Rh1CG430100

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0019766
Physical Location & Seq
Reverse (-)
68755674 .. 68756422
749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG430100.1

Sequence Viewer

Length: 507 bp
ATGTTCAATTTGCATATTGATCCACCAAAGCTTGAAAACCTTCATATTGAAAAGCCTTTTCTGCCGGGTTTGTTTTTGGAGAATGCAAAACCATACCTTGCCATATTTTTGTACCAGACCTGGGAGTGTTTGAAGGACATATTGCTCAGTTTACCAAACATGGATTTGGACTTAATCTTGCAATTCGGCTTATGGCTCAAATTTCTTAGCTGGTTCTCCTTGATAGCACTATTACTGGGAATTGATAGCAGCAGTGCTCCTAATCTGGAAGATATTGTCTTAGAAGATGAAACTAAAGATGACAGAGAATATTCAGAGCTTCATTGGAATCCACCAGAGGTTGTGCCTGGTTGTTTGTTGTCACACCTCAAGACTATCTCCATTCATGGATTCAAGGGACAGAGGATTGAGATAGAAGTGACAAAGTATTTGCTGTTCAATGGTTATCTCTTGGATAAGTTGACAATCACGTATAGTATAGATCTTTCGGATGAGGAAAATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

168

Amino Acids

19.48

Weight (kDa)

4.55

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 112 - 156 1.2e-13 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019766)

Species Orthologous Gene IDs
malus_domestica MD03G1112300.v1.1 MD03G1253800.v1.1
rosa_chinensis RchiOBHm_Chr1g0382511
rosa_samantha Rh1AG460100 Rh1BG416300 Rh1CG430100 Rh1DG448700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 14
AcsI RAATTY 1 cut(s) 200
AfaI GTAC 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 121
AgsI TTSAA 6 cut(s) 7, 35, 50, 133, 394, 439
AjnI CCWGG 2 cut(s) 119, 346
AluBI AGCT 3 cut(s) 31, 210, 319
AluI AGCT 3 cut(s) 31, 210, 319
Alw21I GWGCWC 1 cut(s) 259
AlwI GGATC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 249
ApoI RAATTY 1 cut(s) 200
ArsI GACNNNNNNTTYG 2 cut(s) 412, 444
Asp700I GAANNNNTTC 1 cut(s) 39
AsuC2I CCSGG 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 1 cut(s) 261
BciT130I CCWGG 2 cut(s) 121, 348
BcnI CCSGG 1 cut(s) 66
BglII AGATCT 1 cut(s) 481
BisI GCNGC 1 cut(s) 250
BlsI GCNGC 1 cut(s) 251
Bme1390I CCNGG 3 cut(s) 66, 121, 348
BmrFI CCNGG 3 cut(s) 66, 121, 348
BmrI ACTGGG 1 cut(s) 245
BmuI ACTGGG 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 353
BpuMI CCSGG 1 cut(s) 66
BsaAI YACGTR 1 cut(s) 471
BsaJI CCNNGG 1 cut(s) 120
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 240
BseBI CCWGG 2 cut(s) 121, 348
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 1 cut(s) 496
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 160
BseNI ACTGG 1 cut(s) 240
BseXI GCAGC 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 259
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 411
BslI CCNNNNNNNGG 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 411
BsmI GAATGC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 2 cut(s) 19, 481
BspCNI CTCAG 1 cut(s) 159
BspPI GGATC 1 cut(s) 14
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 2 cut(s) 19, 481
Bst2UI CCWGG 2 cut(s) 121, 348
BstBAI YACGTR 1 cut(s) 471
BstDEI CTNAG 3 cut(s) 146, 206, 280
BstF5I GGATG 1 cut(s) 496
BstKTI GATC 2 cut(s) 22, 484
BstMBI GATC 2 cut(s) 19, 481
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstNI CCWGG 2 cut(s) 121, 348
BstSCI CCNGG 3 cut(s) 64, 119, 346
BstV1I GCAGC 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 481
BstYI RGATCY 1 cut(s) 481
BtsCI GGATG 1 cut(s) 496
BtsI GCAGTG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 259
Csp6I GTAC 1 cut(s) 112
CviAII CATG 2 cut(s) 160, 386
CviJI RGCY 6 cut(s) 31, 55, 189, 196, 210, 319
CviKI_1 RGCY 6 cut(s) 31, 55, 189, 196, 210, 319
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 3 cut(s) 146, 206, 280
DpnI GATC 2 cut(s) 21, 483
DpnII GATC 2 cut(s) 19, 481
EcoRII CCWGG 2 cut(s) 119, 346
FaeI CATG 2 cut(s) 163, 389
FaqI GGGAC 1 cut(s) 411
FatI CATG 2 cut(s) 159, 385
Fnu4HI GCNGC 1 cut(s) 250
FokI GGATG 1 cut(s) 503
Fsp4HI GCNGC 1 cut(s) 250
GluI GCNGC 1 cut(s) 250
HapII CCGG 1 cut(s) 65
Hin1II CATG 2 cut(s) 163, 389
HincII GTYRAC 1 cut(s) 462
HindII GTYRAC 1 cut(s) 462
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 2 cut(s) 328, 390
HpaII CCGG 1 cut(s) 65
Hpy166II GTNNAC 2 cut(s) 152, 462
Hpy188I TCNGA 2 cut(s) 316, 490
Hpy188III TCNNGA 2 cut(s) 266, 370
Hpy8I GTNNAC 2 cut(s) 152, 462
HpyAV CCTTC 2 cut(s) 50, 127
HpyCH4IV ACGT 1 cut(s) 470
HpyCH4V TGCA 3 cut(s) 13, 86, 181
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
HpyF3I CTNAG 3 cut(s) 146, 206, 280
HpySE526I ACGT 1 cut(s) 470
Hsp92II CATG 2 cut(s) 163, 389
Kzo9I GATC 2 cut(s) 19, 481
LmnI GCTCC 1 cut(s) 262
Lsp1109I GCAGC 1 cut(s) 261
MaeII ACGT 1 cut(s) 470
MaeIII GTNAC 2 cut(s) 360, 418
MalI GATC 2 cut(s) 21, 483
MboI GATC 2 cut(s) 19, 481
MboII GAAGA 2 cut(s) 281, 296
MflI RGATCY 1 cut(s) 481
MhlI GDGCHC 1 cut(s) 259
MluCI AATT 4 cut(s) 7, 182, 200, 240
MnlI CCTC 4 cut(s) 331, 377, 396, 487
MroXI GAANNNNTTC 1 cut(s) 39
MseI TTAA 1 cut(s) 173
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 3 cut(s) 66, 121, 348
Mva1269I GAATGC 1 cut(s) 88
MvaI CCWGG 2 cut(s) 121, 348
MwoI GCNNNNNNNGC 1 cut(s) 61
NciI CCSGG 1 cut(s) 66
NdeII GATC 2 cut(s) 19, 481
NlaIII CATG 2 cut(s) 163, 389
NmuCI GTSAC 2 cut(s) 360, 418
PctI GAATGC 1 cut(s) 88
PdmI GAANNNNTTC 1 cut(s) 39
PfeI GAWTC 2 cut(s) 328, 390
PkrI GCNGC 1 cut(s) 251
Ppu21I YACGTR 1 cut(s) 471
Psp6I CCWGG 2 cut(s) 119, 346
PspGI CCWGG 2 cut(s) 119, 346
PsrI GAACNNNNNNTAC 2 cut(s) 419, 451
PsuI RGATCY 1 cut(s) 481
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SaqAI TTAA 1 cut(s) 173
SatI GCNGC 1 cut(s) 250
Sau3AI GATC 2 cut(s) 19, 481
ScrFI CCNGG 3 cut(s) 66, 121, 348
SduI GDGCHC 1 cut(s) 259
SetI ASST 9 cut(s) 33, 42, 99, 122, 212, 321, 342, 369, 473
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 4 cut(s) 7, 182, 200, 240
SspI AATATT 1 cut(s) 311
StyD4I CCNGG 3 cut(s) 64, 119, 346
TaiI ACGT 1 cut(s) 473
TasI AATT 4 cut(s) 7, 182, 200, 240
TfiI GAWTC 2 cut(s) 328, 390
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 2 cut(s) 360, 418
TseI GCWGC 1 cut(s) 249
Tsp45I GTSAC 2 cut(s) 360, 418
TspDTI ATGAA 4 cut(s) 32, 303, 311, 374
TspRI CASTG 1 cut(s) 259
XapI RAATTY 1 cut(s) 200
XmnI GAANNNNTTC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.