Rroxscaffold_1G00020420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012933
Physical Location & Seq
Reverse (-)
24707383 .. 24708092
710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00020420.1

Sequence Viewer

Length: 291 bp
ATGCAGTCCATGTTGAACCTCCATGGCACCTTTGGCCTTCCTCTATGCGTTTCAGGGATAACTCATCATCCTCCTCATCTCACCCACGAGATGGCGGATCATGATCGGAGAAGAGAGGCCATGAAAAAGCAGAGATCGAGAGCTAGAGAGGAGCTGAATGCGAATCAGGAAATGGGTATTGAGAGGATCAGAGAAAGAGTGGCAGAAGAGATCACGGATGGTGATCTAGCTGCTCTACTGCATGATCTGTCCCTTTGTTATTTGGCTAATTGTATTGCTAAAGCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.86

Weight (kDa)

6.36

Isoelectric Point (pI)

49.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012933)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60400 AT5G60400 AT5G60400
fragaria_vesca FvH4_3g33040
malus_domestica MD03G1112500.v1.1 MD11G1131400.v1.1
prunus_persica Prupe.6G095800_v2.0.a1 Prupe.6G096000_v2.0.a1
pyrus_communis pycom11g10860
rosa_chinensis RchiOBHm_Chr5g0060411
rosa_multiflora Rmu_sc0003270.1_g000013
rosa_roxburghii Rroxscaffold_1G00020420
rosa_rugosa Rorug05G0329700
rosa_samantha Rh5AG394400 Rh5BG406600 Rh5CG430400 Rh5DG421700
rosa_wichuraiana Rw5G037100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 26
AccB7I CCANNNNNTGG 1 cut(s) 91
AciI CCGC 1 cut(s) 95
AclWI GGATC 2 cut(s) 105, 194
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 1 cut(s) 16
AluBI AGCT 4 cut(s) 143, 154, 230, 284
AluI AGCT 4 cut(s) 143, 154, 230, 284
AlwI GGATC 2 cut(s) 105, 194
AoxI GGCC 2 cut(s) 34, 117
ApeKI GCWGC 2 cut(s) 230, 284
AsuHPI GGTGA 2 cut(s) 73, 233
BanI GGYRCC 1 cut(s) 26
BauI CACGAG 1 cut(s) 86
BbvI GCAGC 2 cut(s) 217, 271
BccI CCATC 2 cut(s) 85, 212
BfaI CTAG 2 cut(s) 144, 227
BisI GCNGC 2 cut(s) 231, 285
BlsI GCNGC 2 cut(s) 232, 286
BmiI GGNNCC 1 cut(s) 28
BsaBI GATNNNNATC 2 cut(s) 102, 222
BsaJI CCNNGG 1 cut(s) 22
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse8I GATNNNNATC 2 cut(s) 102, 222
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 2 cut(s) 67, 223
BseJI GATNNNNATC 2 cut(s) 102, 222
BseLI CCNNNNNNNGG 1 cut(s) 91
BseRI GAGGAG 2 cut(s) 63, 164
BseXI GCAGC 2 cut(s) 217, 271
BshFI GGCC 2 cut(s) 36, 119
BshNI GGYRCC 1 cut(s) 26
BslFI GGGAC 1 cut(s) 235
BslI CCNNNNNNNGG 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 235
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 2 cut(s) 36, 119
Bsp143I GATC 7 cut(s) 97, 103, 134, 186, 210, 223, 244
Bsp19I CCATGG 1 cut(s) 22
BspACI CCGC 1 cut(s) 95
BspANI GGCC 2 cut(s) 36, 119
BspHI TCATGA 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 28
BspPI GGATC 2 cut(s) 105, 194
BspT107I GGYRCC 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 7 cut(s) 97, 103, 134, 186, 210, 223, 244
BssSI CACGAG 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 22
Bst2BI CACGAG 1 cut(s) 86
Bst6I CTCTTC 2 cut(s) 106, 201
BstDEI CTNAG 1 cut(s) 288
BstDSI CCRYGG 1 cut(s) 22
BstF5I GGATG 2 cut(s) 67, 223
BstKTI GATC 7 cut(s) 100, 106, 137, 189, 213, 226, 247
BstMBI GATC 7 cut(s) 97, 103, 134, 186, 210, 223, 244
BstMWI GCNNNNNNNGC 2 cut(s) 33, 284
BstV1I GCAGC 2 cut(s) 217, 271
BsuRI GGCC 2 cut(s) 36, 119
BtgI CCRYGG 1 cut(s) 22
BtsCI GGATG 2 cut(s) 67, 223
CciI TCATGA 1 cut(s) 100
CviAII CATG 5 cut(s) 10, 23, 101, 121, 242
CviJI RGCY 7 cut(s) 36, 119, 143, 154, 230, 266, 284
CviKI_1 RGCY 7 cut(s) 36, 119, 143, 154, 230, 266, 284
DdeI CTNAG 1 cut(s) 288
DpnI GATC 7 cut(s) 99, 105, 136, 188, 212, 225, 246
DpnII GATC 7 cut(s) 97, 103, 134, 186, 210, 223, 244
Eam1104I CTCTTC 2 cut(s) 106, 201
EarI CTCTTC 2 cut(s) 106, 201
EciI GGCGGA 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 5 cut(s) 13, 26, 104, 124, 245
FaiI YATR 6 cut(s) 11, 24, 46, 102, 122, 243
FaqI GGGAC 1 cut(s) 235
FatI CATG 5 cut(s) 9, 22, 100, 120, 241
Fnu4HI GCNGC 2 cut(s) 231, 285
FokI GGATG 2 cut(s) 54, 230
Fsp4HI GCNGC 2 cut(s) 231, 285
FspBI CTAG 2 cut(s) 144, 227
GluI GCNGC 2 cut(s) 231, 285
HaeIII GGCC 2 cut(s) 36, 119
Hin1II CATG 5 cut(s) 13, 26, 104, 124, 245
HinfI GANTC 1 cut(s) 163
HphI GGTGA 2 cut(s) 73, 233
Hpy188I TCNGA 2 cut(s) 108, 191
Hpy188III TCNNGA 3 cut(s) 101, 138, 167
HpyAV CCTTC 1 cut(s) 47
HpyCH4V TGCA 2 cut(s) 4, 241
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 284
HpyF3I CTNAG 1 cut(s) 288
Hsp92II CATG 5 cut(s) 13, 26, 104, 124, 245
Kzo9I GATC 7 cut(s) 97, 103, 134, 186, 210, 223, 244
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 2 cut(s) 39, 152
Lsp1109I GCAGC 2 cut(s) 217, 271
MaeI CTAG 2 cut(s) 144, 227
MalI GATC 7 cut(s) 99, 105, 136, 188, 212, 225, 246
MboI GATC 7 cut(s) 97, 103, 134, 186, 210, 223, 244
MboII GAAGA 2 cut(s) 123, 218
MluCI AATT 1 cut(s) 268
MnlI CCTC 7 cut(s) 29, 51, 81, 84, 109, 142, 177
Mva1269I GAATGC 1 cut(s) 163
MwoI GCNNNNNNNGC 2 cut(s) 33, 284
NcoI CCATGG 1 cut(s) 22
NdeII GATC 7 cut(s) 97, 103, 134, 186, 210, 223, 244
NlaIII CATG 5 cut(s) 13, 26, 104, 124, 245
NlaIV GGNNCC 1 cut(s) 28
PagI TCATGA 1 cut(s) 100
PctI GAATGC 1 cut(s) 163
PfeI GAWTC 1 cut(s) 163
PflMI CCANNNNNTGG 1 cut(s) 91
PkrI GCNGC 2 cut(s) 232, 286
PspN4I GGNNCC 1 cut(s) 28
SatI GCNGC 2 cut(s) 231, 285
Sau3AI GATC 7 cut(s) 97, 103, 134, 186, 210, 223, 244
SetI ASST 6 cut(s) 21, 32, 145, 156, 232, 286
Sse9I AATT 1 cut(s) 268
SsiI CCGC 1 cut(s) 95
SspMI CTAG 2 cut(s) 144, 227
StyI CCWWGG 1 cut(s) 22
TaqI TCGA 1 cut(s) 137
TasI AATT 1 cut(s) 268
TfiI GAWTC 1 cut(s) 163
TseI GCWGC 2 cut(s) 230, 284
TspDTI ATGAA 1 cut(s) 137
TspGWI ACGGA 1 cut(s) 230
Van91I CCANNNNNTGG 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 1 cut(s) 29
XspI CTAG 2 cut(s) 144, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.