1 cut(s)	881
HpaII	CCGG	2 cut(s)	98, 437
Hpy166II	GTNNAC	3 cut(s)	230, 410, 1183
Hpy188III	TCNNGA	2 cut(s)	689, 1010
Hpy8I	GTNNAC	3 cut(s)	230, 410, 1183
Hpy99I	CGWCG	1 cut(s)	912
HpyAV	CCTTC	9 cut(s)	49, 70, 274, 364, 388, 496, 772, 1012, 1116
HpyCH4III	ACNGT	4 cut(s)	265, 568, 710, 953
HpyCH4IV	ACGT	2 cut(s)	465, 818
HpyCH4V	TGCA	3 cut(s)	73, 405, 991
HpyF10VI	GCNNNNNNNGC	8 cut(s)	44, 122, 145, 372, 431, 641, 753, 837
HpyF3I	CTNAG	6 cut(s)	140, 233, 294, 329, 919, 1050
HpySE526I	ACGT	2 cut(s)	465, 818
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	6 cut(s)	514, 706, 773, 778, 787, 1072
KflI	GGGWCCC	1 cut(s)	94
Ksp22I	TGATCA	1 cut(s)	685
Kzo9I	GATC	6 cut(s)	377, 439, 685, 736, 787, 901
LguI	GCTCTTC	1 cut(s)	205
LmnI	GCTCC	4 cut(s)	136, 271, 433, 504
Lsp1109I	GCAGC	3 cut(s)	412, 547, 551
LweI	GCATC	1 cut(s)	485
MaeI	CTAG	3 cut(s)	1023, 1041, 1187
MaeII	ACGT	2 cut(s)	465, 818
MaeIII	GTNAC	3 cut(s)	568, 821, 984
MalI	GATC	6 cut(s)	379, 441, 687, 738, 789, 903
MbiI	CCGCTC	1 cut(s)	215
MboI	GATC	6 cut(s)	377, 439, 685, 736, 787, 901
MboII	GAAGA	4 cut(s)	64, 222, 289, 890
MflI	RGATCY	3 cut(s)	377, 439, 787
MlsI	TGGCCA	1 cut(s)	857
MluCI	AATT	2 cut(s)	861, 1028
MluNI	TGGCCA	1 cut(s)	857
MlyI	GAGTC	1 cut(s)	890
Mox20I	TGGCCA	1 cut(s)	857
MscI	TGGCCA	1 cut(s)	857
MseI	TTAA	3 cut(s)	107, 342, 594
MslI	CAYNNNNRTG	1 cut(s)	125
Msp20I	TGGCCA	1 cut(s)	857
MspA1I	CMGCKG	1 cut(s)	542
MspI	CCGG	2 cut(s)	98, 437
MspR9I	CCNGG	3 cut(s)	98, 937, 1140
MvaI	CCWGG	2 cut(s)	937, 1140
MwoI	GCNNNNNNNGC	8 cut(s)	44, 122, 145, 372, 431, 641, 753, 837
NciI	CCSGG	1 cut(s)	98
NcoI	CCATGG	1 cut(s)	783
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	6 cut(s)	377, 439, 685, 736, 787, 901
NlaIII	CATG	6 cut(s)	514, 706, 773, 778, 787, 1072
NlaIV	GGNNCC	5 cut(s)	95, 96, 249, 789, 1104
NmeAIII	GCCGAG	1 cut(s)	820
NmuCI	GTSAC	2 cut(s)	568, 821
PceI	AGGCCT	1 cut(s)	59
PciSI	GCTCTTC	1 cut(s)	205
PkrI	GCNGC	4 cut(s)	427, 538, 541, 562
PleI	GAGTC	1 cut(s)	889
PmaCI	CACGTG	2 cut(s)	466, 819
PmlI	CACGTG	2 cut(s)	466, 819
PpsI	GAGTC	1 cut(s)	889
Ppu21I	YACGTR	2 cut(s)	466, 819
PpuMI	RGGWCCY	1 cut(s)	94
Psp5II	RGGWCCY	1 cut(s)	94
Psp6I	CCWGG	2 cut(s)	935, 1138
PspCI	CACGTG	2 cut(s)	466, 819
PspGI	CCWGG	2 cut(s)	935, 1138
PspN4I	GGNNCC	5 cut(s)	95, 96, 249, 789, 1104
PspPI	GGNCC	1 cut(s)	94
PspPPI	RGGWCCY	1 cut(s)	94
PstI	CTGCAG	1 cut(s)	75
PsuI	RGATCY	3 cut(s)	377, 439, 787
PvuII	CAGCTG	1 cut(s)	542
RsaI	GTAC	3 cut(s)	229, 743, 851
RsaNI	GTAC	3 cut(s)	228, 742, 850
RseI	CAYNNNNRTG	1 cut(s)	125
SapI	GCTCTTC	1 cut(s)	205
SaqAI	TTAA	3 cut(s)	107, 342, 594
SatI	GCNGC	4 cut(s)	426, 537, 540, 561
Sau3AI	GATC	6 cut(s)	377, 439, 685, 736, 787, 901
Sau96I	GGNCC	1 cut(s)	94
ScaI	AGTACT	1 cut(s)	851
SchI	GAGTC	1 cut(s)	890
ScrFI	CCNGG	3 cut(s)	98, 937, 1140
SfaNI	GCATC	1 cut(s)	485
SfcI	CTRYAG	1 cut(s)	71
SinI	GGWCC	1 cut(s)	94
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	2 cut(s)	317, 385
SmoI	CTYRAG	2 cut(s)	317, 385
Sse9I	AATT	2 cut(s)	861, 1028
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	7 cut(s)	125, 189, 215, 221, 537, 745, 1099
SspI	AATATT	1 cut(s)	810
SspMI	CTAG	3 cut(s)	1023, 1041, 1187
StuI	AGGCCT	1 cut(s)	59
StyD4I	CCNGG	3 cut(s)	96, 935, 1138
StyI	CCWWGG	3 cut(s)	89, 676, 783
TaaI	ACNGT	4 cut(s)	265, 568, 710, 953
TaiI	ACGT	2 cut(s)	468, 821
TaqI	TCGA	1 cut(s)	1193
TasI	AATT	2 cut(s)	861, 1028
TatI	WGTACW	1 cut(s)	849
TauI	GCSGC	1 cut(s)	539
Tru1I	TTAA	3 cut(s)	107, 342, 594
Tru9I	TTAA	3 cut(s)	107, 342, 594
TscAI	CASTG	4 cut(s)	237, 571, 577, 637
TseFI	GTSAC	2 cut(s)	568, 821
TseI	GCWGC	3 cut(s)	425, 539, 560
Tsp45I	GTSAC	2 cut(s)	568, 821
TspDTI	ATGAA	4 cut(s)	65, 791, 854, 1046
TspRI	CASTG	4 cut(s)	237, 571, 577, 637
VpaK11BI	GGWCC	1 cut(s)	94
XagI	CCTNNNNNAGG	1 cut(s)	74
XspI	CTAG	3 cut(s)	1023, 1041, 1187
ZrmI	AGTACT	1 cut(s)	851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.