MD03G1112300.v1.1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0019766
Physical Location & Seq
Reverse (-)
9766021 .. 9766593
573 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1112300.v1.1.491

Sequence Viewer

Length: 414 bp
ATGCAAAATCCGGAATCAATGCCAGTATTGCTTTCAAATACCTTTCCAGAAATTATTTGTTCTCATTTCCCGAGCGTGCTCTGGCTGGAATTTCCAGAGTCAAGTATCTCTCTCTTTCGGCATATTCTTTGGAGCAGCTCACAAAGTGAATATTCAGAGGTATGGGAGTCGCCAAAGTTTCTGCCTAATTGTTTATCTTCGCATCTCAAGACTATCTCCATTACGGGATTCAAGGGAAGGCCGATTGAGAGGGAAGCGGCTAAGTACTTGTTGAGGAATGGTCATCTTTTAAATAAGATGACAATTTACACACATAGACGCCTTTTCTGCAAGAAAGAGGAATTATTGAAGGAGTTTTTGAAGTTTCATAGGGCAATGACTTGTCAAGTTGAGTTTATTGAGATGAAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

138

Amino Acids

16.17

Weight (kDa)

8.72

Isoelectric Point (pI)

70.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 58 - 102 4.3e-15 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019766)

Species Orthologous Gene IDs
malus_domestica MD03G1112300.v1.1 MD03G1253800.v1.1
rosa_chinensis RchiOBHm_Chr1g0382511
rosa_samantha Rh1AG460100 Rh1BG416300 Rh1CG430100 Rh1DG448700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 10
AciI CCGC 1 cut(s) 257
AcsI RAATTY 1 cut(s) 89
AcyI GRCGYC 1 cut(s) 319
AdeI CACNNNGTG 1 cut(s) 146
AfaI GTAC 1 cut(s) 266
AgsI TTSAA 4 cut(s) 36, 232, 349, 361
AluBI AGCT 1 cut(s) 138
AluI AGCT 1 cut(s) 138
Alw21I GWGCWC 1 cut(s) 81
Ama87I CYCGRG 1 cut(s) 70
Aor13HI TCCGGA 1 cut(s) 10
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 135
ApoI RAATTY 1 cut(s) 89
AvaI CYCGRG 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 147
BisI GCNGC 2 cut(s) 136, 258
BlsI GCNGC 2 cut(s) 137, 259
BmcAI AGTACT 1 cut(s) 266
BmeT110I CYCGRG 1 cut(s) 70
BmsI GCATC 1 cut(s) 211
BpuEI CTTGAG 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 319
BsaWI WCCGGW 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 23
Bse3DI GCAATG 1 cut(s) 381
BseAI TCCGGA 1 cut(s) 10
BseMI GCAATG 1 cut(s) 381
BseNI ACTGG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 147
BshFI GGCC 1 cut(s) 241
BsiHKAI GWGCWC 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 70
BsiSI CCGG 1 cut(s) 11
BsnI GGCC 1 cut(s) 241
BsoBI CYCGRG 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 81
Bsp13I TCCGGA 1 cut(s) 10
BspACI CCGC 1 cut(s) 257
BspANI GGCC 1 cut(s) 241
BspEI TCCGGA 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 381
BsrI ACTGG 1 cut(s) 23
BssNI GRCGYC 1 cut(s) 319
BstACI GRCGYC 1 cut(s) 319
BstC8I GCNNGC 1 cut(s) 77
BstDEI CTNAG 1 cut(s) 261
BstMWI GCNNNNNNNGC 2 cut(s) 28, 327
BstV1I GCAGC 1 cut(s) 147
BsuRI GGCC 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 77
CseI GACGC 1 cut(s) 327
Csp6I GTAC 1 cut(s) 265
CviJI RGCY 4 cut(s) 85, 138, 241, 260
CviKI_1 RGCY 4 cut(s) 85, 138, 241, 260
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 1 cut(s) 261
DraI TTTAAA 1 cut(s) 291
DraIII CACNNNGTG 1 cut(s) 146
Eco88I CYCGRG 1 cut(s) 70
FaiI YATR 4 cut(s) 123, 163, 315, 369
Fnu4HI GCNGC 2 cut(s) 136, 258
Fsp4HI GCNGC 2 cut(s) 136, 258
GluI GCNGC 2 cut(s) 136, 258
HaeIII GGCC 1 cut(s) 241
HapII CCGG 1 cut(s) 11
HgaI GACGC 1 cut(s) 327
Hin1I GRCGYC 1 cut(s) 319
HinfI GANTC 4 cut(s) 14, 98, 167, 228
HpaII CCGG 1 cut(s) 11
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 5 cut(s) 11, 47, 70, 95, 208
HpyAV CCTTC 2 cut(s) 231, 343
HpyCH4V TGCA 2 cut(s) 4, 330
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 327
HpyF3I CTNAG 1 cut(s) 261
Hsp92I GRCGYC 1 cut(s) 319
Kpn2I TCCGGA 1 cut(s) 10
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 6 cut(s) 24, 36, 60, 67, 71, 108
Lsp1109I GCAGC 1 cut(s) 147
LweI GCATC 1 cut(s) 211
MboII GAAGA 1 cut(s) 189
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 5 cut(s) 51, 89, 187, 303, 341
MlyI GAGTC 2 cut(s) 107, 176
MnlI CCTC 4 cut(s) 151, 243, 267, 331
MroI TCCGGA 1 cut(s) 10
MseI TTAA 1 cut(s) 290
MspI CCGG 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 28, 327
PfeI GAWTC 2 cut(s) 14, 228
PkrI GCNGC 2 cut(s) 137, 259
PleI GAGTC 2 cut(s) 106, 175
PpsI GAGTC 2 cut(s) 106, 175
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
SaqAI TTAA 1 cut(s) 290
SatI GCNGC 2 cut(s) 136, 258
ScaI AGTACT 1 cut(s) 266
SchI GAGTC 2 cut(s) 107, 176
SduI GDGCHC 1 cut(s) 81
SetI ASST 3 cut(s) 44, 140, 162
SfaNI GCATC 1 cut(s) 211
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 5 cut(s) 51, 89, 187, 303, 341
SsiI CCGC 1 cut(s) 257
SspI AATATT 1 cut(s) 152
TasI AATT 5 cut(s) 51, 89, 187, 303, 341
TatI WGTACW 1 cut(s) 264
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 2 cut(s) 14, 228
Tru1I TTAA 1 cut(s) 290
Tru9I TTAA 1 cut(s) 290
TseI GCWGC 1 cut(s) 135
TspDTI ATGAA 1 cut(s) 356
XapI RAATTY 1 cut(s) 89
ZrmI AGTACT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.