Rh1DG448700

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0019766
Physical Location & Seq
Reverse (-)
65754783 .. 65755350
568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG448700.1

Sequence Viewer

Length: 345 bp
ATGGACTTGTACTTGATCTTGCAATTCGGCTTCTGGCTCAAATTTCTGAGGTTAAGTATGTCTCTCTCTCGGCTTATGTTTTGGAGCAGCATTGCTCCTAATCTGGAAGACATTGTCCTAGAAGACAGAACTAAAGATGACAGAGAATATTCAGAGCTTCATTGGAATCCACCAGAGGTTGTGCCTAGTTGTTTGTTGTCACACCTCAAGACTATCTCCATTCATGGATTCAAGGGACAGAGGATTGAGATAGAAGTGACAAAGTATTTGCTGTTCAATGGTTATCTCTTGAATAAGTTGACAATCACGTATAGTATAGATCTTTCGGGTGAGGAAAATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

114

Amino Acids

13.41

Weight (kDa)

5.28

Isoelectric Point (pI)

46.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 58 - 102 2.9e-14 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019766)

Species Orthologous Gene IDs
malus_domestica MD03G1112300.v1.1 MD03G1253800.v1.1
rosa_chinensis RchiOBHm_Chr1g0382511
rosa_samantha Rh1AG460100 Rh1BG416300 Rh1CG430100 Rh1DG448700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 41
AfaI GTAC 1 cut(s) 11
AgsI TTSAA 3 cut(s) 232, 277, 292
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
Alw26I GTCTC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 87
ApoI RAATTY 1 cut(s) 41
ArsI GACNNNNNNTTYG 2 cut(s) 250, 282
AsuHPI GGTGA 1 cut(s) 341
BbsI GAAGAC 2 cut(s) 114, 129
BbvI GCAGC 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 2 cut(s) 119, 186
BglII AGATCT 1 cut(s) 319
BisI GCNGC 1 cut(s) 88
BlsI GCNGC 1 cut(s) 89
BpiI GAAGAC 2 cut(s) 114, 129
BpuEI CTTGAG 1 cut(s) 191
BsaAI YACGTR 1 cut(s) 309
Bse3DI GCAATG 1 cut(s) 90
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 99
BslFI GGGAC 1 cut(s) 249
BsmAI GTCTC 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 249
Bsp143I GATC 2 cut(s) 15, 319
BspCNI CTCAG 1 cut(s) 39
BsrDI GCAATG 1 cut(s) 90
BssMI GATC 2 cut(s) 15, 319
BstBAI YACGTR 1 cut(s) 309
BstDEI CTNAG 1 cut(s) 47
BstKTI GATC 2 cut(s) 18, 322
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 2 cut(s) 15, 319
BstV1I GCAGC 1 cut(s) 99
BstV2I GAAGAC 2 cut(s) 114, 129
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
Csp6I GTAC 1 cut(s) 10
CviAII CATG 1 cut(s) 224
CviJI RGCY 4 cut(s) 30, 37, 73, 157
CviKI_1 RGCY 4 cut(s) 30, 37, 73, 157
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 1 cut(s) 47
DpnI GATC 2 cut(s) 17, 321
DpnII GATC 2 cut(s) 15, 319
FaeI CATG 1 cut(s) 227
FaiI YATR 5 cut(s) 59, 77, 225, 312, 317
FaqI GGGAC 1 cut(s) 249
FatI CATG 1 cut(s) 223
Fnu4HI GCNGC 1 cut(s) 88
Fsp4HI GCNGC 1 cut(s) 88
FspBI CTAG 2 cut(s) 119, 186
GluI GCNGC 1 cut(s) 88
Hin1II CATG 1 cut(s) 227
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HinfI GANTC 2 cut(s) 166, 228
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 1 cut(s) 300
Hpy188I TCNGA 2 cut(s) 48, 154
Hpy188III TCNNGA 3 cut(s) 104, 208, 289
Hpy8I GTNNAC 1 cut(s) 300
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 1 cut(s) 22
HpyF3I CTNAG 1 cut(s) 47
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 1 cut(s) 227
Kzo9I GATC 2 cut(s) 15, 319
LmnI GCTCC 2 cut(s) 84, 100
LpnPI CCDG 3 cut(s) 19, 89, 186
Lsp1109I GCAGC 1 cut(s) 99
MaeI CTAG 2 cut(s) 119, 186
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 2 cut(s) 198, 256
MalI GATC 2 cut(s) 17, 321
MboI GATC 2 cut(s) 15, 319
MboII GAAGA 2 cut(s) 119, 134
MflI RGATCY 1 cut(s) 319
MluCI AATT 3 cut(s) 23, 41, 340
MnlI CCTC 5 cut(s) 42, 169, 215, 234, 325
MseI TTAA 1 cut(s) 53
NdeII GATC 2 cut(s) 15, 319
NlaIII CATG 1 cut(s) 227
NmeAIII GCCGAG 1 cut(s) 49
NmuCI GTSAC 2 cut(s) 198, 256
PfeI GAWTC 2 cut(s) 166, 228
PflFI GACNNNGTC 1 cut(s) 113
PkrI GCNGC 1 cut(s) 89
Ppu21I YACGTR 1 cut(s) 309
PsrI GAACNNNNNNTAC 2 cut(s) 257, 289
PsuI RGATCY 1 cut(s) 319
PsyI GACNNNGTC 1 cut(s) 113
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 1 cut(s) 88
Sau3AI GATC 2 cut(s) 15, 319
SetI ASST 5 cut(s) 53, 159, 180, 207, 311
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 3 cut(s) 23, 41, 340
SspI AATATT 1 cut(s) 149
SspMI CTAG 2 cut(s) 119, 186
TaiI ACGT 1 cut(s) 311
TasI AATT 3 cut(s) 23, 41, 340
TatI WGTACW 1 cut(s) 9
TfiI GAWTC 2 cut(s) 166, 228
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TseFI GTSAC 2 cut(s) 198, 256
TseI GCWGC 1 cut(s) 87
Tsp45I GTSAC 2 cut(s) 198, 256
TspDTI ATGAA 2 cut(s) 149, 212
Tth111I GACNNNGTC 1 cut(s) 113
XapI RAATTY 1 cut(s) 41
XspI CTAG 2 cut(s) 119, 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.