Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002215

Physical Location & Seq

Genomic Coordinates Forward (+)

7031996 .. 7032517

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1082800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGAAGAGTCGTTGTTCGGGGACTTGGAGCAGAGACGACATGTCGTAGAAGGGGGACACCCGAGGAGCGACTTTTACGGGGAGTTTCTGGGGCTGGCGAAGGCGGTGTGGCTGCTGCACTTGCTGGCGTTTTCGCTTGATCCGCCGCCGAGCCAGTTCGAAGCGAGTCGAGGGGCGGAGTTTCATCCGGGTTATATGGAGAGTGTTGTGACGTTTGCGGGCGGGCGGGTTCCGGCGGGTCAGGTTGTCGGATTTCCGGTGTGTCCCGGGTTTAAGCTTGGGAATGGATCAGTTATTAAGGCTAGGGTTTATCTGGTAAATAGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009959 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF641

Protein Analysis

110

Amino Acids

11.92

Weight (kDa)

6.4

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GIL1_IRKI_C	PF24994	53 - 104	9.4e-12	GIL1/IRKI C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58960 AT5G58960 AT5G58960
fragaria_vesca	FvH4_3g37820 FvH4_3g37850
malus_domestica	MD03G1078100.v1.1 MD11G1082800.v1.1
prunus_persica	Prupe.6G063100_v2.0.a1
pyrus_communis	pycom03g06240 pycom11g07090
rosa_chinensis	RchiOBHm_Chr5g0068001 RchiOBHm_Chr5g0068051 RchiOBHm_Chr5g0068071
rosa_laevigata	RLG00000035951 RLG00000035952
rosa_multiflora	Rmu_co8216896.1_g000001 Rmu_co8424771.1_g000001 Rmu_sc0000435.1_g000019 Rmu_sc0000435.1_g000025 Rmu_sc0000435.1_g000034
rosa_roxburghii	Rroxscaffold_1G00012550 Rroxscaffold_1G00012560 Rroxscaffold_1G00013280 Rroxscaffold_1G00013290
rosa_rugosa	Rorug05G0387200 Rorug05G0387600 Rorug05G0388100
rosa_samantha	Rh5AG446100 Rh5AG446300 Rh5AG446400 Rh5BG463600 Rh5BG464000 Rh5BG464300 Rh5CG485500 Rh5CG486000 Rh5CG486300 Rh5DG477600 Rh5DG478000 Rh5DG478300
rosa_wichuraiana	Rw5G041670 Rw5G041680 Rw5G041710 Rw5G041720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	104, 143, 146, 176, 218, 222, 226, 236
AclWI	GGATC	2 cut(s)	134, 295
AflIII	ACRYGT	1 cut(s)	40
AhdI	GACNNNNNGTC	1 cut(s)	41
AluBI	AGCT	1 cut(s)	277
AluI	AGCT	1 cut(s)	277
Alw26I	GTCTC	1 cut(s)	28
AlwI	GGATC	2 cut(s)	134, 295
Ama87I	CYCGRG	2 cut(s)	61, 266
ApeKI	GCWGC	2 cut(s)	112, 115
AsuC2I	CCSGG	3 cut(s)	189, 267, 268
AsuII	TTCGAA	1 cut(s)	159
AvaI	CYCGRG	2 cut(s)	61, 266
BbvI	GCAGC	2 cut(s)	99, 102
BcnI	CCSGG	3 cut(s)	189, 267, 268
BcoDI	GTCTC	1 cut(s)	28
BfaI	CTAG	1 cut(s)	303
BisI	GCNGC	3 cut(s)	113, 116, 146
BlsI	GCNGC	3 cut(s)	114, 117, 147
Bme1390I	CCNGG	3 cut(s)	189, 267, 268
BmeRI	GACNNNNNGTC	1 cut(s)	41
BmeT110I	CYCGRG	2 cut(s)	61, 266
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	3 cut(s)	189, 267, 268
Bpu14I	TTCGAA	1 cut(s)	159
BpuMI	CCSGG	3 cut(s)	189, 267, 268
BsaJI	CCNNGG	2 cut(s)	62, 266
BsaWI	WCCGGW	1 cut(s)	256
Bse1I	ACTGG	1 cut(s)	154
BseDI	CCNNGG	2 cut(s)	62, 266
BseGI	GGATG	1 cut(s)	184
BseNI	ACTGG	1 cut(s)	154
BseRI	GAGGAG	1 cut(s)	79
BseXI	GCAGC	2 cut(s)	99, 102
BsgI	GTGCAG	1 cut(s)	101
BsiHKCI	CYCGRG	2 cut(s)	61, 266
BsiSI	CCGG	4 cut(s)	188, 233, 257, 267
BslFI	GGGAC	3 cut(s)	35, 69, 249
BsmAI	GTCTC	1 cut(s)	28
BsmBI	CGTCTC	1 cut(s)	28
BsmFI	GGGAC	3 cut(s)	35, 69, 249
BsoBI	CYCGRG	2 cut(s)	61, 266
Bsp119I	TTCGAA	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	139, 287
BspACI	CCGC	8 cut(s)	104, 143, 146, 176, 218, 222, 226, 236
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	2 cut(s)	134, 295
BspT104I	TTCGAA	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	154
BssECI	CCNNGG	2 cut(s)	62, 266
BssMI	GATC	2 cut(s)	139, 287
BstBI	TTCGAA	1 cut(s)	159
BstC8I	GCNNGC	4 cut(s)	96, 126, 220, 224
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	2 cut(s)	142, 290
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	2 cut(s)	139, 287
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 142
BstNSI	RCATGY	1 cut(s)	44
BstSCI	CCNGG	3 cut(s)	187, 265, 266
BstV1I	GCAGC	2 cut(s)	99, 102
BtsCI	GGATG	1 cut(s)	184
Cac8I	GCNNGC	4 cut(s)	96, 126, 220, 224
Cfr9I	CCCGGG	1 cut(s)	266
CviAII	CATG	1 cut(s)	41
CviJI	RGCY	5 cut(s)	94, 112, 153, 277, 302
CviKI_1	RGCY	5 cut(s)	94, 112, 153, 277, 302
DpnI	GATC	2 cut(s)	141, 289
DpnII	GATC	2 cut(s)	139, 287
DriI	GACNNNNNGTC	1 cut(s)	41
Eam1105I	GACNNNNNGTC	1 cut(s)	41
EciI	GGCGGA	2 cut(s)	132, 191
Eco88I	CYCGRG	2 cut(s)	61, 266
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	1 cut(s)	44
FaiI	YATR	3 cut(s)	42, 195, 197
FaqI	GGGAC	3 cut(s)	35, 69, 249
FatI	CATG	1 cut(s)	40
FauI	CCCGC	4 cut(s)	211, 215, 219, 229
Fnu4HI	GCNGC	3 cut(s)	113, 116, 146
FokI	GGATG	1 cut(s)	171
Fsp4HI	GCNGC	3 cut(s)	113, 116, 146
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	3 cut(s)	113, 116, 146
HapII	CCGG	4 cut(s)	188, 233, 257, 267
Hin1II	CATG	1 cut(s)	44
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	2 cut(s)	8, 166
HpaII	CCGG	4 cut(s)	188, 233, 257, 267
Hpy188I	TCNGA	1 cut(s)	251
HpyAV	CCTTC	2 cut(s)	44, 94
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	1 cut(s)	118
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 142
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	1 cut(s)	44
Kzo9I	GATC	2 cut(s)	139, 287
LmnI	GCTCC	2 cut(s)	28, 66
Lsp1109I	GCAGC	2 cut(s)	99, 102
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	2 cut(s)	141, 289
MboI	GATC	2 cut(s)	139, 287
MboII	GAAGA	1 cut(s)	17
MluCI	AATT	1 cut(s)	325
MlyI	GAGTC	2 cut(s)	17, 175
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	2 cut(s)	57, 164
MseI	TTAA	2 cut(s)	273, 297
MspI	CCGG	4 cut(s)	188, 233, 257, 267
MspR9I	CCNGG	3 cut(s)	189, 267, 268
MwoI	GCNNNNNNNGC	2 cut(s)	121, 142
NciI	CCSGG	3 cut(s)	189, 267, 268
NdeII	GATC	2 cut(s)	139, 287
NlaIII	CATG	1 cut(s)	44
NlaIV	GGNNCC	1 cut(s)	231
NmeAIII	GCCGAG	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	208
NspI	RCATGY	1 cut(s)	44
NspV	TTCGAA	1 cut(s)	159
PciI	ACATGT	1 cut(s)	40
PkrI	GCNGC	3 cut(s)	114, 117, 147
PleI	GAGTC	2 cut(s)	16, 174
PpsI	GAGTC	2 cut(s)	16, 174
PscI	ACATGT	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	231
SaqAI	TTAA	2 cut(s)	273, 297
SatI	GCNGC	3 cut(s)	113, 116, 146
Sau3AI	GATC	2 cut(s)	139, 287
SchI	GAGTC	2 cut(s)	17, 175
ScrFI	CCNGG	3 cut(s)	189, 267, 268
SetI	ASST	3 cut(s)	215, 246, 279
SfuI	TTCGAA	1 cut(s)	159
SmaI	CCCGGG	1 cut(s)	268
Sse9I	AATT	1 cut(s)	325
SsiI	CCGC	8 cut(s)	104, 143, 146, 176, 218, 222, 226, 236
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	3 cut(s)	187, 265, 266
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	2 cut(s)	159, 169
TasI	AATT	1 cut(s)	325
TauI	GCSGC	1 cut(s)	148
Tru1I	TTAA	2 cut(s)	273, 297
Tru9I	TTAA	2 cut(s)	273, 297
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	2 cut(s)	112, 115
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	1 cut(s)	173
TspMI	CCCGGG	1 cut(s)	266
XceI	RCATGY	1 cut(s)	44
XmaI	CCCGGG	1 cut(s)	266
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.