Rh1AG460100

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0019766
Physical Location & Seq
Reverse (-)
67781738 .. 67782329
592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG460100.1

Sequence Viewer

Length: 306 bp
ATGGATTTGGATTTAATCTTGCAATTCGGCTTCTGGCTCAAATTTCTTAGCAGTGCTCCTAATCTGGAAGATATTGTCTTAGAAGATGAAACTAAAGATGACAGAGAATATTCAGAGCTTCATTGGAATCCACCAGAGGTTGTGCCTGGTCGTTTGTTGTCACACCTCAAGACTATCTCCATTCATGGATTCAAGGGACAGAGGATTGAGATAGAAGTGACAAAGTATTTGCTGTTCAATGGTTATCTCTTGAATAAGTTGACAATCACGTATAGTATAGATCTTTCGGATGAGGAAAATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

101

Amino Acids

11.81

Weight (kDa)

4.58

Isoelectric Point (pI)

38.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 45 - 89 4.8e-12 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019766)

Species Orthologous Gene IDs
malus_domestica MD03G1112300.v1.1 MD03G1253800.v1.1
rosa_chinensis RchiOBHm_Chr1g0382511
rosa_samantha Rh1AG460100 Rh1BG416300 Rh1CG430100 Rh1DG448700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 41
AgsI TTSAA 3 cut(s) 193, 238, 253
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw21I GWGCWC 1 cut(s) 58
ApoI RAATTY 1 cut(s) 41
ArsI GACNNNNNNTTYG 2 cut(s) 211, 243
Bbv12I GWGCWC 1 cut(s) 58
BciT130I CCWGG 1 cut(s) 147
BglII AGATCT 1 cut(s) 280
Bme1390I CCNGG 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 152
BsaAI YACGTR 1 cut(s) 270
BseBI CCWGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 58
BslFI GGGAC 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 58
Bsp143I GATC 1 cut(s) 280
BssMI GATC 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 147
BstBAI YACGTR 1 cut(s) 270
BstDEI CTNAG 2 cut(s) 47, 79
BstF5I GGATG 1 cut(s) 295
BstKTI GATC 1 cut(s) 283
BstMBI GATC 1 cut(s) 280
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 145
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BtsCI GGATG 1 cut(s) 295
BtsI GCAGTG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 58
CviAII CATG 1 cut(s) 185
CviJI RGCY 3 cut(s) 30, 37, 118
CviKI_1 RGCY 3 cut(s) 30, 37, 118
DdeI CTNAG 2 cut(s) 47, 79
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 145
FaeI CATG 1 cut(s) 188
FaiI YATR 3 cut(s) 186, 273, 278
FaqI GGGAC 1 cut(s) 210
FatI CATG 1 cut(s) 184
FokI GGATG 1 cut(s) 302
Hin1II CATG 1 cut(s) 188
HincII GTYRAC 1 cut(s) 261
HindII GTYRAC 1 cut(s) 261
HinfI GANTC 2 cut(s) 127, 189
Hpy166II GTNNAC 1 cut(s) 261
Hpy188I TCNGA 2 cut(s) 115, 289
Hpy188III TCNNGA 3 cut(s) 65, 169, 250
Hpy8I GTNNAC 1 cut(s) 261
HpyCH4IV ACGT 1 cut(s) 269
HpyCH4V TGCA 1 cut(s) 22
HpyF3I CTNAG 2 cut(s) 47, 79
HpySE526I ACGT 1 cut(s) 269
Hsp92II CATG 1 cut(s) 188
Kzo9I GATC 1 cut(s) 280
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 5 cut(s) 19, 50, 132, 147, 159
MaeII ACGT 1 cut(s) 269
MaeIII GTNAC 2 cut(s) 159, 217
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 2 cut(s) 80, 95
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 58
MluCI AATT 2 cut(s) 23, 41
MnlI CCTC 4 cut(s) 130, 176, 195, 286
MseI TTAA 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 147
NdeII GATC 1 cut(s) 280
NlaIII CATG 1 cut(s) 188
NmuCI GTSAC 2 cut(s) 159, 217
PfeI GAWTC 2 cut(s) 127, 189
Ppu21I YACGTR 1 cut(s) 270
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PsrI GAACNNNNNNTAC 2 cut(s) 218, 250
PsuI RGATCY 1 cut(s) 280
SaqAI TTAA 1 cut(s) 14
Sau3AI GATC 1 cut(s) 280
ScrFI CCNGG 1 cut(s) 147
SduI GDGCHC 1 cut(s) 58
SetI ASST 4 cut(s) 120, 141, 168, 272
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 2 cut(s) 23, 41
SspI AATATT 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 145
TaiI ACGT 1 cut(s) 272
TasI AATT 2 cut(s) 23, 41
TfiI GAWTC 2 cut(s) 127, 189
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 2 cut(s) 159, 217
Tsp45I GTSAC 2 cut(s) 159, 217
TspDTI ATGAA 3 cut(s) 102, 110, 173
TspRI CASTG 1 cut(s) 58
XapI RAATTY 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.