Rw5G041670

Plant protein of unknown function (DUF641)

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
73258524 .. 73260075
1552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G041670.1

Sequence Viewer

Length: 1212 bp
ATGGTCAAGCCGAGGACAAAAGGAGGAATGGCCTCCTCCGGCAGGAACAGAAGTTCCGGGGACCTTGCCTATTATCGCGGCACGAGAGACCAGGAAGCATACAAGACTCACGATGAAGATGAAGAAGAGAAGGAGGAGATGGGAATGCAGTTCGTAATTATGACAGAAGTGTTCAACGCCGTTTCAGCCATGACAATTGCATACGTGAGCCTACAAGAGGCCCACAACCCGTGGGACCCGGAGAAGCTGAGGGCGGCTGACGTGGCGGTGGTGGGGGAGCTGAGAAAGCTGGGAGACTTAAGAGAGAGGTACTTGAGGAGAAGATGTTACGGCGGAGGTAGTGGTGATATGCTGAGGGAGGCGGTGGTGCCGTACGAGGCGGCAATCGAGGAGCTGAAGAAAGAGGTGAAGAGTAGAGATATGGAGGTTGACAATCTGAAAGAGAAGCTCAAGAGCATTATTGGAGAGGCCAATAGCGGGAAGAAGAGCAGGAATTCTATGTCTAGGAGAAAGGTCCATTTTCTCCTCTCTCTCATGCGTGCGGCTCACTGGGATATCGCTGCGGTCGTTCGCTCCATTGAAGCCACTACTGCCACAGCTACGAGGATCAGCGCTTCCTCTGTAATCCAAACTCAACGTGCCAACGCCAAGTTCGCTCTTCAGTCCTACATTTTCCGAAAAGTCTTTCAAGGCTTCGACCACGAGAGCTTCTACATGGATAACGGCCTCTCCTCAGTTCTCAGCCCAGACCAGTATCGCCGGGACTGCTTCGCCGAATATTGTGACATCAAAAACATGGACTCCACAGAGCTTCTCAATATCCAGCCCTCGTGTAACTTTGGCAAGTTTTGCTCCAACAAGTACTTGGCTATTGTTCATCCCAAGATGGAGGAGTCATTCTTCGGAGACTTGGAGCAGAGACAACAAGTTGTAGAAGGCAGGATCCCTAGGAGTCAGTTTTACAGGCAGTTCTTGGAGTTGGCTAAGGCGATGTGGTTGCTTCACTTGCTGGCGTTCTCGCTTGACCCTGCACCAAGTCAGTTTGAGGCTAGCAGAGGATCTGATTTTCATCCAGACTACATGGACAGTGTTCTCAAGTCTCCAGGACAAGTTCCTTCGGCTCAAGTTGTTGGGTTTCCCTTAATTCCAGGGTTCAAGCTTGGCAATGGGTCCATTATTAAGGCCAGAGTTTACCTTGTATCCAAGAATTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

403

Amino Acids

45.6

Weight (kDa)

8.61

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF641 PF04859 52 - 161 2.5e-30 Plant protein of unknown function (DUF641)
GIL1_IRKI_C PF24994 348 - 398 1.3e-08 GIL1/IRKI C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 367
AccII CGCG 1 cut(s) 78
AciI CCGC 9 cut(s) 78, 254, 266, 333, 362, 380, 477, 542, 563
AclWI GGATC 4 cut(s) 614, 937, 950, 1066
AcsI RAATTY 1 cut(s) 493
AcuI CTGAAG 2 cut(s) 416, 644
AfaI GTAC 3 cut(s) 311, 374, 863
AfeI AGCGCT 1 cut(s) 613
AfiI CCNNNNNNNGG 3 cut(s) 42, 217, 477
AflII CTTAAG 1 cut(s) 298
AgsI TTSAA 4 cut(s) 175, 581, 689, 1156
AjiI CACGTC 1 cut(s) 262
AjnI CCWGG 3 cut(s) 90, 1102, 1147
AjuI GAANNNNNNNTTGG 2 cut(s) 635, 667
AloI GAACNNNNNNTCC 4 cut(s) 37, 38, 69, 70
AluBI AGCT 9 cut(s) 247, 280, 289, 394, 448, 599, 708, 811, 1159
AluI AGCT 9 cut(s) 247, 280, 289, 394, 448, 599, 708, 811, 1159
Alw26I GTCTC 5 cut(s) 81, 288, 900, 913, 1104
AlwI GGATC 4 cut(s) 614, 937, 950, 1066
Aor51HI AGCGCT 1 cut(s) 613
AoxI GGCC 5 cut(s) 30, 219, 468, 724, 1182
ApeKI GCWGC 1 cut(s) 560
ApoI RAATTY 1 cut(s) 493
AspA2I CCTAGG 1 cut(s) 947
AspLEI GCGC 1 cut(s) 614
AspS9I GGNCC 5 cut(s) 61, 220, 235, 514, 1170
AsuC2I CCSGG 3 cut(s) 58, 239, 761
AsuHPI GGTGA 2 cut(s) 356, 418
AsuNHI GCTAGC 1 cut(s) 1049
AvaII GGWCC 4 cut(s) 61, 235, 514, 1170
AvrII CCTAGG 1 cut(s) 947
BamHI GGATCC 1 cut(s) 942
BanI GGYRCC 1 cut(s) 367
BauI CACGAG 3 cut(s) 82, 701, 829
BbvCI CCTCAGC 2 cut(s) 248, 353
BbvI GCAGC 1 cut(s) 547
BccI CCATC 2 cut(s) 133, 880
BceAI ACGGC 4 cut(s) 164, 346, 355, 739
BcgI CGANNNNNNTGC 2 cut(s) 979, 1013
BciT130I CCWGG 3 cut(s) 92, 1104, 1149
BciVI GTATCC 1 cut(s) 1210
BcnI CCSGG 3 cut(s) 58, 239, 761
BcoDI GTCTC 5 cut(s) 81, 288, 900, 913, 1104
BfaI CTAG 3 cut(s) 504, 948, 1050
BfoI RGCGCY 1 cut(s) 615
BfrI CTTAAG 1 cut(s) 298
BfuI GTATCC 1 cut(s) 1210
BisI GCNGC 5 cut(s) 79, 255, 381, 543, 561
BlnI CCTAGG 1 cut(s) 947
BlsI GCNGC 5 cut(s) 80, 256, 382, 544, 562
BmcAI AGTACT 1 cut(s) 863
Bme1390I CCNGG 6 cut(s) 58, 92, 239, 761, 1104, 1149
Bme18I GGWCC 4 cut(s) 61, 235, 514, 1170
BmgBI CACGTC 1 cut(s) 262
BmgT120I GGNCC 5 cut(s) 61, 220, 235, 514, 1170
BmiI GGNNCC 6 cut(s) 62, 236, 237, 369, 944, 1171
BmrFI CCNGG 6 cut(s) 58, 92, 239, 761, 1104, 1149
BmrI ACTGGG 1 cut(s) 559
BmtI GCTAGC 1 cut(s) 1053
BmuI ACTGGG 1 cut(s) 559
BpmI CTGGAG 1 cut(s) 1086
Bpu10I CCTNAGC 3 cut(s) 248, 353, 984
BpuEI CTTGAG 4 cut(s) 334, 434, 1079, 1107
BpuMI CCSGG 3 cut(s) 58, 239, 761
BsaAI YACGTR 1 cut(s) 205
BsaBI GATNNNNATC 1 cut(s) 1068
BsaI GGTCTC 1 cut(s) 81
BsaJI CCNNGG 5 cut(s) 11, 57, 230, 947, 1148
BsaXI ACNNNNNCTCC 6 cut(s) 310, 340, 713, 743, 785, 815
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 217, 477
Bse1I ACTGG 2 cut(s) 554, 751
Bse3DI GCAATG 1 cut(s) 1171
Bse8I GATNNNNATC 1 cut(s) 1068
BseBI CCWGG 3 cut(s) 92, 1104, 1149
BseDI CCNNGG 5 cut(s) 11, 57, 230, 947, 1148
BseGI GGATG 2 cut(s) 877, 1069
BseJI GATNNNNATC 1 cut(s) 1068
BseLI CCNNNNNNNGG 3 cut(s) 42, 217, 477
BseMI GCAATG 1 cut(s) 1171
BseMII CTCAG 5 cut(s) 239, 272, 344, 747, 754
BseNI ACTGG 2 cut(s) 554, 751
BseRI GAGGAG 7 cut(s) 25, 149, 331, 404, 515, 721, 905
BseXI GCAGC 1 cut(s) 547
BseYI CCCAGC 1 cut(s) 289
BsgI GTGCAG 1 cut(s) 1014
Bsh1236I CGCG 1 cut(s) 78
Bsh1285I CGRYCG 1 cut(s) 567
BshFI GGCC 5 cut(s) 32, 221, 470, 726, 1184
BshNI GGYRCC 1 cut(s) 367
BsiEI CGRYCG 1 cut(s) 567
BsiSI CCGG 4 cut(s) 39, 57, 239, 760
BsiWI CGTACG 1 cut(s) 372
BslFI GGGAC 3 cut(s) 74, 248, 776
BslI CCNNNNNNNGG 3 cut(s) 42, 217, 477
BsmAI GTCTC 5 cut(s) 81, 288, 900, 913, 1104
BsmFI GGGAC 3 cut(s) 74, 248, 776
BsmI GAATGC 1 cut(s) 150
BsnI GGCC 5 cut(s) 32, 221, 470, 726, 1184
Bso31I GGTCTC 1 cut(s) 81
Bsp143I GATC 3 cut(s) 606, 942, 1058
BspACI CCGC 9 cut(s) 78, 254, 266, 333, 362, 380, 477, 542, 563
BspANI GGCC 5 cut(s) 32, 221, 470, 726, 1184
BspCNI CTCAG 5 cut(s) 240, 273, 345, 746, 753
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 6 cut(s) 62, 236, 237, 369, 944, 1171
BspOI GCTAGC 1 cut(s) 1053
BspPI GGATC 4 cut(s) 614, 937, 950, 1066
BspQI GCTCTTC 2 cut(s) 479, 663
BspT107I GGYRCC 1 cut(s) 367
BspTI CTTAAG 1 cut(s) 298
BspTNI GGTCTC 1 cut(s) 81
BsrDI GCAATG 1 cut(s) 1171
BsrI ACTGG 2 cut(s) 554, 751
BssECI CCNNGG 5 cut(s) 11, 57, 230, 947, 1148
BssMI GATC 3 cut(s) 606, 942, 1058
BssSI CACGAG 3 cut(s) 82, 701, 829
BssT1I CCWWGG 1 cut(s) 947
Bst2BI CACGAG 3 cut(s) 82, 701, 829
Bst2UI CCWGG 3 cut(s) 92, 1104, 1149
Bst4CI ACNGT 1 cut(s) 1088
Bst6I CTCTTC 4 cut(s) 120, 404, 479, 663
BstAFI CTTAAG 1 cut(s) 298
BstAPI GCANNNNNTGC 1 cut(s) 849
BstBAI YACGTR 1 cut(s) 205
BstC8I GCNNGC 3 cut(s) 540, 1011, 1051
BstDEI CTNAG 6 cut(s) 248, 281, 353, 733, 740, 984
BstDSI CCRYGG 1 cut(s) 230
BstENI CCTNNNNNAGG 2 cut(s) 40, 215
BstF5I GGATG 2 cut(s) 877, 1069
BstFNI CGCG 1 cut(s) 78
BstH2I RGCGCY 1 cut(s) 615
BstHHI GCGC 1 cut(s) 614
BstKTI GATC 3 cut(s) 609, 945, 1061
BstMAI GTCTC 5 cut(s) 81, 288, 900, 913, 1104
BstMBI GATC 3 cut(s) 606, 942, 1058
BstMCI CGRYCG 1 cut(s) 567
BstMWI GCNNNNNNNGC 8 cut(s) 185, 263, 286, 590, 653, 765, 849, 1006
BstNI CCWGG 3 cut(s) 92, 1104, 1149
BstSCI CCNGG 6 cut(s) 56, 90, 237, 759, 1102, 1147
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 547
BstX2I RGATCY 2 cut(s) 942, 1058
BstYI RGATCY 2 cut(s) 942, 1058
BsuI GTATCC 1 cut(s) 1210
BsuRI GGCC 5 cut(s) 32, 221, 470, 726, 1184
BtgI CCRYGG 1 cut(s) 230
BtgZI GCGATG 1 cut(s) 1004
BtrI CACGTC 1 cut(s) 262
BtsCI GGATG 2 cut(s) 877, 1069
BtsIMutI CAGTG 2 cut(s) 547, 1093
Cac8I GCNNGC 3 cut(s) 540, 1011, 1051
CfoI GCGC 1 cut(s) 614
Cfr13I GGNCC 5 cut(s) 61, 220, 235, 514, 1170
Csp6I GTAC 3 cut(s) 310, 373, 862
CviAII CATG 5 cut(s) 190, 535, 715, 796, 1081
CviQI GTAC 3 cut(s) 310, 373, 862
DdeI CTNAG 6 cut(s) 248, 281, 353, 733, 740, 984
DpnI GATC 3 cut(s) 608, 944, 1060
DpnII GATC 3 cut(s) 606, 942, 1058
Eam1104I CTCTTC 4 cut(s) 120, 404, 479, 663
EarI CTCTTC 4 cut(s) 120, 404, 479, 663
EciI GGCGGA 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 947
Eco31I GGTCTC 1 cut(s) 81
Eco32I GATATC 1 cut(s) 556
Eco47I GGWCC 4 cut(s) 61, 235, 514, 1170
Eco47III AGCGCT 1 cut(s) 613
Eco57I CTGAAG 2 cut(s) 416, 644
EcoNI CCTNNNNNAGG 2 cut(s) 40, 215
EcoO109I RGGNCCY 2 cut(s) 61, 235
EcoRI GAATTC 1 cut(s) 493
EcoRII CCWGG 3 cut(s) 90, 1102, 1147
EcoRV GATATC 1 cut(s) 556
EcoT14I CCWWGG 1 cut(s) 947
ErhI CCWWGG 1 cut(s) 947
FaeI CATG 5 cut(s) 193, 538, 718, 799, 1084
FaqI GGGAC 3 cut(s) 74, 248, 776
FatI CATG 5 cut(s) 189, 534, 714, 795, 1080
FauI CCCGC 1 cut(s) 470
Fnu4HI GCNGC 5 cut(s) 79, 255, 381, 543, 561
FokI GGATG 2 cut(s) 864, 1056
Fsp4HI GCNGC 5 cut(s) 79, 255, 381, 543, 561
FspBI CTAG 3 cut(s) 504, 948, 1050
GlaI GCGC 1 cut(s) 613
GluI GCNGC 5 cut(s) 79, 255, 381, 543, 561
GsaI CCCAGC 1 cut(s) 293
GsuI CTGGAG 1 cut(s) 1086
HaeII RGCGCY 1 cut(s) 615
HaeIII GGCC 5 cut(s) 32, 221, 470, 726, 1184
HapII CCGG 4 cut(s) 39, 57, 239, 760
HhaI GCGC 1 cut(s) 614
Hin1II CATG 5 cut(s) 193, 538, 718, 799, 1084
Hin6I GCGC 1 cut(s) 612
HinP1I GCGC 1 cut(s) 612
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HindIII AAGCTT 1 cut(s) 1157
HinfI GANTC 4 cut(s) 106, 800, 893, 952
HpaII CCGG 4 cut(s) 39, 57, 239, 760
HphI GGTGA 2 cut(s) 356, 418
Hpy166II GTNNAC 2 cut(s) 430, 1192
Hpy188I TCNGA 4 cut(s) 438, 677, 905, 1063
Hpy188III TCNNGA 3 cut(s) 110, 451, 1073
Hpy8I GTNNAC 2 cut(s) 430, 1192
HpyAV CCTTC 3 cut(s) 124, 929, 1125
HpyCH4III ACNGT 1 cut(s) 1088
HpyCH4IV ACGT 3 cut(s) 204, 261, 637
HpyCH4V TGCA 3 cut(s) 148, 200, 1031
HpyF10VI GCNNNNNNNGC 8 cut(s) 185, 263, 286, 590, 653, 765, 849, 1006
HpyF3I CTNAG 6 cut(s) 248, 281, 353, 733, 740, 984
HpySE526I ACGT 3 cut(s) 204, 261, 637
Hsp92II CATG 5 cut(s) 193, 538, 718, 799, 1084
HspAI GCGC 1 cut(s) 612
KflI GGGWCCC 1 cut(s) 235
Kzo9I GATC 3 cut(s) 606, 942, 1058
LguI GCTCTTC 2 cut(s) 479, 663
LmnI GCTCC 5 cut(s) 277, 391, 578, 857, 913
Lsp1109I GCAGC 1 cut(s) 547
MaeI CTAG 3 cut(s) 504, 948, 1050
MaeII ACGT 3 cut(s) 204, 261, 637
MaeIII GTNAC 3 cut(s) 326, 782, 833
MalI GATC 3 cut(s) 608, 944, 1060
MboI GATC 3 cut(s) 606, 942, 1058
MfeI CAATTG 1 cut(s) 195
MflI RGATCY 2 cut(s) 942, 1058
MluCI AATT 5 cut(s) 156, 195, 493, 1143, 1207
MlyI GAGTC 4 cut(s) 100, 794, 902, 961
MmeI TCCRAC 1 cut(s) 879
MseI TTAA 3 cut(s) 299, 1142, 1179
MspCI CTTAAG 1 cut(s) 298
MspI CCGG 4 cut(s) 39, 57, 239, 760
MspR9I CCNGG 6 cut(s) 58, 92, 239, 761, 1104, 1149
MunI CAATTG 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 150
MvaI CCWGG 3 cut(s) 92, 1104, 1149
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 8 cut(s) 185, 263, 286, 590, 653, 765, 849, 1006
NciI CCSGG 3 cut(s) 58, 239, 761
NdeII GATC 3 cut(s) 606, 942, 1058
NheI GCTAGC 1 cut(s) 1049
NlaIII CATG 5 cut(s) 193, 538, 718, 799, 1084
NlaIV GGNNCC 6 cut(s) 62, 236, 237, 369, 944, 1171
NmeAIII GCCGAG 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 782
PciSI GCTCTTC 2 cut(s) 479, 663
PcsI WCGNNNNNNNCGW 1 cut(s) 564
PctI GAATGC 1 cut(s) 150
Pfl23II CGTACG 1 cut(s) 372
PfoI TCCNGGA 1 cut(s) 1102
PkrI GCNGC 5 cut(s) 80, 256, 382, 544, 562
PleI GAGTC 4 cut(s) 100, 794, 901, 960
PpsI GAGTC 4 cut(s) 100, 794, 901, 960
Ppu21I YACGTR 1 cut(s) 205
PpuMI RGGWCCY 2 cut(s) 61, 235
Psp5II RGGWCCY 2 cut(s) 61, 235
Psp6I CCWGG 3 cut(s) 90, 1102, 1147
PspFI CCCAGC 1 cut(s) 289
PspGI CCWGG 3 cut(s) 90, 1102, 1147
PspLI CGTACG 1 cut(s) 372
PspN4I GGNNCC 6 cut(s) 62, 236, 237, 369, 944, 1171
PspPI GGNCC 5 cut(s) 61, 220, 235, 514, 1170
PspPPI RGGWCCY 2 cut(s) 61, 235
PsuI RGATCY 2 cut(s) 942, 1058
RsaI GTAC 3 cut(s) 311, 374, 863
RsaNI GTAC 3 cut(s) 310, 373, 862
SapI GCTCTTC 2 cut(s) 479, 663
SaqAI TTAA 3 cut(s) 299, 1142, 1179
SatI GCNGC 5 cut(s) 79, 255, 381, 543, 561
Sau3AI GATC 3 cut(s) 606, 942, 1058
Sau96I GGNCC 5 cut(s) 61, 220, 235, 514, 1170
ScaI AGTACT 1 cut(s) 863
SchI GAGTC 4 cut(s) 100, 794, 902, 961
ScrFI CCNGG 6 cut(s) 58, 92, 239, 761, 1104, 1149
SinI GGWCC 4 cut(s) 61, 235, 514, 1170
SmlI CTYRAG 5 cut(s) 298, 313, 449, 1094, 1122
SmoI CTYRAG 5 cut(s) 298, 313, 449, 1094, 1122
Sse9I AATT 5 cut(s) 156, 195, 493, 1143, 1207
SsiI CCGC 9 cut(s) 78, 254, 266, 333, 362, 380, 477, 542, 563
SspI AATATT 1 cut(s) 779
SspMI CTAG 3 cut(s) 504, 948, 1050
StyD4I CCNGG 6 cut(s) 56, 90, 237, 759, 1102, 1147
StyI CCWWGG 1 cut(s) 947
TaaI ACNGT 1 cut(s) 1088
TaiI ACGT 3 cut(s) 207, 264, 640
TaqI TCGA 2 cut(s) 387, 696
TasI AATT 5 cut(s) 156, 195, 493, 1143, 1207
TatI WGTACW 1 cut(s) 861
TauI GCSGC 4 cut(s) 81, 257, 383, 545
Tru1I TTAA 3 cut(s) 299, 1142, 1179
Tru9I TTAA 3 cut(s) 299, 1142, 1179
TscAI CASTG 2 cut(s) 554, 1093
TseFI GTSAC 1 cut(s) 782
TseI GCWGC 1 cut(s) 560
Tsp45I GTSAC 1 cut(s) 782
TspDTI ATGAA 4 cut(s) 129, 135, 866, 1058
TspRI CASTG 2 cut(s) 554, 1093
Vha464I CTTAAG 1 cut(s) 298
VpaK11BI GGWCC 4 cut(s) 61, 235, 514, 1170
XagI CCTNNNNNAGG 2 cut(s) 40, 215
XapI RAATTY 1 cut(s) 493
XcmI CCANNNNNNNNNTGG 1 cut(s) 862
XmaJI CCTAGG 1 cut(s) 947
XspI CTAG 3 cut(s) 504, 948, 1050
ZrmI AGTACT 1 cut(s) 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.