Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0012933

Physical Location & Seq

Genomic Coordinates Reverse (-)

9890124 .. 9890975

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1112500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTTGTCCGTCCCTTCTACACCGTCAGACTCCTGTCTGCATCTAGATAGATCACCAACCCCCCCTTTTGCATTTATATTTGCCCAAAATTCACAAAAAATACATACAATAATTTCTCAAAAGTTCTCCTTTTATTTTCTCCTCCAGAAAAAACCCAAAAATATAGAAAGAGAGAGAAAAATGCAGTCCATGTTAACCCTCCATGGAAGCTTTGGCCTTCCTCTCTGTGTTTCAGGGATATCCCATCACCATCTGACCTTTTCTAAGGAGATGGCAGATCATGATCGCAGAAGGGAAGCCATGAAAAGGAAGAGGTCACAAGCTAGGGCAGCTCTGCATGCAAATCAAGAAGTGGGTTTTGAAGGAACAAGTGAAAGAGTTGCAACAGAAGAGATCAAGGAAGACGATGGAGATCTAGCTAGTGCACTACATGATCTGTGTTGCAGTTATTTGGCTTGCACTGCAAAAGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.76

Weight (kDa)

8.63

Isoelectric Point (pI)

67.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60400 AT5G60400 AT5G60400
fragaria_vesca	FvH4_3g33040
malus_domestica	MD03G1112500.v1.1 MD11G1131400.v1.1
prunus_persica	Prupe.6G095800_v2.0.a1 Prupe.6G096000_v2.0.a1
pyrus_communis	pycom11g10860
rosa_chinensis	RchiOBHm_Chr5g0060411
rosa_multiflora	Rmu_sc0003270.1_g000013
rosa_roxburghii	Rroxscaffold_1G00020420
rosa_rugosa	Rorug05G0329700
rosa_samantha	Rh5AG394400 Rh5BG406600 Rh5CG430400 Rh5DG421700
rosa_wichuraiana	Rw5G037100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	88
AfiI	CCNNNNNNNGG	1 cut(s)	306
AgsI	TTSAA	1 cut(s)	362
AluBI	AGCT	5 cut(s)	210, 323, 332, 419, 470
AluI	AGCT	5 cut(s)	210, 323, 332, 419, 470
Alw21I	GWGCWC	1 cut(s)	427
Alw44I	GTGCAC	1 cut(s)	423
AoxI	GGCC	1 cut(s)	214
ApaLI	GTGCAC	1 cut(s)	423
ApeKI	GCWGC	2 cut(s)	329, 470
ApoI	RAATTY	1 cut(s)	88
AsuHPI	GGTGA	2 cut(s)	45, 239
BaeGI	GKGCMC	1 cut(s)	427
BbsI	GAAGAC	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	427
BbvI	GCAGC	2 cut(s)	341, 457
BccI	CCATC	4 cut(s)	252, 258, 265, 401
BfaI	CTAG	4 cut(s)	44, 324, 416, 420
BglII	AGATCT	1 cut(s)	412
BisI	GCNGC	2 cut(s)	330, 471
BlsI	GCNGC	2 cut(s)	331, 472
BmsI	GCATC	1 cut(s)	49
BoxI	GACNNNNGTC	1 cut(s)	33
BpiI	GAAGAC	1 cut(s)	408
BpmI	CTGGAG	1 cut(s)	128
BsaBI	GATNNNNATC	2 cut(s)	282, 411
BsaJI	CCNNGG	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse8I	GATNNNNATC	2 cut(s)	282, 411
BseDI	CCNNGG	1 cut(s)	202
BseJI	GATNNNNATC	2 cut(s)	282, 411
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseRI	GAGGAG	1 cut(s)	131
BseSI	GKGCMC	1 cut(s)	427
BseXI	GCAGC	2 cut(s)	341, 457
BshFI	GGCC	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	427
BslI	CCNNNNNNNGG	1 cut(s)	306
BsnI	GGCC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp143I	GATC	6 cut(s)	50, 277, 283, 393, 412, 433
Bsp19I	CCATGG	1 cut(s)	202
BspANI	GGCC	1 cut(s)	216
BspHI	TCATGA	1 cut(s)	280
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	6 cut(s)	50, 277, 283, 393, 412, 433
BssT1I	CCWWGG	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	24
Bst6I	CTCTTC	2 cut(s)	305, 384
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstC8I	GCNNGC	2 cut(s)	339, 457
BstDEI	CTNAG	1 cut(s)	264
BstDSI	CCRYGG	1 cut(s)	202
BstKTI	GATC	6 cut(s)	53, 280, 286, 396, 415, 436
BstMBI	GATC	6 cut(s)	50, 277, 283, 393, 412, 433
BstMWI	GCNNNNNNNGC	4 cut(s)	329, 338, 461, 470
BstNSI	RCATGY	1 cut(s)	341
BstPAI	GACNNNNGTC	1 cut(s)	33
BstSLI	GKGCMC	1 cut(s)	427
BstV1I	GCAGC	2 cut(s)	341, 457
BstV2I	GAAGAC	1 cut(s)	408
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BsuRI	GGCC	1 cut(s)	216
BtgI	CCRYGG	1 cut(s)	202
BtsI	GCAGTG	1 cut(s)	459
BtsIMutI	CAGTG	1 cut(s)	459
Cac8I	GCNNGC	2 cut(s)	339, 457
CciI	TCATGA	1 cut(s)	280
CviAII	CATG	6 cut(s)	190, 203, 281, 301, 338, 431
CviJI	RGCY	8 cut(s)	210, 216, 299, 323, 332, 419, 455, 470
CviKI_1	RGCY	8 cut(s)	210, 216, 299, 323, 332, 419, 455, 470
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	6 cut(s)	52, 279, 285, 395, 414, 435
DpnII	GATC	6 cut(s)	50, 277, 283, 393, 412, 433
Eam1104I	CTCTTC	2 cut(s)	305, 384
EarI	CTCTTC	2 cut(s)	305, 384
Eco130I	CCWWGG	1 cut(s)	202
Eco32I	GATATC	1 cut(s)	240
EcoRV	GATATC	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	6 cut(s)	193, 206, 284, 304, 341, 434
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FatI	CATG	6 cut(s)	189, 202, 280, 300, 337, 430
Fnu4HI	GCNGC	2 cut(s)	330, 471
Fsp4HI	GCNGC	2 cut(s)	330, 471
FspBI	CTAG	4 cut(s)	44, 324, 416, 420
GluI	GCNGC	2 cut(s)	330, 471
GsuI	CTGGAG	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	216
Hin1II	CATG	6 cut(s)	193, 206, 284, 304, 341, 434
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HindIII	AAGCTT	1 cut(s)	208
HinfI	GANTC	1 cut(s)	29
HpaI	GTTAAC	1 cut(s)	195
HphI	GGTGA	2 cut(s)	45, 239
Hpy166II	GTNNAC	2 cut(s)	195, 425
Hpy188I	TCNGA	2 cut(s)	28, 255
Hpy188III	TCNNGA	4 cut(s)	44, 145, 281, 347
Hpy8I	GTNNAC	2 cut(s)	195, 425
HpyAV	CCTTC	4 cut(s)	24, 227, 285, 356
HpyCH4III	ACNGT	1 cut(s)	24
HpyF10VI	GCNNNNNNNGC	4 cut(s)	329, 338, 461, 470
HpyF3I	CTNAG	1 cut(s)	264
Hsp92II	CATG	6 cut(s)	193, 206, 284, 304, 341, 434
KspAI	GTTAAC	1 cut(s)	195
Kzo9I	GATC	6 cut(s)	50, 277, 283, 393, 412, 433
LpnPI	CCDG	3 cut(s)	46, 158, 219
Lsp1109I	GCAGC	2 cut(s)	341, 457
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	4 cut(s)	44, 324, 416, 420
MaeIII	GTNAC	1 cut(s)	315
MalI	GATC	6 cut(s)	52, 279, 285, 395, 414, 435
MboI	GATC	6 cut(s)	50, 277, 283, 393, 412, 433
MboII	GAAGA	3 cut(s)	322, 401, 413
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	1 cut(s)	427
MluCI	AATT	2 cut(s)	88, 111
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	4 cut(s)	152, 209, 231, 306
MseI	TTAA	1 cut(s)	194
MwoI	GCNNNNNNNGC	4 cut(s)	329, 338, 461, 470
NcoI	CCATGG	1 cut(s)	202
NdeII	GATC	6 cut(s)	50, 277, 283, 393, 412, 433
NlaIII	CATG	6 cut(s)	193, 206, 284, 304, 341, 434
NmuCI	GTSAC	1 cut(s)	315
NspI	RCATGY	1 cut(s)	341
PaeI	GCATGC	1 cut(s)	341
PagI	TCATGA	1 cut(s)	280
PkrI	GCNGC	2 cut(s)	331, 472
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PshAI	GACNNNNGTC	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	412
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	2 cut(s)	330, 471
Sau3AI	GATC	6 cut(s)	50, 277, 283, 393, 412, 433
SchI	GAGTC	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	427
SetI	ASST	7 cut(s)	212, 260, 317, 325, 334, 421, 472
SfaNI	GCATC	1 cut(s)	49
SphI	GCATGC	1 cut(s)	341
Sse9I	AATT	2 cut(s)	88, 111
SspMI	CTAG	4 cut(s)	44, 324, 416, 420
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	1 cut(s)	24
TasI	AATT	2 cut(s)	88, 111
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	1 cut(s)	466
TseFI	GTSAC	1 cut(s)	315
TseI	GCWGC	2 cut(s)	329, 470
Tsp45I	GTSAC	1 cut(s)	315
TspDTI	ATGAA	1 cut(s)	317
TspRI	CASTG	1 cut(s)	466
VneI	GTGCAC	1 cut(s)	423
XapI	RAATTY	1 cut(s)	88
XbaI	TCTAGA	1 cut(s)	43
XceI	RCATGY	1 cut(s)	341
XcmI	CCANNNNNNNNNTGG	1 cut(s)	209
XspI	CTAG	4 cut(s)	44, 324, 416, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.