Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0007762

Physical Location & Seq

Genomic Coordinates Reverse (-)

6565198 .. 6566774

Gene Structure 1577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1081600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAATGGCTATTTAGAACCCAGAAGGAATTTCAATGATAACCAATCTGTAGGAACGTCTGGAAGCGTATCATGTCCAATAACTGCAAGCTTAAACCAAGAAGATAAGTCCAAATCAAGAAAGCCTCGTTTGTCCTATGCTCATCTCCATCATGAGATTACAAAGAATATAAATGCTATCCCACCTGATTCTGTTGGGCACAACCAAAAGCAGCGGATTAGTAAAAGGAAAACGGAAGAAGATGAGCTTATTAAGTACATGTCAAAGTTGCCAAGTTATCTTGAGAGGGGAAAAAACCTTCAGGAGAAAGTTTTAAATATCGGTGTCCTAGACTGGGGGCGCCTAGAAAAATGGCAGCATAGCCATAAACAGATGCCATACGGAAGTAGCAGGTATTCACCGCCAAGTAGTAATACAACCTCATGTTTTTCGACAGATGAATCATCAACCCCTTCTAGCCGAGGCCACAGTTGTTCTCCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3527

Protein Analysis

162

Amino Acids

18.16

Weight (kDa)

9.4

Isoelectric Point (pI)

70.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29510 AT5G59020
fragaria_vesca	FvH4_3g37380
malus_domestica	MD03G1081200.v1.1 MD03G1081600.v1.1 MD11G1084800.v1.1
prunus_persica	Prupe.6G065800_v2.0.a1 Prupe.6G065800_v2.0.a1 Prupe.6G065800_v2.0.a1 Prupe.6G065800_v2.0.a1
pyrus_communis	pycom03g06480 pycom11g07330
rosa_chinensis	RchiOBHm_Chr5g0067231
rosa_laevigata	RLG00000035917
rosa_multiflora	Rmu_sc0000015.1_g000018
rosa_roxburghii	Rroxscaffold_1G00013900
rosa_rugosa	Rorug05G0382800 Rorug05G0382900 Rorug05G0383000
rosa_samantha	Rh5AG442500 Rh5BG459600 Rh5CG482000 Rh5DG474500
rosa_wichuraiana	Rw5G041350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	381
AccB1I	GGYRCC	1 cut(s)	339
AciI	CCGC	2 cut(s)	214, 401
AcsI	RAATTY	1 cut(s)	28
AcuI	CTGAAG	1 cut(s)	284
AcyI	GRCGYC	1 cut(s)	340
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	334
AflIII	ACRYGT	1 cut(s)	258
AgsI	TTSAA	1 cut(s)	34
AluBI	AGCT	2 cut(s)	90, 247
AluI	AGCT	2 cut(s)	90, 247
AoxI	GGCC	1 cut(s)	463
ApeKI	GCWGC	2 cut(s)	211, 355
ApoI	RAATTY	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	342
AsuHPI	GGTGA	1 cut(s)	390
BaeGI	GKGCMC	1 cut(s)	201
BanI	GGYRCC	1 cut(s)	339
BbvI	GCAGC	2 cut(s)	223, 367
BccI	CCATC	1 cut(s)	156
BfaI	CTAG	3 cut(s)	329, 344, 456
BfmI	CTRYAG	1 cut(s)	48
BfoI	RGCGCY	1 cut(s)	343
BfuAI	ACCTGC	1 cut(s)	381
BisI	GCNGC	2 cut(s)	212, 356
BlsI	GCNGC	2 cut(s)	213, 357
BmiI	GGNNCC	1 cut(s)	341
BmrI	ACTGGG	1 cut(s)	343
BmsI	GCATC	1 cut(s)	363
BmuI	ACTGGG	1 cut(s)	343
BpuEI	CTTGAG	1 cut(s)	302
BsaHI	GRCGYC	1 cut(s)	340
BsaJI	CCNNGG	1 cut(s)	460
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
Bse1I	ACTGG	1 cut(s)	338
BseDI	CCNNGG	1 cut(s)	460
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseNI	ACTGG	1 cut(s)	338
BseSI	GKGCMC	1 cut(s)	201
BseXI	GCAGC	2 cut(s)	223, 367
BshFI	GGCC	1 cut(s)	465
BshNI	GGYRCC	1 cut(s)	339
BslI	CCNNNNNNNGG	1 cut(s)	334
BsnI	GGCC	1 cut(s)	465
Bsp1286I	GDGCHC	1 cut(s)	201
BspACI	CCGC	2 cut(s)	214, 401
BspANI	GGCC	1 cut(s)	465
BspHI	TCATGA	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	341
BspMI	ACCTGC	1 cut(s)	381
BspT107I	GGYRCC	1 cut(s)	339
BsrI	ACTGG	1 cut(s)	338
BssECI	CCNNGG	1 cut(s)	460
BssNI	GRCGYC	1 cut(s)	340
Bst4CI	ACNGT	1 cut(s)	470
BstACI	GRCGYC	1 cut(s)	340
BstC8I	GCNNGC	1 cut(s)	88
BstH2I	RGCGCY	1 cut(s)	343
BstHHI	GCGC	1 cut(s)	342
BstNSI	RCATGY	1 cut(s)	262
BstSFI	CTRYAG	1 cut(s)	48
BstSLI	GKGCMC	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	223, 367
BsuRI	GGCC	1 cut(s)	465
BveI	ACCTGC	1 cut(s)	381
Cac8I	GCNNGC	1 cut(s)	88
CciI	TCATGA	1 cut(s)	151
CfoI	GCGC	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	4 cut(s)	72, 152, 259, 423
CviJI	RGCY	7 cut(s)	9, 90, 124, 247, 363, 459, 465
CviKI_1	RGCY	7 cut(s)	9, 90, 124, 247, 363, 459, 465
CviQI	GTAC	1 cut(s)	256
DinI	GGCGCC	1 cut(s)	341
DraI	TTTAAA	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	284
EgeI	GGCGCC	1 cut(s)	341
EheI	GGCGCC	1 cut(s)	341
FaeI	CATG	4 cut(s)	75, 155, 262, 426
FaiI	YATR	9 cut(s)	73, 138, 153, 170, 260, 360, 366, 379, 424
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FatI	CATG	4 cut(s)	71, 151, 258, 422
Fnu4HI	GCNGC	2 cut(s)	212, 356
Fsp4HI	GCNGC	2 cut(s)	212, 356
FspBI	CTAG	3 cut(s)	329, 344, 456
GlaI	GCGC	1 cut(s)	341
GluI	GCNGC	2 cut(s)	212, 356
HaeII	RGCGCY	1 cut(s)	343
HaeIII	GGCC	1 cut(s)	465
HhaI	GCGC	1 cut(s)	342
Hin1I	GRCGYC	1 cut(s)	340
Hin1II	CATG	4 cut(s)	75, 155, 262, 426
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
HindIII	AAGCTT	1 cut(s)	88
HinfI	GANTC	2 cut(s)	188, 440
HphI	GGTGA	1 cut(s)	390
Hpy188III	TCNNGA	5 cut(s)	60, 117, 152, 281, 302
HpyAV	CCTTC	3 cut(s)	18, 308, 462
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	1 cut(s)	86
HpySE526I	ACGT	1 cut(s)	56
Hsp92I	GRCGYC	1 cut(s)	340
Hsp92II	CATG	4 cut(s)	75, 155, 262, 426
HspAI	GCGC	1 cut(s)	340
KasI	GGCGCC	1 cut(s)	339
LpnPI	CCDG	6 cut(s)	34, 45, 198, 287, 319, 376
Lsp1109I	GCAGC	2 cut(s)	223, 367
LweI	GCATC	1 cut(s)	363
MaeI	CTAG	3 cut(s)	329, 344, 456
MaeII	ACGT	1 cut(s)	56
MboII	GAAGA	3 cut(s)	113, 248, 251
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	1 cut(s)	28
Mly113I	GGCGCC	1 cut(s)	340
MnlI	CCTC	4 cut(s)	135, 279, 430, 455
MseI	TTAA	3 cut(s)	92, 252, 314
MspA1I	CMGCKG	1 cut(s)	214
NarI	GGCGCC	1 cut(s)	340
NlaIII	CATG	4 cut(s)	75, 155, 262, 426
NlaIV	GGNNCC	1 cut(s)	341
NmeAIII	GCCGAG	1 cut(s)	485
NspI	RCATGY	1 cut(s)	262
PagI	TCATGA	1 cut(s)	151
PciI	ACATGT	1 cut(s)	258
PfeI	GAWTC	2 cut(s)	188, 440
PkrI	GCNGC	2 cut(s)	213, 357
PluTI	GGCGCC	1 cut(s)	343
PscI	ACATGT	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	341
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	3 cut(s)	92, 252, 314
SatI	GCNGC	2 cut(s)	212, 356
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	7 cut(s)	59, 92, 187, 249, 300, 395, 422
SfaNI	GCATC	1 cut(s)	363
SfcI	CTRYAG	1 cut(s)	48
SfoI	GGCGCC	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	1 cut(s)	28
SsiI	CCGC	2 cut(s)	214, 401
SspDI	GGCGCC	1 cut(s)	339
SspMI	CTAG	3 cut(s)	329, 344, 456
TaaI	ACNGT	1 cut(s)	470
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	1 cut(s)	431
TasI	AATT	1 cut(s)	28
TatI	WGTACW	1 cut(s)	255
TfiI	GAWTC	2 cut(s)	188, 440
Tru1I	TTAA	3 cut(s)	92, 252, 314
Tru9I	TTAA	3 cut(s)	92, 252, 314
TseI	GCWGC	2 cut(s)	211, 355
TspDTI	ATGAA	2 cut(s)	17, 453
TspGWI	ACGGA	2 cut(s)	248, 396
XapI	RAATTY	1 cut(s)	28
XceI	RCATGY	1 cut(s)	262
XspI	CTAG	3 cut(s)	329, 344, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.