Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8424771.1

Orthogroup ID

OG0002215

Physical Location & Seq

Genomic Coordinates Forward (+)

117 .. 1442

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8424771.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1058 bp

atggtgatcacccaccgggatcagaacctggaaaaagtgaaattagaagttgacccacagttgctctacttccatgtaaaaccaataggctccgggaagcaaacagaattgtctctgcgatcagaaatggtcaagccgaggacaaaaggcggaatggcgggaaggttttggaatttctccgatctaattcagcaagtgtcagctgcttgcaacctccgcccaccagcctcctccggcaggaacagaagttccggtgacctagctgattattgcggcacgagagaccaggaagcatacaagactcatgaagatgaagaagaggaggaggtgatgggaatggagttcgtagttatgacagaattagtattcaacgccgtttcagccatgacaattgcatacgtgagcctacaagaagcccacaacccatgggacccggagaagctgagggcggctgacgtggcggtggtgggggagctgagaaggctgggagagttaagagagaggtacttgaggagaagatgttacggcggaggtagtggtgatatgctgagggaggcggtagtgccgtacgaggcggcaatcgaggagctgaagagagaggtgaaggctagagacatggaggttgacaatctcaaagagaagctcaagagcattattggagagaccactagcgggaagaagagctggacgtctctgtctaggagaaaggtcaattgcattactcaagttccagcagctcctgcaccagaattgttcgagggggcaatgagcggagttagagaggcattagacaccttcactatagttctcctctctctcatgcgtgcggctcactgggatatcgctgcggccgtacgctccattgaagccgccactgccacagctacgaggatcagcgcttcctctgtaatccaaactcaacgtgccaacgccaagttcgctcttcagtcctacatttcccgtaaagtctttcaagggttcgaccacgagagcttctacatggataacggcctctcctcagttctcagcccagaccagtatcaccgggactgcttcgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009959 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF641

Protein Analysis

353

Amino Acids

39.48

Weight (kDa)

6.23

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58960 AT5G58960 AT5G58960
fragaria_vesca	FvH4_3g37820 FvH4_3g37850
malus_domestica	MD03G1078100.v1.1 MD11G1082800.v1.1
prunus_persica	Prupe.6G063100_v2.0.a1
pyrus_communis	pycom03g06240 pycom11g07090
rosa_chinensis	RchiOBHm_Chr5g0068001 RchiOBHm_Chr5g0068051 RchiOBHm_Chr5g0068071
rosa_laevigata	RLG00000035951 RLG00000035952
rosa_multiflora	Rmu_co8216896.1_g000001 Rmu_co8424771.1_g000001 Rmu_sc0000435.1_g000019 Rmu_sc0000435.1_g000025 Rmu_sc0000435.1_g000034
rosa_roxburghii	Rroxscaffold_1G00012550 Rroxscaffold_1G00012560 Rroxscaffold_1G00013280 Rroxscaffold_1G00013290
rosa_rugosa	Rorug05G0387200 Rorug05G0387600 Rorug05G0388100
rosa_samantha	Rh5AG446100 Rh5AG446300 Rh5AG446400 Rh5BG463600 Rh5BG464000 Rh5BG464300 Rh5CG485500 Rh5CG486000 Rh5CG486300 Rh5DG477600 Rh5DG478000 Rh5DG478300
rosa_wichuraiana	Rw5G041670 Rw5G041680 Rw5G041710 Rw5G041720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	694
AatII	GACGTC	1 cut(s)	692
AccBSI	CCGCTC	1 cut(s)	771
AclWI	GGATC	2 cut(s)	27, 899
AcoI	YGGCCR	1 cut(s)	849
AcsI	RAATTY	1 cut(s)	172
AcuI	CTGAAG	2 cut(s)	611, 929
AcyI	GRCGYC	1 cut(s)	689
AfaI	GTAC	3 cut(s)	506, 569, 855
AfeI	AGCGCT	1 cut(s)	898
AfiI	CCNNNNNNNGG	2 cut(s)	237, 672
AgsI	TTSAA	3 cut(s)	370, 866, 974
AjiI	CACGTC	1 cut(s)	457
AjnI	CCWGG	2 cut(s)	27, 285
AjuI	GAANNNNNNNTTGG	2 cut(s)	920, 952
AloI	GAACNNNNNNTCC	4 cut(s)	232, 233, 264, 265
Alw26I	GTCTC	5 cut(s)	117, 276, 606, 656, 696
AlwI	GGATC	2 cut(s)	27, 899
AlwNI	CAGNNNCTG	2 cut(s)	28, 740
Aor51HI	AGCGCT	1 cut(s)	898
AoxI	GGCC	2 cut(s)	849, 1009
ApeKI	GCWGC	3 cut(s)	203, 734, 845
ApoI	RAATTY	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	899
AspS9I	GGNCC	1 cut(s)	430
AsuC2I	CCSGG	4 cut(s)	17, 94, 434, 1046
AsuHPI	GGTGA	6 cut(s)	16, 266, 340, 551, 613, 1034
AvaII	GGWCC	1 cut(s)	430
BauI	CACGAG	2 cut(s)	277, 986
BbvCI	CCTCAGC	2 cut(s)	443, 548
BbvI	GCAGC	3 cut(s)	190, 746, 832
BccI	CCATC	1 cut(s)	325
BceAI	ACGGC	5 cut(s)	359, 541, 550, 836, 1024
BciT130I	CCWGG	2 cut(s)	29, 287
BclI	TGATCA	1 cut(s)	6
BcnI	CCSGG	4 cut(s)	17, 94, 434, 1046
BcoDI	GTCTC	5 cut(s)	117, 276, 606, 656, 696
BfaI	CTAG	4 cut(s)	260, 609, 669, 699
BfmI	CTRYAG	1 cut(s)	801
BfoI	RGCGCY	1 cut(s)	900
BisI	GCNGC	9 cut(s)	204, 274, 450, 576, 735, 828, 846, 849, 870
BlsI	GCNGC	9 cut(s)	205, 275, 451, 577, 736, 829, 847, 850, 871
Bme1390I	CCNGG	6 cut(s)	17, 29, 94, 287, 434, 1046
Bme18I	GGWCC	1 cut(s)	430
BmgBI	CACGTC	1 cut(s)	457
BmgT120I	GGNCC	1 cut(s)	430
BmiI	GGNNCC	3 cut(s)	91, 431, 432
BmrFI	CCNGG	6 cut(s)	17, 29, 94, 287, 434, 1046
BmrI	ACTGGG	1 cut(s)	844
BmuI	ACTGGG	1 cut(s)	844
Bpu10I	CCTNAGC	2 cut(s)	443, 548
BpuEI	CTTGAG	3 cut(s)	529, 629, 708
BpuMI	CCSGG	4 cut(s)	17, 94, 434, 1046
BsaAI	YACGTR	1 cut(s)	400
BsaHI	GRCGYC	1 cut(s)	689
BsaI	GGTCTC	2 cut(s)	276, 656
BsaJI	CCNNGG	2 cut(s)	137, 425
BsaWI	WCCGGW	1 cut(s)	251
BsaXI	ACNNNNNCTCC	4 cut(s)	505, 535, 998, 1028
Bsc4I	CCNNNNNNNGG	2 cut(s)	237, 672
Bse1I	ACTGG	2 cut(s)	839, 1036
Bse3DI	GCAATG	1 cut(s)	771
BseBI	CCWGG	2 cut(s)	29, 287
BseDI	CCNNGG	2 cut(s)	137, 425
BseLI	CCNNNNNNNGG	2 cut(s)	237, 672
BseMI	GCAATG	1 cut(s)	771
BseMII	CTCAG	5 cut(s)	434, 467, 539, 1032, 1039
BseNI	ACTGG	2 cut(s)	839, 1036
BseRI	GAGGAG	7 cut(s)	220, 335, 338, 526, 599, 800, 1006
BseX3I	CGGCCG	1 cut(s)	849
BseXI	GCAGC	3 cut(s)	190, 746, 832
BseYI	CCCAGC	1 cut(s)	484
BsgI	GTGCAG	1 cut(s)	726
Bsh1285I	CGRYCG	1 cut(s)	852
BshFI	GGCC	2 cut(s)	851, 1011
BsiEI	CGRYCG	1 cut(s)	852
BsiSI	CCGG	6 cut(s)	16, 93, 234, 252, 434, 1045
BsiWI	CGTACG	2 cut(s)	567, 853
BslFI	GGGAC	1 cut(s)	443
BslI	CCNNNNNNNGG	2 cut(s)	237, 672
BsmAI	GTCTC	5 cut(s)	117, 276, 606, 656, 696
BsmBI	CGTCTC	1 cut(s)	696
BsmFI	GGGAC	1 cut(s)	443
BsnI	GGCC	2 cut(s)	851, 1011
Bso31I	GGTCTC	2 cut(s)	276, 656
Bsp143I	GATC	5 cut(s)	6, 19, 119, 181, 891
Bsp19I	CCATGG	1 cut(s)	425
BspANI	GGCC	2 cut(s)	851, 1011
BspCNI	CTCAG	5 cut(s)	435, 468, 540, 1031, 1038
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	3 cut(s)	91, 431, 432
BspPI	GGATC	2 cut(s)	27, 899
BspQI	GCTCTTC	2 cut(s)	674, 948
BspTNI	GGTCTC	2 cut(s)	276, 656
BsrBI	CCGCTC	1 cut(s)	771
BsrDI	GCAATG	1 cut(s)	771
BsrI	ACTGG	2 cut(s)	839, 1036
BssECI	CCNNGG	2 cut(s)	137, 425
BssMI	GATC	5 cut(s)	6, 19, 119, 181, 891
BssNI	GRCGYC	1 cut(s)	689
BssSI	CACGAG	2 cut(s)	277, 986
BssT1I	CCWWGG	1 cut(s)	425
Bst2BI	CACGAG	2 cut(s)	277, 986
Bst2UI	CCWGG	2 cut(s)	29, 287
Bst4CI	ACNGT	1 cut(s)	60
Bst6I	CTCTTC	4 cut(s)	312, 587, 674, 948
BstACI	GRCGYC	1 cut(s)	689
BstAPI	GCANNNNNTGC	1 cut(s)	740
BstBAI	YACGTR	1 cut(s)	400
BstC8I	GCNNGC	2 cut(s)	208, 825
BstDEI	CTNAG	5 cut(s)	443, 476, 548, 1018, 1025
BstDSI	CCRYGG	1 cut(s)	425
BstEII	GGTNACC	1 cut(s)	254
BstENI	CCTNNNNNAGG	1 cut(s)	235
BstH2I	RGCGCY	1 cut(s)	900
BstHHI	GCGC	1 cut(s)	899
BstKTI	GATC	5 cut(s)	9, 22, 122, 184, 894
BstMAI	GTCTC	5 cut(s)	117, 276, 606, 656, 696
BstMBI	GATC	5 cut(s)	6, 19, 119, 181, 891
BstMCI	CGRYCG	1 cut(s)	852
BstMWI	GCNNNNNNNGC	7 cut(s)	216, 380, 458, 481, 740, 875, 938
BstNI	CCWGG	2 cut(s)	29, 287
BstPI	GGTNACC	1 cut(s)	254
BstSCI	CCNGG	6 cut(s)	15, 27, 92, 285, 432, 1044
BstSFI	CTRYAG	1 cut(s)	801
BstV1I	GCAGC	3 cut(s)	190, 746, 832
BstZI	CGGCCG	1 cut(s)	849
BsuRI	GGCC	2 cut(s)	851, 1011
BtgI	CCRYGG	1 cut(s)	425
BtrI	CACGTC	1 cut(s)	457
BtsI	GCAGTG	1 cut(s)	873
BtsIMutI	CAGTG	2 cut(s)	832, 873
Cac8I	GCNNGC	2 cut(s)	208, 825
CaiI	CAGNNNCTG	2 cut(s)	28, 740
CciI	TCATGA	1 cut(s)	304
CfoI	GCGC	1 cut(s)	899
Cfr13I	GGNCC	1 cut(s)	430
Csp6I	GTAC	3 cut(s)	505, 568, 854
CviAII	CATG	7 cut(s)	74, 305, 385, 426, 616, 820, 1000
CviQI	GTAC	3 cut(s)	505, 568, 854
DdeI	CTNAG	5 cut(s)	443, 476, 548, 1018, 1025
DpnI	GATC	5 cut(s)	8, 21, 121, 183, 893
DpnII	GATC	5 cut(s)	6, 19, 119, 181, 891
DrdI	GACNNNNNNGTC	1 cut(s)	694
DseDI	GACNNNNNNGTC	1 cut(s)	694
EaeI	YGGCCR	1 cut(s)	849
EagI	CGGCCG	1 cut(s)	849
Eam1104I	CTCTTC	4 cut(s)	312, 587, 674, 948
EarI	CTCTTC	4 cut(s)	312, 587, 674, 948
EciI	GGCGGA	3 cut(s)	165, 206, 543
EclXI	CGGCCG	1 cut(s)	849
Eco130I	CCWWGG	1 cut(s)	425
Eco31I	GGTCTC	2 cut(s)	276, 656
Eco32I	GATATC	1 cut(s)	841
Eco47I	GGWCC	1 cut(s)	430
Eco47III	AGCGCT	1 cut(s)	898
Eco52I	CGGCCG	1 cut(s)	849
Eco57I	CTGAAG	2 cut(s)	611, 929
Eco91I	GGTNACC	1 cut(s)	254
EcoNI	CCTNNNNNAGG	1 cut(s)	235
EcoO109I	RGGNCCY	1 cut(s)	430
EcoO65I	GGTNACC	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	27, 285
EcoRV	GATATC	1 cut(s)	841
EcoT14I	CCWWGG	1 cut(s)	425
ErhI	CCWWGG	1 cut(s)	425
Esp3I	CGTCTC	1 cut(s)	696
FaeI	CATG	7 cut(s)	77, 308, 388, 429, 619, 823, 1003
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	7 cut(s)	73, 304, 384, 425, 615, 819, 999
FauI	CCCGC	2 cut(s)	151, 665
FbaI	TGATCA	1 cut(s)	6
Fnu4HI	GCNGC	9 cut(s)	204, 274, 450, 576, 735, 828, 846, 849, 870
Fsp4HI	GCNGC	9 cut(s)	204, 274, 450, 576, 735, 828, 846, 849, 870
FspBI	CTAG	4 cut(s)	260, 609, 669, 699
GlaI	GCGC	1 cut(s)	898
GluI	GCNGC	9 cut(s)	204, 274, 450, 576, 735, 828, 846, 849, 870
GsaI	CCCAGC	1 cut(s)	488
HaeII	RGCGCY	1 cut(s)	900
HaeIII	GGCC	2 cut(s)	851, 1011
HapII	CCGG	6 cut(s)	16, 93, 234, 252, 434, 1045
HhaI	GCGC	1 cut(s)	899
Hin1I	GRCGYC	1 cut(s)	689
Hin1II	CATG	7 cut(s)	77, 308, 388, 429, 619, 823, 1003
Hin6I	GCGC	1 cut(s)	897
HinP1I	GCGC	1 cut(s)	897
HincII	GTYRAC	2 cut(s)	52, 625
HindII	GTYRAC	2 cut(s)	52, 625
HinfI	GANTC	1 cut(s)	301
HpaII	CCGG	6 cut(s)	16, 93, 234, 252, 434, 1045
HphI	GGTGA	6 cut(s)	16, 266, 340, 551, 613, 1034
Hpy166II	GTNNAC	2 cut(s)	52, 625
Hpy188I	TCNGA	3 cut(s)	24, 124, 181
Hpy188III	TCNNGA	2 cut(s)	305, 646
Hpy8I	GTNNAC	2 cut(s)	52, 625
HpyAV	CCTTC	4 cut(s)	156, 474, 598, 805
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4IV	ACGT	4 cut(s)	399, 456, 689, 922
HpyCH4V	TGCA	4 cut(s)	210, 395, 717, 743
HpyF10VI	GCNNNNNNNGC	7 cut(s)	216, 380, 458, 481, 740, 875, 938
HpyF3I	CTNAG	5 cut(s)	443, 476, 548, 1018, 1025
HpySE526I	ACGT	4 cut(s)	399, 456, 689, 922
Hsp92I	GRCGYC	1 cut(s)	689
Hsp92II	CATG	7 cut(s)	77, 308, 388, 429, 619, 823, 1003
HspAI	GCGC	1 cut(s)	897
KflI	GGGWCCC	1 cut(s)	430
Ksp22I	TGATCA	1 cut(s)	6
Kzo9I	GATC	5 cut(s)	6, 19, 119, 181, 891
LguI	GCTCTTC	2 cut(s)	674, 948
LmnI	GCTCC	5 cut(s)	95, 472, 586, 742, 863
Lsp1109I	GCAGC	3 cut(s)	190, 746, 832
MaeI	CTAG	4 cut(s)	260, 609, 669, 699
MaeII	ACGT	4 cut(s)	399, 456, 689, 922
MaeIII	GTNAC	2 cut(s)	254, 521
MalI	GATC	5 cut(s)	8, 21, 121, 183, 893
MbiI	CCGCTC	1 cut(s)	771
MboI	GATC	5 cut(s)	6, 19, 119, 181, 891
MboII	GAAGA	8 cut(s)	320, 326, 329, 528, 604, 688, 691, 935
MfeI	CAATTG	2 cut(s)	390, 712
MluCI	AATT	8 cut(s)	41, 107, 172, 186, 359, 390, 712, 749
MlyI	GAGTC	1 cut(s)	295
MseI	TTAA	1 cut(s)	494
MslI	CAYNNNNRTG	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	6 cut(s)	16, 93, 234, 252, 434, 1045
MspR9I	CCNGG	6 cut(s)	17, 29, 94, 287, 434, 1046
MunI	CAATTG	2 cut(s)	390, 712
MvaI	CCWGG	2 cut(s)	29, 287
MwoI	GCNNNNNNNGC	7 cut(s)	216, 380, 458, 481, 740, 875, 938
NciI	CCSGG	4 cut(s)	17, 94, 434, 1046
NcoI	CCATGG	1 cut(s)	425
NdeII	GATC	5 cut(s)	6, 19, 119, 181, 891
NlaIII	CATG	7 cut(s)	77, 308, 388, 429, 619, 823, 1003
NlaIV	GGNNCC	3 cut(s)	91, 431, 432
NmeAIII	GCCGAG	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	254
PagI	TCATGA	1 cut(s)	304
PciSI	GCTCTTC	2 cut(s)	674, 948
PcsI	WCGNNNNNNNCGW	1 cut(s)	849
Pfl23II	CGTACG	2 cut(s)	567, 853
PfoI	TCCNGGA	1 cut(s)	92
PkrI	GCNGC	9 cut(s)	205, 275, 451, 577, 736, 829, 847, 850, 871
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
Ppu21I	YACGTR	1 cut(s)	400
PpuMI	RGGWCCY	1 cut(s)	430
Psp5II	RGGWCCY	1 cut(s)	430
Psp6I	CCWGG	2 cut(s)	27, 285
PspEI	GGTNACC	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	484
PspGI	CCWGG	2 cut(s)	27, 285
PspLI	CGTACG	2 cut(s)	567, 853
PspN4I	GGNNCC	3 cut(s)	91, 431, 432
PspPI	GGNCC	1 cut(s)	430
PspPPI	RGGWCCY	1 cut(s)	430
PstNI	CAGNNNCTG	2 cut(s)	28, 740
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	3 cut(s)	506, 569, 855
RsaNI	GTAC	3 cut(s)	505, 568, 854
RseI	CAYNNNNRTG	1 cut(s)	309
SapI	GCTCTTC	2 cut(s)	674, 948
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	9 cut(s)	204, 274, 450, 576, 735, 828, 846, 849, 870
Sau3AI	GATC	5 cut(s)	6, 19, 119, 181, 891
Sau96I	GGNCC	1 cut(s)	430
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	6 cut(s)	17, 29, 94, 287, 434, 1046
SfcI	CTRYAG	1 cut(s)	801
SinI	GGWCC	1 cut(s)	430
SmiMI	CAYNNNNRTG	1 cut(s)	309
SmlI	CTYRAG	3 cut(s)	508, 644, 723
SmoI	CTYRAG	3 cut(s)	508, 644, 723
Sse9I	AATT	8 cut(s)	41, 107, 172, 186, 359, 390, 712, 749
SspMI	CTAG	4 cut(s)	260, 609, 669, 699
StyD4I	CCNGG	6 cut(s)	15, 27, 92, 285, 432, 1044
StyI	CCWWGG	1 cut(s)	425
TaaI	ACNGT	1 cut(s)	60
TaiI	ACGT	4 cut(s)	402, 459, 692, 925
TaqI	TCGA	3 cut(s)	582, 756, 981
TasI	AATT	8 cut(s)	41, 107, 172, 186, 359, 390, 712, 749
TauI	GCSGC	6 cut(s)	276, 452, 578, 830, 851, 872
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TscAI	CASTG	2 cut(s)	839, 880
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	3 cut(s)	203, 734, 845
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	2 cut(s)	321, 327
TspRI	CASTG	2 cut(s)	839, 880
VpaK11BI	GGWCC	1 cut(s)	430
XagI	CCTNNNNNAGG	1 cut(s)	235
XapI	RAATTY	1 cut(s)	172
XspI	CTAG	4 cut(s)	260, 609, 669, 699
ZraI	GACGTC	1 cut(s)	690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.