Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8216896.1

Orthogroup ID

OG0002215

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 713

Gene Structure 713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8216896.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

atgtggttgcttcacttgctggcgttctcgcttgaccctgcaccaagtcagtttgaggctggcagaggagctgattttcatccagactacatggagagtgttctcaagtctccaggacaagttccttcgggtcaagttgttgggtttcccttaattccagggttcaagcttggcaatgagtcgattattaaggccaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009959 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF641

Protein Analysis

66

Amino Acids

7.17

Weight (kDa)

6.0

Isoelectric Point (pI)

32.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58960 AT5G58960 AT5G58960
fragaria_vesca	FvH4_3g37820 FvH4_3g37850
malus_domestica	MD03G1078100.v1.1 MD11G1082800.v1.1
prunus_persica	Prupe.6G063100_v2.0.a1
pyrus_communis	pycom03g06240 pycom11g07090
rosa_chinensis	RchiOBHm_Chr5g0068001 RchiOBHm_Chr5g0068051 RchiOBHm_Chr5g0068071
rosa_laevigata	RLG00000035951 RLG00000035952
rosa_multiflora	Rmu_co8216896.1_g000001 Rmu_co8424771.1_g000001 Rmu_sc0000435.1_g000019 Rmu_sc0000435.1_g000025 Rmu_sc0000435.1_g000034
rosa_roxburghii	Rroxscaffold_1G00012550 Rroxscaffold_1G00012560 Rroxscaffold_1G00013280 Rroxscaffold_1G00013290
rosa_rugosa	Rorug05G0387200 Rorug05G0387600 Rorug05G0388100
rosa_samantha	Rh5AG446100 Rh5AG446300 Rh5AG446400 Rh5BG463600 Rh5BG464000 Rh5BG464300 Rh5CG485500 Rh5CG486000 Rh5CG486300 Rh5DG477600 Rh5DG478000 Rh5DG478300
rosa_wichuraiana	Rw5G041670 Rw5G041680 Rw5G041710 Rw5G041720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	166
AjnI	CCWGG	2 cut(s)	112, 157
AluBI	AGCT	2 cut(s)	71, 169
AluI	AGCT	2 cut(s)	71, 169
Alw26I	GTCTC	1 cut(s)	114
AoxI	GGCC	1 cut(s)	192
BciT130I	CCWGG	2 cut(s)	114, 159
BcoDI	GTCTC	1 cut(s)	114
Bme1390I	CCNGG	2 cut(s)	114, 159
BmrFI	CCNGG	2 cut(s)	114, 159
BpmI	CTGGAG	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	89
BsaBI	GATNNNNATC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	181
Bse8I	GATNNNNATC	1 cut(s)	78
BseBI	CCWGG	2 cut(s)	114, 159
BseDI	CCNNGG	1 cut(s)	158
BseGI	GGATG	1 cut(s)	79
BseJI	GATNNNNATC	1 cut(s)	78
BseMI	GCAATG	1 cut(s)	181
BseRI	GAGGAG	1 cut(s)	81
BsgI	GTGCAG	1 cut(s)	24
BshFI	GGCC	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	194
BspANI	GGCC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	158
Bst2UI	CCWGG	2 cut(s)	114, 159
BstC8I	GCNNGC	2 cut(s)	21, 61
BstF5I	GGATG	1 cut(s)	79
BstMAI	GTCTC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNI	CCWGG	2 cut(s)	114, 159
BstSCI	CCNGG	2 cut(s)	112, 157
BsuRI	GGCC	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	79
Cac8I	GCNNGC	2 cut(s)	21, 61
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	4 cut(s)	59, 71, 169, 194
CviKI_1	RGCY	4 cut(s)	59, 71, 169, 194
EcoRII	CCWGG	2 cut(s)	112, 157
FaeI	CATG	1 cut(s)	94
FaiI	YATR	1 cut(s)	92
FatI	CATG	1 cut(s)	90
FokI	GGATG	1 cut(s)	66
GsuI	CTGGAG	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	194
Hin1II	CATG	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	1 cut(s)	179
Hpy188III	TCNNGA	1 cut(s)	83
HpyAV	CCTTC	1 cut(s)	135
HpyCH4V	TGCA	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
Hsp92II	CATG	1 cut(s)	94
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	8 cut(s)	5, 45, 51, 96, 99, 126, 144, 171
MluCI	AATT	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	2 cut(s)	49, 59
MseI	TTAA	2 cut(s)	152, 189
MspR9I	CCNGG	2 cut(s)	114, 159
MvaI	CCWGG	2 cut(s)	114, 159
MwoI	GCNNNNNNNGC	1 cut(s)	16
NlaIII	CATG	1 cut(s)	94
PfoI	TCCNGGA	1 cut(s)	112
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
Psp6I	CCWGG	2 cut(s)	112, 157
PspGI	CCWGG	2 cut(s)	112, 157
SaqAI	TTAA	2 cut(s)	152, 189
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	2 cut(s)	114, 159
SetI	ASST	2 cut(s)	73, 171
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	1 cut(s)	153
StyD4I	CCNGG	2 cut(s)	112, 157
TaqI	TCGA	1 cut(s)	182
TasI	AATT	1 cut(s)	153
Tru1I	TTAA	2 cut(s)	152, 189
Tru9I	TTAA	2 cut(s)	152, 189
TspDTI	ATGAA	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.