Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002215

Physical Location & Seq

Genomic Coordinates Reverse (-)

52572475 .. 52573080

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0387200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGACGCTCTCTCTTTCTCTCTCAAGAGTAACCCTAAGGCCGTCATCGATCTTGCTTGATGGCGGTGCTGCAAACTTTCTGACTCTCAACAGAGAGGTTTCCCGGCCACGTAGTGACTCGGGCTCTTGGAATTGGAAGGGGGGCAGCGCTTCTCTTTCTACTTCCCTCCTCGGCGGCGACGGCGATTGGTTTCGCCTGTGCTCCTTGAATTCATGTGTGGATCGGCTTCGTCTTCTTGGCAGACCGAAGCCTCAGATGGTGGCCATCTTGGCCGCGTTGCAGCAAGTCTCCTCACCTCCATGGTCCGGCGGAGTAGGGACTTTCGGTGCCGGATCTGTCTTGCCGTGGGTGACAAAGAATTGGAAGCTATTTAGCGCAAGGCTGGCTTCAATACCGAGCTTGGTTTTTGCCGGCAGTGGCGGAGACGGATTAGTGCAAGCAGCTAACTATGGTGGTGCTGGTGCCGGAATGCACACAGGTTGCCCAACACTGATGGCAACACTGAGGAGGGAGTGGATGGCACACAGGTTTTCTATTTGGGAAGTTTTGATGAATGAAGAGGGAGTGGATGGCGACACGTCATCCTCTACTCCACATGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009639 GO:0009959 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF641

Protein Analysis

201

Amino Acids

21.23

Weight (kDa)

9.35

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58960 AT5G58960 AT5G58960
fragaria_vesca	FvH4_3g37820 FvH4_3g37850
malus_domestica	MD03G1078100.v1.1 MD11G1082800.v1.1
prunus_persica	Prupe.6G063100_v2.0.a1
pyrus_communis	pycom03g06240 pycom11g07090
rosa_chinensis	RchiOBHm_Chr5g0068001 RchiOBHm_Chr5g0068051 RchiOBHm_Chr5g0068071
rosa_laevigata	RLG00000035951 RLG00000035952
rosa_multiflora	Rmu_co8216896.1_g000001 Rmu_co8424771.1_g000001 Rmu_sc0000435.1_g000019 Rmu_sc0000435.1_g000025 Rmu_sc0000435.1_g000034
rosa_roxburghii	Rroxscaffold_1G00012550 Rroxscaffold_1G00012560 Rroxscaffold_1G00013280 Rroxscaffold_1G00013290
rosa_rugosa	Rorug05G0387200 Rorug05G0387600 Rorug05G0388100
rosa_samantha	Rh5AG446100 Rh5AG446300 Rh5AG446400 Rh5BG463600 Rh5BG464000 Rh5BG464300 Rh5CG485500 Rh5CG486000 Rh5CG486300 Rh5DG477600 Rh5DG478000 Rh5DG478300
rosa_wichuraiana	Rw5G041670 Rw5G041680 Rw5G041710 Rw5G041720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	326, 461
AccII	CGCG	1 cut(s)	275
AciI	CCGC	5 cut(s)	63, 174, 273, 309, 420
AclWI	GGATC	2 cut(s)	228, 340
AcoI	YGGCCR	3 cut(s)	104, 261, 270
AcsI	RAATTY	1 cut(s)	208
AdeI	CACNNNGTG	1 cut(s)	113
AfeI	AGCGCT	1 cut(s)	148
AfiI	CCNNNNNNNGG	1 cut(s)	305
AflIII	ACRYGT	2 cut(s)	576, 595
AgsI	TTSAA	2 cut(s)	208, 390
AjiI	CACGTC	1 cut(s)	579
AluBI	AGCT	3 cut(s)	367, 399, 443
AluI	AGCT	3 cut(s)	367, 399, 443
Alw21I	GWGCWC	1 cut(s)	203
Alw26I	GTCTC	2 cut(s)	292, 417
AlwI	GGATC	2 cut(s)	228, 340
Ama87I	CYCGRG	1 cut(s)	118
Aor51HI	AGCGCT	1 cut(s)	148
AoxI	GGCC	4 cut(s)	38, 104, 261, 270
ApeKI	GCWGC	4 cut(s)	68, 144, 280, 440
ApoI	RAATTY	1 cut(s)	208
AspLEI	GCGC	2 cut(s)	149, 377
AspS9I	GGNCC	1 cut(s)	303
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	2 cut(s)	285, 361
AvaI	CYCGRG	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	303
AxyI	CCTNAGG	1 cut(s)	35
BalI	TGGCCA	1 cut(s)	263
BanI	GGYRCC	2 cut(s)	326, 461
BanII	GRGCYC	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	203
BbvI	GCAGC	4 cut(s)	55, 156, 292, 452
BccI	CCATC	6 cut(s)	53, 250, 272, 487, 511, 563
BceAI	ACGGC	3 cut(s)	25, 196, 328
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	292, 417
BfoI	RGCGCY	1 cut(s)	150
BglI	GCCNNNNNGGC	1 cut(s)	269
BisI	GCNGC	6 cut(s)	69, 145, 175, 273, 281, 441
BlsI	GCNGC	6 cut(s)	70, 146, 176, 274, 282, 442
Bme1390I	CCNGG	1 cut(s)	103
Bme18I	GGWCC	1 cut(s)	303
BmeT110I	CYCGRG	1 cut(s)	118
BmgBI	CACGTC	1 cut(s)	579
BmgT120I	GGNCC	1 cut(s)	303
BmiI	GGNNCC	2 cut(s)	328, 463
BmrFI	CCNGG	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	224
BpuEI	CTTGAG	1 cut(s)	7
BpuMI	CCSGG	1 cut(s)	103
Bsa29I	ATCGAT	1 cut(s)	47
BsaAI	YACGTR	1 cut(s)	110
BsaJI	CCNNGG	3 cut(s)	169, 299, 344
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse118I	RCCGGY	1 cut(s)	410
Bse21I	CCTNAGG	1 cut(s)	35
BseCI	ATCGAT	1 cut(s)	47
BseDI	CCNNGG	3 cut(s)	169, 299, 344
BseGI	GGATG	3 cut(s)	522, 574, 581
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMII	CTCAG	2 cut(s)	266, 494
BseRI	GAGGAG	3 cut(s)	158, 280, 520
BseXI	GCAGC	4 cut(s)	55, 156, 292, 452
Bsh1236I	CGCG	1 cut(s)	275
BshFI	GGCC	4 cut(s)	40, 106, 263, 272
BshNI	GGYRCC	2 cut(s)	326, 461
BshVI	ATCGAT	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	203
BsiHKCI	CYCGRG	1 cut(s)	118
BsiSI	CCGG	5 cut(s)	103, 306, 330, 411, 465
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	2 cut(s)	292, 417
BsmBI	CGTCTC	1 cut(s)	417
BsmFI	GGGAC	1 cut(s)	331
BsmI	GAATGC	1 cut(s)	474
BsnI	GGCC	4 cut(s)	40, 106, 263, 272
BsoBI	CYCGRG	1 cut(s)	118
Bsp1286I	GDGCHC	2 cut(s)	125, 203
Bsp143I	GATC	3 cut(s)	48, 220, 332
Bsp19I	CCATGG	1 cut(s)	299
BspACI	CCGC	5 cut(s)	63, 174, 273, 309, 420
BspANI	GGCC	4 cut(s)	40, 106, 263, 272
BspCNI	CTCAG	2 cut(s)	265, 495
BspDI	ATCGAT	1 cut(s)	47
BspFNI	CGCG	1 cut(s)	275
BspLI	GGNNCC	2 cut(s)	328, 463
BspPI	GGATC	2 cut(s)	228, 340
BspT107I	GGYRCC	2 cut(s)	326, 461
BsrFI	RCCGGY	1 cut(s)	410
BssAI	RCCGGY	1 cut(s)	410
BssECI	CCNNGG	3 cut(s)	169, 299, 344
BssMI	GATC	3 cut(s)	48, 220, 332
BssT1I	CCWWGG	1 cut(s)	299
Bst6I	CTCTTC	1 cut(s)	552
BstBAI	YACGTR	1 cut(s)	110
BstC8I	GCNNGC	3 cut(s)	384, 412, 438
BstDEI	CTNAG	3 cut(s)	35, 252, 503
BstDSI	CCRYGG	2 cut(s)	299, 344
BstF5I	GGATG	3 cut(s)	522, 574, 581
BstFNI	CGCG	1 cut(s)	275
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	2 cut(s)	149, 377
BstKTI	GATC	3 cut(s)	51, 223, 335
BstMAI	GTCTC	2 cut(s)	292, 417
BstMBI	GATC	3 cut(s)	48, 220, 332
BstMWI	GCNNNNNNNGC	3 cut(s)	180, 269, 383
BstNSI	RCATGY	1 cut(s)	599
BstSCI	CCNGG	1 cut(s)	101
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	4 cut(s)	55, 156, 292, 452
BstV2I	GAAGAC	1 cut(s)	224
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
Bsu15I	ATCGAT	1 cut(s)	47
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	4 cut(s)	40, 106, 263, 272
BsuTUI	ATCGAT	1 cut(s)	47
BtgI	CCRYGG	2 cut(s)	299, 344
BtrI	CACGTC	1 cut(s)	579
BtsCI	GGATG	3 cut(s)	522, 574, 581
BtsI	GCAGTG	1 cut(s)	421
BtsIMutI	CAGTG	3 cut(s)	421, 488, 500
Cac8I	GCNNGC	3 cut(s)	384, 412, 438
CfoI	GCGC	2 cut(s)	149, 377
Cfr10I	RCCGGY	1 cut(s)	410
Cfr13I	GGNCC	1 cut(s)	303
ClaI	ATCGAT	1 cut(s)	47
CseI	GACGC	1 cut(s)	13
CviAII	CATG	3 cut(s)	213, 300, 596
DdeI	CTNAG	3 cut(s)	35, 252, 503
DpnI	GATC	3 cut(s)	50, 222, 334
DpnII	GATC	3 cut(s)	48, 220, 332
DraIII	CACNNNGTG	1 cut(s)	113
EaeI	YGGCCR	3 cut(s)	104, 261, 270
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
EciI	GGCGGA	2 cut(s)	324, 435
Eco130I	CCWWGG	1 cut(s)	299
Eco24I	GRGCYC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	303
Eco47III	AGCGCT	1 cut(s)	148
Eco81I	CCTNAGG	1 cut(s)	35
Eco88I	CYCGRG	1 cut(s)	118
EcoRI	GAATTC	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	299
EcoT38I	GRGCYC	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	299
Esp3I	CGTCTC	1 cut(s)	417
FaeI	CATG	3 cut(s)	216, 303, 599
FaiI	YATR	4 cut(s)	214, 301, 450, 597
FalI	AAGNNNNNCTT	2 cut(s)	370, 402
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	3 cut(s)	212, 299, 595
Fnu4HI	GCNGC	6 cut(s)	69, 145, 175, 273, 281, 441
FokI	GGATG	3 cut(s)	529, 568, 581
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	6 cut(s)	69, 145, 175, 273, 281, 441
GlaI	GCGC	2 cut(s)	148, 376
GluI	GCNGC	6 cut(s)	69, 145, 175, 273, 281, 441
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	4 cut(s)	40, 106, 263, 272
HapII	CCGG	5 cut(s)	103, 306, 330, 411, 465
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	2 cut(s)	149, 377
Hin1II	CATG	3 cut(s)	216, 303, 599
Hin6I	GCGC	2 cut(s)	147, 375
HinP1I	GCGC	2 cut(s)	147, 375
HinfI	GANTC	2 cut(s)	82, 116
HpaII	CCGG	5 cut(s)	103, 306, 330, 411, 465
HphI	GGTGA	2 cut(s)	285, 361
Hpy188I	TCNGA	2 cut(s)	81, 255
Hpy188III	TCNNGA	1 cut(s)	24
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	130
HpyCH4IV	ACGT	2 cut(s)	109, 578
HpyCH4V	TGCA	4 cut(s)	71, 280, 436, 472
HpyF10VI	GCNNNNNNNGC	3 cut(s)	180, 269, 383
HpyF3I	CTNAG	3 cut(s)	35, 252, 503
HpySE526I	ACGT	2 cut(s)	109, 578
Hsp92II	CATG	3 cut(s)	216, 303, 599
HspAI	GCGC	2 cut(s)	147, 375
KroI	GCCGGC	1 cut(s)	410
KroNI	GCCGGC	1 cut(s)	412
Kzo9I	GATC	3 cut(s)	48, 220, 332
LmnI	GCTCC	1 cut(s)	206
Lsp1109I	GCAGC	4 cut(s)	55, 156, 292, 452
MaeII	ACGT	2 cut(s)	109, 578
MaeIII	GTNAC	3 cut(s)	28, 113, 349
MalI	GATC	3 cut(s)	50, 222, 334
MboI	GATC	3 cut(s)	48, 220, 332
MboII	GAAGA	2 cut(s)	224, 569
MflI	RGATCY	1 cut(s)	332
MhlI	GDGCHC	2 cut(s)	125, 203
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	3 cut(s)	130, 208, 358
MluNI	TGGCCA	1 cut(s)	263
MlyI	GAGTC	2 cut(s)	76, 110
Mox20I	TGGCCA	1 cut(s)	263
MroNI	GCCGGC	1 cut(s)	410
MscI	TGGCCA	1 cut(s)	263
MslI	CAYNNNNRTG	1 cut(s)	298
Msp20I	TGGCCA	1 cut(s)	263
MspI	CCGG	5 cut(s)	103, 306, 330, 411, 465
MspR9I	CCNGG	1 cut(s)	103
Mva1269I	GAATGC	1 cut(s)	474
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	3 cut(s)	180, 269, 383
NaeI	GCCGGC	1 cut(s)	412
NciI	CCSGG	1 cut(s)	103
NcoI	CCATGG	1 cut(s)	299
NdeII	GATC	3 cut(s)	48, 220, 332
NgoMIV	GCCGGC	1 cut(s)	410
NlaIII	CATG	3 cut(s)	216, 303, 599
NlaIV	GGNNCC	2 cut(s)	328, 463
NmeAIII	GCCGAG	1 cut(s)	150
NmuCI	GTSAC	2 cut(s)	113, 349
NspI	RCATGY	1 cut(s)	599
PciI	ACATGT	1 cut(s)	595
PctI	GAATGC	1 cut(s)	474
PdiI	GCCGGC	1 cut(s)	412
PkrI	GCNGC	6 cut(s)	70, 146, 176, 274, 282, 442
PleI	GAGTC	2 cut(s)	76, 110
PpsI	GAGTC	2 cut(s)	76, 110
Ppu21I	YACGTR	1 cut(s)	110
PscI	ACATGT	1 cut(s)	595
PspN4I	GGNNCC	2 cut(s)	328, 463
PspPI	GGNCC	1 cut(s)	303
PsuI	RGATCY	1 cut(s)	332
RseI	CAYNNNNRTG	1 cut(s)	298
SatI	GCNGC	6 cut(s)	69, 145, 175, 273, 281, 441
Sau3AI	GATC	3 cut(s)	48, 220, 332
Sau96I	GGNCC	1 cut(s)	303
SchI	GAGTC	2 cut(s)	76, 110
ScrFI	CCNGG	1 cut(s)	103
SduI	GDGCHC	2 cut(s)	125, 203
SetI	ASST	9 cut(s)	99, 112, 298, 369, 401, 445, 481, 530, 581
SfiI	GGCCNNNNNGGCC	1 cut(s)	269
SinI	GGWCC	1 cut(s)	303
SmiMI	CAYNNNNRTG	1 cut(s)	298
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
Sse9I	AATT	3 cut(s)	130, 208, 358
SsiI	CCGC	5 cut(s)	63, 174, 273, 309, 420
StyD4I	CCNGG	1 cut(s)	101
StyI	CCWWGG	1 cut(s)	299
TaiI	ACGT	2 cut(s)	112, 581
TaqI	TCGA	1 cut(s)	47
TaqII	GACCGA	1 cut(s)	259
TasI	AATT	3 cut(s)	130, 208, 358
TauI	GCSGC	2 cut(s)	177, 275
TscAI	CASTG	3 cut(s)	421, 495, 507
TseFI	GTSAC	2 cut(s)	113, 349
TseI	GCWGC	4 cut(s)	68, 144, 280, 440
Tsp45I	GTSAC	2 cut(s)	113, 349
TspDTI	ATGAA	3 cut(s)	201, 566, 570
TspGWI	ACGGA	1 cut(s)	441
TspRI	CASTG	3 cut(s)	421, 495, 507
VpaK11BI	GGWCC	1 cut(s)	303
XapI	RAATTY	1 cut(s)	208
XceI	RCATGY	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.