RchiOBHm_Chr1g0382511

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0019766
Physical Location & Seq
Reverse (-)
67350358 .. 67350936
579 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60548

Sequence Viewer

Length: 318 bp
ATGGACTTGTACTTGATCTTGCAATTCGGCTTCTGGCTCAAATTTCTGAGGTTAAGTATGTCTCTCTCTCTCGGCTTATGTTTTGGAGACAGAACTAAAGATGACAGAGAATATTCAGAGCTTCATTGGAATCCACCAGAGGTTGTGCGGCTTGTGCCTAGTTGTTTGTTGTCACACCTCAAGACTATCTCCATTCATGGATTCAAGGGACAGAGGATTGAGATAGAAGTGACAAAGTATTTGCTGTTCAATGGTTATCTCTTGAATAAGTTGACAATCACGTATAGTATAGATCTTTCGGATGAGGAACATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

105

Amino Acids

12.34

Weight (kDa)

6.04

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 52 - 93 8e-14 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019766)

Species Orthologous Gene IDs
malus_domestica MD03G1112300.v1.1 MD03G1253800.v1.1
rosa_chinensis RchiOBHm_Chr1g0382511
rosa_samantha Rh1AG460100 Rh1BG416300 Rh1CG430100 Rh1DG448700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 148
AcsI RAATTY 1 cut(s) 41
AfaI GTAC 1 cut(s) 11
AgsI TTSAA 3 cut(s) 205, 250, 265
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
Alw26I GTCTC 2 cut(s) 66, 81
ApoI RAATTY 1 cut(s) 41
ArsI GACNNNNNNTTYG 2 cut(s) 223, 255
BcoDI GTCTC 2 cut(s) 66, 81
BfaI CTAG 1 cut(s) 159
BglII AGATCT 1 cut(s) 292
BisI GCNGC 1 cut(s) 149
BlsI GCNGC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 164
BsaAI YACGTR 1 cut(s) 282
BseGI GGATG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 38
BslFI GGGAC 1 cut(s) 222
BsmAI GTCTC 2 cut(s) 66, 81
BsmFI GGGAC 1 cut(s) 222
Bsp143I GATC 2 cut(s) 15, 292
BspACI CCGC 1 cut(s) 148
BspCNI CTCAG 1 cut(s) 39
BssMI GATC 2 cut(s) 15, 292
BstBAI YACGTR 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 47
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 2 cut(s) 18, 295
BstMAI GTCTC 2 cut(s) 66, 81
BstMBI GATC 2 cut(s) 15, 292
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
BtsCI GGATG 1 cut(s) 307
Csp6I GTAC 1 cut(s) 10
CviAII CATG 1 cut(s) 197
CviJI RGCY 5 cut(s) 30, 37, 75, 121, 151
CviKI_1 RGCY 5 cut(s) 30, 37, 75, 121, 151
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 1 cut(s) 47
DpnI GATC 2 cut(s) 17, 294
DpnII GATC 2 cut(s) 15, 292
FaeI CATG 1 cut(s) 200
FaiI YATR 6 cut(s) 59, 79, 198, 285, 290, 312
FaqI GGGAC 1 cut(s) 222
FatI CATG 1 cut(s) 196
Fnu4HI GCNGC 1 cut(s) 149
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 1 cut(s) 149
FspBI CTAG 1 cut(s) 159
GluI GCNGC 1 cut(s) 149
Hin1II CATG 1 cut(s) 200
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HinfI GANTC 2 cut(s) 130, 201
Hpy166II GTNNAC 1 cut(s) 273
Hpy188I TCNGA 3 cut(s) 48, 118, 301
Hpy188III TCNNGA 2 cut(s) 181, 262
Hpy8I GTNNAC 1 cut(s) 273
HpyCH4IV ACGT 1 cut(s) 281
HpyCH4V TGCA 1 cut(s) 22
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpyF3I CTNAG 1 cut(s) 47
HpySE526I ACGT 1 cut(s) 281
Hsp92II CATG 1 cut(s) 200
Kzo9I GATC 2 cut(s) 15, 292
LpnPI CCDG 2 cut(s) 19, 150
MaeI CTAG 1 cut(s) 159
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 2 cut(s) 171, 229
MalI GATC 2 cut(s) 17, 294
MboI GATC 2 cut(s) 15, 292
MflI RGATCY 1 cut(s) 292
MluCI AATT 3 cut(s) 23, 41, 313
MnlI CCTC 5 cut(s) 42, 133, 188, 207, 298
MseI TTAA 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 154
NdeII GATC 2 cut(s) 15, 292
NlaIII CATG 1 cut(s) 200
NmeAIII GCCGAG 1 cut(s) 51
NmuCI GTSAC 2 cut(s) 171, 229
PfeI GAWTC 2 cut(s) 130, 201
PkrI GCNGC 1 cut(s) 150
Ppu21I YACGTR 1 cut(s) 282
PsrI GAACNNNNNNTAC 2 cut(s) 230, 262
PsuI RGATCY 1 cut(s) 292
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 1 cut(s) 149
Sau3AI GATC 2 cut(s) 15, 292
SetI ASST 5 cut(s) 53, 123, 144, 180, 284
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 3 cut(s) 23, 41, 313
SsiI CCGC 1 cut(s) 148
SspI AATATT 1 cut(s) 113
SspMI CTAG 1 cut(s) 159
TaiI ACGT 1 cut(s) 284
TasI AATT 3 cut(s) 23, 41, 313
TatI WGTACW 1 cut(s) 9
TauI GCSGC 1 cut(s) 151
TfiI GAWTC 2 cut(s) 130, 201
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TseFI GTSAC 2 cut(s) 171, 229
Tsp45I GTSAC 2 cut(s) 171, 229
TspDTI ATGAA 2 cut(s) 113, 185
XapI RAATTY 1 cut(s) 41
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.