Domain of unknown function (DUF3527)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G29510 AT5G59020 |
| fragaria_vesca | FvH4_3g37380 |
| malus_domestica | MD03G1081200.v1.1 MD03G1081600.v1.1 MD11G1084800.v1.1 |
| prunus_persica | Prupe.6G065800_v2.0.a1 Prupe.6G065800_v2.0.a1 Prupe.6G065800_v2.0.a1 Prupe.6G065800_v2.0.a1 |
| pyrus_communis | pycom03g06480 pycom11g07330 |
| rosa_chinensis | RchiOBHm_Chr5g0067231 |
| rosa_laevigata | RLG00000035917 |
| rosa_multiflora | Rmu_sc0000015.1_g000018 |
| rosa_roxburghii | Rroxscaffold_1G00013900 |
| rosa_rugosa | Rorug05G0382800 Rorug05G0382900 Rorug05G0383000 |
| rosa_samantha | Rh5AG442500 Rh5BG459600 Rh5CG482000 Rh5DG474500 |
| rosa_wichuraiana | Rw5G041350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 339 |
| AciI | CCGC | 8 cut(s) | 736, 826, 1333, 1458, 1580, 1772, 1903, 2210 |
| AclWI | GGATC | 5 cut(s) | 600, 1282, 1532, 1545, 2037 |
| AcsI | RAATTY | 4 cut(s) | 28, 769, 844, 2470 |
| AcuI | CTGAAG | 9 cut(s) | 255, 570, 885, 1078, 1095, 1374, 1458, 1568, 1879 |
| AcyI | GRCGYC | 3 cut(s) | 340, 2179, 2245 |
| AfaI | GTAC | 2 cut(s) | 2271, 2389 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 539, 725, 1185, 1271, 1439, 2077, 2213, 2288, 2354 |
| AgsI | TTSAA | 9 cut(s) | 94, 112, 347, 851, 1217, 1251, 1852, 2378, 2496 |
| AjnI | CCWGG | 5 cut(s) | 300, 1422, 1432, 1508, 1663 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 948, 980 |
| Alw21I | GWGCWC | 3 cut(s) | 1038, 2338, 2537 |
| Alw26I | GTCTC | 6 cut(s) | 184, 628, 1003, 1052, 1197, 2236 |
| AlwI | GGATC | 5 cut(s) | 600, 1282, 1532, 1545, 2037 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1481, 2129 |
| Ama87I | CYCGRG | 1 cut(s) | 792 |
| AoxI | GGCC | 5 cut(s) | 542, 1020, 1739, 1783, 2299 |
| ApeKI | GCWGC | 9 cut(s) | 211, 761, 829, 977, 1118, 1128, 1660, 1832, 2123 |
| ApoI | RAATTY | 4 cut(s) | 28, 769, 844, 2470 |
| AseI | ATTAAT | 1 cut(s) | 219 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 697, 919, 1968 |
| AspA2I | CCTAGG | 1 cut(s) | 1406 |
| AspLEI | GCGC | 2 cut(s) | 75, 342 |
| AspS9I | GGNCC | 4 cut(s) | 542, 1512, 2299, 2360 |
| AsuHPI | GGTGA | 6 cut(s) | 174, 390, 812, 1317, 1880, 2251 |
| AvaI | CYCGRG | 1 cut(s) | 792 |
| AvaII | GGWCC | 2 cut(s) | 1512, 2360 |
| AvrII | CCTAGG | 1 cut(s) | 1406 |
| AxyI | CCTNAGG | 1 cut(s) | 1858 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1221, 1254 |
| BamHI | GGATCC | 1 cut(s) | 1537 |
| BanI | GGYRCC | 1 cut(s) | 339 |
| BanII | GRGCYC | 3 cut(s) | 21, 1038, 1196 |
| BbsI | GAAGAC | 2 cut(s) | 1224, 2336 |
| Bbv12I | GWGCWC | 3 cut(s) | 1038, 2338, 2537 |
| BbvI | GCAGC | 9 cut(s) | 223, 773, 841, 964, 1130, 1140, 1672, 1819, 2135 |
| BceAI | ACGGC | 2 cut(s) | 1047, 1120 |
| BciT130I | CCWGG | 5 cut(s) | 302, 1424, 1434, 1510, 1665 |
| BciVI | GTATCC | 1 cut(s) | 1462 |
| BcoDI | GTCTC | 6 cut(s) | 184, 628, 1003, 1052, 1197, 2236 |
| BfaI | CTAG | 7 cut(s) | 126, 456, 854, 1407, 1428, 1500, 1679 |
| BfmI | CTRYAG | 5 cut(s) | 897, 978, 1873, 2169, 2194 |
| BfoI | RGCGCY | 1 cut(s) | 343 |
| BfuI | GTATCC | 1 cut(s) | 1462 |
| BglII | AGATCT | 1 cut(s) | 901 |
| BlnI | CCTAGG | 1 cut(s) | 1406 |
| BlpI | GCTNAGC | 1 cut(s) | 1153 |
| Bme1390I | CCNGG | 5 cut(s) | 302, 1424, 1434, 1510, 1665 |
| Bme18I | GGWCC | 2 cut(s) | 1512, 2360 |
| BmeT110I | CYCGRG | 1 cut(s) | 792 |
| BmgT120I | GGNCC | 4 cut(s) | 542, 1512, 2299, 2360 |
| BmiI | GGNNCC | 5 cut(s) | 200, 341, 1108, 1539, 1584 |
| BmrFI | CCNGG | 5 cut(s) | 302, 1424, 1434, 1510, 1665 |
| BmrI | ACTGGG | 1 cut(s) | 343 |
| BmsI | GCATC | 3 cut(s) | 363, 483, 1166 |
| BmuI | ACTGGG | 1 cut(s) | 343 |
| BpiI | GAAGAC | 2 cut(s) | 1224, 2336 |
| BpmI | CTGGAG | 1 cut(s) | 284 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1153 |
| BpuEI | CTTGAG | 2 cut(s) | 302, 1737 |
| BsaBI | GATNNNNATC | 1 cut(s) | 147 |
| BsaHI | GRCGYC | 3 cut(s) | 340, 2179, 2245 |
| BsaI | GGTCTC | 3 cut(s) | 628, 1003, 1052 |
| BsaJI | CCNNGG | 4 cut(s) | 1014, 1110, 1406, 1664 |
| BsaWI | WCCGGW | 1 cut(s) | 1373 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2377, 2407 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 539, 725, 1185, 1271, 1439, 2077, 2213, 2288, 2354 |
| Bse118I | RCCGGY | 1 cut(s) | 390 |
| Bse1I | ACTGG | 7 cut(s) | 338, 405, 540, 1539, 1693, 2031, 2463 |
| Bse21I | CCTNAGG | 1 cut(s) | 1858 |
| Bse3DI | GCAATG | 2 cut(s) | 68, 1344 |
| Bse8I | GATNNNNATC | 1 cut(s) | 147 |
| BseBI | CCWGG | 5 cut(s) | 302, 1424, 1434, 1510, 1665 |
| BseDI | CCNNGG | 4 cut(s) | 1014, 1110, 1406, 1664 |
| BseGI | GGATG | 5 cut(s) | 10, 401, 498, 1194, 1196 |
| BseJI | GATNNNNATC | 1 cut(s) | 147 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 539, 725, 1185, 1271, 1439, 2077, 2213, 2288, 2354 |
| BseMI | GCAATG | 2 cut(s) | 68, 1344 |
| BseMII | CTCAG | 8 cut(s) | 705, 1167, 1514, 1623, 1647, 1872, 1925, 2109 |
| BseNI | ACTGG | 7 cut(s) | 338, 405, 540, 1539, 1693, 2031, 2463 |
| BseRI | GAGGAG | 2 cut(s) | 1540, 2167 |
| BseXI | GCAGC | 9 cut(s) | 223, 773, 841, 964, 1130, 1140, 1672, 1819, 2135 |
| BsgI | GTGCAG | 1 cut(s) | 1137 |
| BshFI | GGCC | 5 cut(s) | 544, 1022, 1741, 1785, 2301 |
| BshNI | GGYRCC | 1 cut(s) | 339 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1038, 2338, 2537 |
| BsiHKCI | CYCGRG | 1 cut(s) | 792 |
| BsiSI | CCGG | 2 cut(s) | 391, 1374 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 539, 725, 1185, 1271, 1439, 2077, 2213, 2288, 2354 |
| BsmAI | GTCTC | 6 cut(s) | 184, 628, 1003, 1052, 1197, 2236 |
| BsmBI | CGTCTC | 1 cut(s) | 2236 |
| BsnI | GGCC | 5 cut(s) | 544, 1022, 1741, 1785, 2301 |
| Bso31I | GGTCTC | 3 cut(s) | 628, 1003, 1052 |
| BsoBI | CYCGRG | 1 cut(s) | 792 |
| Bsp1286I | GDGCHC | 5 cut(s) | 21, 1038, 1196, 2338, 2537 |
| Bsp1407I | TGTACA | 1 cut(s) | 2269 |
| Bsp143I | GATC | 7 cut(s) | 142, 592, 901, 1274, 1537, 2029, 2503 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1153 |
| BspACI | CCGC | 8 cut(s) | 736, 826, 1333, 1458, 1580, 1772, 1903, 2210 |
| BspANI | GGCC | 5 cut(s) | 544, 1022, 1741, 1785, 2301 |
| BspCNI | CTCAG | 8 cut(s) | 706, 1166, 1515, 1624, 1648, 1871, 1926, 2108 |
| BspHI | TCATGA | 3 cut(s) | 151, 630, 1960 |
| BspLI | GGNNCC | 5 cut(s) | 200, 341, 1108, 1539, 1584 |
| BspMAI | CTGCAG | 2 cut(s) | 982, 1877 |
| BspPI | GGATC | 5 cut(s) | 600, 1282, 1532, 1545, 2037 |
| BspQI | GCTCTTC | 1 cut(s) | 1764 |
| BspT107I | GGYRCC | 1 cut(s) | 339 |
| BspTNI | GGTCTC | 3 cut(s) | 628, 1003, 1052 |
| BsrDI | GCAATG | 2 cut(s) | 68, 1344 |
| BsrFI | RCCGGY | 1 cut(s) | 390 |
| BsrGI | TGTACA | 1 cut(s) | 2269 |
| BsrI | ACTGG | 7 cut(s) | 338, 405, 540, 1539, 1693, 2031, 2463 |
| BssAI | RCCGGY | 1 cut(s) | 390 |
| BssECI | CCNNGG | 4 cut(s) | 1014, 1110, 1406, 1664 |
| BssMI | GATC | 7 cut(s) | 142, 592, 901, 1274, 1537, 2029, 2503 |
| BssNI | GRCGYC | 3 cut(s) | 340, 2179, 2245 |
| BssT1I | CCWWGG | 2 cut(s) | 1014, 1406 |
| Bst2UI | CCWGG | 5 cut(s) | 302, 1424, 1434, 1510, 1665 |
| Bst4CI | ACNGT | 8 cut(s) | 500, 684, 1164, 1255, 2010, 2131, 2317, 2408 |
| Bst6I | CTCTTC | 1 cut(s) | 1764 |
| BstACI | GRCGYC | 3 cut(s) | 340, 2179, 2245 |
| BstAUI | TGTACA | 1 cut(s) | 2269 |
| BstC8I | GCNNGC | 6 cut(s) | 746, 1001, 1787, 1901, 2208, 2279 |
| BstDSI | CCRYGG | 1 cut(s) | 1110 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 1183, 1269, 2075 |
| BstF5I | GGATG | 5 cut(s) | 10, 401, 498, 1194, 1196 |
| BstH2I | RGCGCY | 1 cut(s) | 343 |
| BstHHI | GCGC | 2 cut(s) | 75, 342 |
| BstKTI | GATC | 7 cut(s) | 145, 595, 904, 1277, 1540, 2032, 2506 |
| BstMAI | GTCTC | 6 cut(s) | 184, 628, 1003, 1052, 1197, 2236 |
| BstMBI | GATC | 7 cut(s) | 142, 592, 901, 1274, 1537, 2029, 2503 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 16, 1028, 1341, 2307 |
| BstNI | CCWGG | 5 cut(s) | 302, 1424, 1434, 1510, 1665 |
| BstSCI | CCNGG | 5 cut(s) | 300, 1422, 1432, 1508, 1663 |
| BstSFI | CTRYAG | 5 cut(s) | 897, 978, 1873, 2169, 2194 |
| BstV1I | GCAGC | 9 cut(s) | 223, 773, 841, 964, 1130, 1140, 1672, 1819, 2135 |
| BstV2I | GAAGAC | 2 cut(s) | 1224, 2336 |
| BstX2I | RGATCY | 3 cut(s) | 592, 901, 1537 |
| BstYI | RGATCY | 3 cut(s) | 592, 901, 1537 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1858 |
| BsuI | GTATCC | 1 cut(s) | 1462 |
| BsuRI | GGCC | 5 cut(s) | 544, 1022, 1741, 1785, 2301 |
| BtgI | CCRYGG | 1 cut(s) | 1110 |
| BtsCI | GGATG | 5 cut(s) | 10, 401, 498, 1194, 1196 |
| BtsI | GCAGTG | 3 cut(s) | 755, 959, 1541 |
| Cac8I | GCNNGC | 6 cut(s) | 746, 1001, 1787, 1901, 2208, 2279 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1481, 2129 |
| CciI | TCATGA | 3 cut(s) | 151, 630, 1960 |
| CfoI | GCGC | 2 cut(s) | 75, 342 |
| Cfr10I | RCCGGY | 1 cut(s) | 390 |
| Cfr13I | GGNCC | 4 cut(s) | 542, 1512, 2299, 2360 |
| CseI | GACGC | 2 cut(s) | 2168, 2253 |
| CsiI | ACCWGGT | 1 cut(s) | 1432 |
| Csp6I | GTAC | 2 cut(s) | 2270, 2388 |
| CviAII | CATG | 8 cut(s) | 152, 187, 423, 631, 1684, 1940, 1961, 2400 |
| CviQI | GTAC | 2 cut(s) | 2270, 2388 |
| DinI | GGCGCC | 1 cut(s) | 341 |
| DpnI | GATC | 7 cut(s) | 144, 594, 903, 1276, 1539, 2031, 2505 |
| DpnII | GATC | 7 cut(s) | 142, 592, 901, 1274, 1537, 2029, 2503 |
| DraI | TTTAAA | 1 cut(s) | 315 |
| Eam1104I | CTCTTC | 1 cut(s) | 1764 |
| EarI | CTCTTC | 1 cut(s) | 1764 |
| EciI | GGCGGA | 1 cut(s) | 1322 |
| Ecl136II | GAGCTC | 1 cut(s) | 1036 |
| Eco130I | CCWWGG | 2 cut(s) | 1014, 1406 |
| Eco147I | AGGCCT | 1 cut(s) | 1022 |
| Eco24I | GRGCYC | 3 cut(s) | 21, 1038, 1196 |
| Eco31I | GGTCTC | 3 cut(s) | 628, 1003, 1052 |
| Eco32I | GATATC | 1 cut(s) | 2191 |
| Eco47I | GGWCC | 2 cut(s) | 1512, 2360 |
| Eco53kI | GAGCTC | 1 cut(s) | 1036 |
| Eco57I | CTGAAG | 9 cut(s) | 255, 570, 885, 1078, 1095, 1374, 1458, 1568, 1879 |
| Eco81I | CCTNAGG | 1 cut(s) | 1858 |
| Eco88I | CYCGRG | 1 cut(s) | 792 |
| EcoICRI | GAGCTC | 1 cut(s) | 1036 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 1183, 1269, 2075 |
| EcoO109I | RGGNCCY | 2 cut(s) | 542, 2299 |
| EcoRII | CCWGG | 5 cut(s) | 300, 1422, 1432, 1508, 1663 |
| EcoRV | GATATC | 1 cut(s) | 2191 |
| EcoT14I | CCWWGG | 2 cut(s) | 1014, 1406 |
| EcoT38I | GRGCYC | 3 cut(s) | 21, 1038, 1196 |
| EgeI | GGCGCC | 1 cut(s) | 341 |
| EheI | GGCGCC | 1 cut(s) | 341 |
| ErhI | CCWWGG | 2 cut(s) | 1014, 1406 |
| Esp3I | CGTCTC | 1 cut(s) | 2236 |
| FaeI | CATG | 8 cut(s) | 155, 190, 426, 634, 1687, 1943, 1964, 2403 |
| FatI | CATG | 8 cut(s) | 151, 186, 422, 630, 1683, 1939, 1960, 2399 |
| FauI | CCCGC | 1 cut(s) | 1896 |
| FokI | GGATG | 5 cut(s) | 17, 388, 505, 1183, 1201 |
| FriOI | GRGCYC | 3 cut(s) | 21, 1038, 1196 |
| FspBI | CTAG | 7 cut(s) | 126, 456, 854, 1407, 1428, 1500, 1679 |
| GlaI | GCGC | 2 cut(s) | 74, 341 |
| GsuI | CTGGAG | 1 cut(s) | 284 |
| HaeII | RGCGCY | 1 cut(s) | 343 |
| HaeIII | GGCC | 5 cut(s) | 544, 1022, 1741, 1785, 2301 |
| HapII | CCGG | 2 cut(s) | 391, 1374 |
| HgaI | GACGC | 2 cut(s) | 2168, 2253 |
| HhaI | GCGC | 2 cut(s) | 75, 342 |
| Hin1I | GRCGYC | 3 cut(s) | 340, 2179, 2245 |
| Hin1II | CATG | 8 cut(s) | 155, 190, 426, 634, 1687, 1943, 1964, 2403 |
| Hin6I | GCGC | 2 cut(s) | 73, 340 |
| HinP1I | GCGC | 2 cut(s) | 73, 340 |
| HincII | GTYRAC | 2 cut(s) | 559, 1413 |
| HindII | GTYRAC | 2 cut(s) | 559, 1413 |
| HindIII | AAGCTT | 2 cut(s) | 309, 997 |
| HpaII | CCGG | 2 cut(s) | 391, 1374 |
| HphI | GGTGA | 6 cut(s) | 174, 390, 812, 1317, 1880, 2251 |
| Hpy166II | GTNNAC | 7 cut(s) | 559, 1088, 1102, 1413, 1797, 1810, 2068 |
| Hpy8I | GTNNAC | 7 cut(s) | 559, 1088, 1102, 1413, 1797, 1810, 2068 |
| Hpy99I | CGWCG | 2 cut(s) | 996, 2184 |
| HpyAV | CCTTC | 7 cut(s) | 513, 533, 555, 860, 1080, 1987, 2479 |
| HpyCH4III | ACNGT | 8 cut(s) | 500, 684, 1164, 1255, 2010, 2131, 2317, 2408 |
| HpyCH4IV | ACGT | 1 cut(s) | 1449 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 16, 1028, 1341, 2307 |
| HpySE526I | ACGT | 1 cut(s) | 1449 |
| Hsp92I | GRCGYC | 3 cut(s) | 340, 2179, 2245 |
| Hsp92II | CATG | 8 cut(s) | 155, 190, 426, 634, 1687, 1943, 1964, 2403 |
| HspAI | GCGC | 2 cut(s) | 73, 340 |
| KasI | GGCGCC | 1 cut(s) | 339 |
| Kzo9I | GATC | 7 cut(s) | 142, 592, 901, 1274, 1537, 2029, 2503 |
| LguI | GCTCTTC | 1 cut(s) | 1764 |
| LmnI | GCTCC | 2 cut(s) | 1112, 1582 |
| Lsp1109I | GCAGC | 9 cut(s) | 223, 773, 841, 964, 1130, 1140, 1672, 1819, 2135 |
| LweI | GCATC | 3 cut(s) | 363, 483, 1166 |
| MabI | ACCWGGT | 1 cut(s) | 1432 |
| MaeI | CTAG | 7 cut(s) | 126, 456, 854, 1407, 1428, 1500, 1679 |
| MaeII | ACGT | 1 cut(s) | 1449 |
| MaeIII | GTNAC | 9 cut(s) | 464, 523, 611, 1297, 1530, 1868, 2198, 2351, 2402 |
| MalI | GATC | 7 cut(s) | 144, 594, 903, 1276, 1539, 2031, 2505 |
| MboI | GATC | 7 cut(s) | 142, 592, 901, 1274, 1537, 2029, 2503 |
| MflI | RGATCY | 3 cut(s) | 592, 901, 1537 |
| MhlI | GDGCHC | 5 cut(s) | 21, 1038, 1196, 2338, 2537 |
| Mly113I | GGCGCC | 1 cut(s) | 340 |
| MlyI | GAGTC | 3 cut(s) | 636, 1945, 2164 |
| MmeI | TCCRAC | 3 cut(s) | 301, 559, 963 |
| MroXI | GAANNNNTTC | 3 cut(s) | 697, 919, 1968 |
| MseI | TTAA | 9 cut(s) | 219, 314, 597, 773, 1283, 1340, 1776, 1821, 2542 |
| MslI | CAYNNNNRTG | 2 cut(s) | 674, 1349 |
| MspA1I | CMGCKG | 1 cut(s) | 471 |
| MspI | CCGG | 2 cut(s) | 391, 1374 |
| MspR9I | CCNGG | 5 cut(s) | 302, 1424, 1434, 1510, 1665 |
| MvaI | CCWGG | 5 cut(s) | 302, 1424, 1434, 1510, 1665 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 16, 1028, 1341, 2307 |
| NarI | GGCGCC | 1 cut(s) | 340 |
| NdeII | GATC | 7 cut(s) | 142, 592, 901, 1274, 1537, 2029, 2503 |
| NlaIII | CATG | 8 cut(s) | 155, 190, 426, 634, 1687, 1943, 1964, 2403 |
| NlaIV | GGNNCC | 5 cut(s) | 200, 341, 1108, 1539, 1584 |
| NmuCI | GTSAC | 5 cut(s) | 464, 523, 1868, 2198, 2402 |
| PaeR7I | CTCGAG | 1 cut(s) | 792 |
| PagI | TCATGA | 3 cut(s) | 151, 630, 1960 |
| PceI | AGGCCT | 1 cut(s) | 1022 |
| PciSI | GCTCTTC | 1 cut(s) | 1764 |
| PdmI | GAANNNNTTC | 3 cut(s) | 697, 919, 1968 |
| PfeI | GAWTC | 9 cut(s) | 94, 440, 698, 950, 1385, 1598, 1646, 2003, 2455 |
| PfoI | TCCNGGA | 1 cut(s) | 300 |
| PleI | GAGTC | 3 cut(s) | 635, 1944, 2163 |
| PluTI | GGCGCC | 1 cut(s) | 343 |
| PpsI | GAGTC | 3 cut(s) | 635, 1944, 2163 |
| PshBI | ATTAAT | 1 cut(s) | 219 |
| Psp124BI | GAGCTC | 1 cut(s) | 1038 |
| Psp6I | CCWGG | 5 cut(s) | 300, 1422, 1432, 1508, 1663 |
| PspGI | CCWGG | 5 cut(s) | 300, 1422, 1432, 1508, 1663 |
| PspN4I | GGNNCC | 5 cut(s) | 200, 341, 1108, 1539, 1584 |
| PspPI | GGNCC | 4 cut(s) | 542, 1512, 2299, 2360 |
| PstI | CTGCAG | 2 cut(s) | 982, 1877 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1481, 2129 |
| PsuI | RGATCY | 3 cut(s) | 592, 901, 1537 |
| PvuII | CAGCTG | 1 cut(s) | 471 |
| RsaI | GTAC | 2 cut(s) | 2271, 2389 |
| RsaNI | GTAC | 2 cut(s) | 2270, 2388 |
| RseI | CAYNNNNRTG | 2 cut(s) | 674, 1349 |
| SacI | GAGCTC | 1 cut(s) | 1038 |
| SapI | GCTCTTC | 1 cut(s) | 1764 |
| SaqAI | TTAA | 9 cut(s) | 219, 314, 597, 773, 1283, 1340, 1776, 1821, 2542 |
| Sau3AI | GATC | 7 cut(s) | 142, 592, 901, 1274, 1537, 2029, 2503 |
| Sau96I | GGNCC | 4 cut(s) | 542, 1512, 2299, 2360 |
| SchI | GAGTC | 3 cut(s) | 636, 1945, 2164 |
| ScrFI | CCNGG | 5 cut(s) | 302, 1424, 1434, 1510, 1665 |
| SduI | GDGCHC | 5 cut(s) | 21, 1038, 1196, 2338, 2537 |
| SexAI | ACCWGGT | 1 cut(s) | 1432 |
| SfaNI | GCATC | 3 cut(s) | 363, 483, 1166 |
| SfcI | CTRYAG | 5 cut(s) | 897, 978, 1873, 2169, 2194 |
| SfoI | GGCGCC | 1 cut(s) | 341 |
| Sfr274I | CTCGAG | 1 cut(s) | 792 |
| SinI | GGWCC | 2 cut(s) | 1512, 2360 |
| SlaI | CTCGAG | 1 cut(s) | 792 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 674, 1349 |
| SmlI | CTYRAG | 3 cut(s) | 281, 792, 1752 |
| SmoI | CTYRAG | 3 cut(s) | 281, 792, 1752 |
| SseBI | AGGCCT | 1 cut(s) | 1022 |
| SsiI | CCGC | 8 cut(s) | 736, 826, 1333, 1458, 1580, 1772, 1903, 2210 |
| SspDI | GGCGCC | 1 cut(s) | 339 |
| SspMI | CTAG | 7 cut(s) | 126, 456, 854, 1407, 1428, 1500, 1679 |
| SstI | GAGCTC | 1 cut(s) | 1038 |
| StuI | AGGCCT | 1 cut(s) | 1022 |
| StyD4I | CCNGG | 5 cut(s) | 300, 1422, 1432, 1508, 1663 |
| StyI | CCWWGG | 2 cut(s) | 1014, 1406 |
| TaaI | ACNGT | 8 cut(s) | 500, 684, 1164, 1255, 2010, 2131, 2317, 2408 |
| TaiI | ACGT | 1 cut(s) | 1452 |
| TaqI | TCGA | 3 cut(s) | 793, 991, 2511 |
| TatI | WGTACW | 2 cut(s) | 2269, 2387 |
| TauI | GCSGC | 1 cut(s) | 829 |
| TfiI | GAWTC | 9 cut(s) | 94, 440, 698, 950, 1385, 1598, 1646, 2003, 2455 |
| Tru1I | TTAA | 9 cut(s) | 219, 314, 597, 773, 1283, 1340, 1776, 1821, 2542 |
| Tru9I | TTAA | 9 cut(s) | 219, 314, 597, 773, 1283, 1340, 1776, 1821, 2542 |
| TseFI | GTSAC | 5 cut(s) | 464, 523, 1868, 2198, 2402 |
| TseI | GCWGC | 9 cut(s) | 211, 761, 829, 977, 1118, 1128, 1660, 1832, 2123 |
| Tsp45I | GTSAC | 5 cut(s) | 464, 523, 1868, 2198, 2402 |
| TspDTI | ATGAA | 7 cut(s) | 168, 258, 453, 1856, 1977, 2006, 2130 |
| TspGWI | ACGGA | 2 cut(s) | 2370, 2452 |
| VpaK11BI | GGWCC | 2 cut(s) | 1512, 2360 |
| VspI | ATTAAT | 1 cut(s) | 219 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 1183, 1269, 2075 |
| XapI | RAATTY | 4 cut(s) | 28, 769, 844, 2470 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 47, 1430, 2023 |
| XhoI | CTCGAG | 1 cut(s) | 792 |
| XmaJI | CCTAGG | 1 cut(s) | 1406 |
| XmnI | GAANNNNTTC | 3 cut(s) | 697, 919, 1968 |
| XspI | CTAG | 7 cut(s) | 126, 456, 854, 1407, 1428, 1500, 1679 |