transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD03G1122100.v1.1 MD03G1122200.v1.1 |
| prunus_persica | Prupe.6G105000_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr5g0058381 |
| rosa_multiflora | Rmu_sc0001849.1_g000013 |
| rosa_roxburghii | Rroxscaffold_1G00022210 Rroxscaffold_1G00022740 |
| rosa_rugosa | Rorug05G0313500 |
| rosa_samantha | Rh5DG403000 Rh5DG407400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 54, 195 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 103 |
| AgsI | TTSAA | 1 cut(s) | 69 |
| AjiI | CACGTC | 1 cut(s) | 92 |
| AluBI | AGCT | 1 cut(s) | 103 |
| AluI | AGCT | 1 cut(s) | 103 |
| Alw21I | GWGCWC | 1 cut(s) | 44 |
| AoxI | GGCC | 1 cut(s) | 170 |
| ApeKI | GCWGC | 3 cut(s) | 14, 17, 100 |
| AsuC2I | CCSGG | 1 cut(s) | 135 |
| AsuHPI | GGTGA | 1 cut(s) | 209 |
| BbsI | GAAGAC | 1 cut(s) | 68 |
| Bbv12I | GWGCWC | 1 cut(s) | 44 |
| BbvI | GCAGC | 2 cut(s) | 4, 112 |
| BccI | CCATC | 3 cut(s) | 28, 74, 107 |
| BciVI | GTATCC | 1 cut(s) | 141 |
| BcnI | CCSGG | 1 cut(s) | 135 |
| BfuI | GTATCC | 1 cut(s) | 141 |
| BisI | GCNGC | 4 cut(s) | 15, 18, 54, 101 |
| BlsI | GCNGC | 4 cut(s) | 16, 19, 55, 102 |
| Bme1390I | CCNGG | 1 cut(s) | 135 |
| BmgBI | CACGTC | 1 cut(s) | 92 |
| BmrFI | CCNGG | 1 cut(s) | 135 |
| BpiI | GAAGAC | 1 cut(s) | 68 |
| BpuMI | CCSGG | 1 cut(s) | 135 |
| BsaBI | GATNNNNATC | 1 cut(s) | 84 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 103 |
| Bse118I | RCCGGY | 1 cut(s) | 96 |
| Bse8I | GATNNNNATC | 1 cut(s) | 84 |
| BseGI | GGATG | 2 cut(s) | 112, 118 |
| BseJI | GATNNNNATC | 1 cut(s) | 84 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 103 |
| BseXI | GCAGC | 2 cut(s) | 4, 112 |
| BshFI | GGCC | 1 cut(s) | 172 |
| BsiHKAI | GWGCWC | 1 cut(s) | 44 |
| BsiSI | CCGG | 2 cut(s) | 97, 134 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 103 |
| BsnI | GGCC | 1 cut(s) | 172 |
| Bsp1286I | GDGCHC | 1 cut(s) | 44 |
| BspACI | CCGC | 2 cut(s) | 54, 195 |
| BspANI | GGCC | 1 cut(s) | 172 |
| BspQI | GCTCTTC | 1 cut(s) | 49 |
| BsrFI | RCCGGY | 1 cut(s) | 96 |
| BssAI | RCCGGY | 1 cut(s) | 96 |
| Bst6I | CTCTTC | 1 cut(s) | 49 |
| BstF5I | GGATG | 2 cut(s) | 112, 118 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 192 |
| BstSCI | CCNGG | 1 cut(s) | 133 |
| BstV1I | GCAGC | 2 cut(s) | 4, 112 |
| BstV2I | GAAGAC | 1 cut(s) | 68 |
| BsuI | GTATCC | 1 cut(s) | 141 |
| BsuRI | GGCC | 1 cut(s) | 172 |
| BtrI | CACGTC | 1 cut(s) | 92 |
| BtsCI | GGATG | 2 cut(s) | 112, 118 |
| BtsI | GCAGTG | 2 cut(s) | 63, 148 |
| BtsIMutI | CAGTG | 2 cut(s) | 63, 148 |
| Cfr10I | RCCGGY | 1 cut(s) | 96 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 190 |
| CviJI | RGCY | 3 cut(s) | 14, 103, 172 |
| CviKI_1 | RGCY | 3 cut(s) | 14, 103, 172 |
| Eam1104I | CTCTTC | 1 cut(s) | 49 |
| EarI | CTCTTC | 1 cut(s) | 49 |
| Eco32I | GATATC | 1 cut(s) | 86 |
| EcoRV | GATATC | 1 cut(s) | 86 |
| Fnu4HI | GCNGC | 4 cut(s) | 15, 18, 54, 101 |
| FokI | GGATG | 2 cut(s) | 119, 125 |
| Fsp4HI | GCNGC | 4 cut(s) | 15, 18, 54, 101 |
| GluI | GCNGC | 4 cut(s) | 15, 18, 54, 101 |
| HaeIII | GGCC | 1 cut(s) | 172 |
| HapII | CCGG | 2 cut(s) | 97, 134 |
| HincII | GTYRAC | 1 cut(s) | 148 |
| HindII | GTYRAC | 1 cut(s) | 148 |
| HpaII | CCGG | 2 cut(s) | 97, 134 |
| HphI | GGTGA | 1 cut(s) | 209 |
| Hpy166II | GTNNAC | 1 cut(s) | 148 |
| Hpy8I | GTNNAC | 1 cut(s) | 148 |
| Hpy99I | CGWCG | 1 cut(s) | 93 |
| HpyAV | CCTTC | 1 cut(s) | 112 |
| HpyCH4IV | ACGT | 1 cut(s) | 91 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 192 |
| HpySE526I | ACGT | 1 cut(s) | 91 |
| LguI | GCTCTTC | 1 cut(s) | 49 |
| LpnPI | CCDG | 5 cut(s) | 89, 110, 147, 154, 186 |
| Lsp1109I | GCAGC | 2 cut(s) | 4, 112 |
| MaeII | ACGT | 1 cut(s) | 91 |
| MaeIII | GTNAC | 3 cut(s) | 92, 197, 212 |
| MboII | GAAGA | 3 cut(s) | 36, 73, 134 |
| MhlI | GDGCHC | 1 cut(s) | 44 |
| MluCI | AATT | 1 cut(s) | 24 |
| MnlI | CCTC | 1 cut(s) | 103 |
| MspA1I | CMGCKG | 1 cut(s) | 103 |
| MspI | CCGG | 2 cut(s) | 97, 134 |
| MspR9I | CCNGG | 1 cut(s) | 135 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 192 |
| NciI | CCSGG | 1 cut(s) | 135 |
| NmuCI | GTSAC | 3 cut(s) | 92, 197, 212 |
| PciSI | GCTCTTC | 1 cut(s) | 49 |
| PfoI | TCCNGGA | 1 cut(s) | 133 |
| PkrI | GCNGC | 4 cut(s) | 16, 19, 55, 102 |
| PvuII | CAGCTG | 1 cut(s) | 103 |
| SapI | GCTCTTC | 1 cut(s) | 49 |
| SatI | GCNGC | 4 cut(s) | 15, 18, 54, 101 |
| ScrFI | CCNGG | 1 cut(s) | 135 |
| SduI | GDGCHC | 1 cut(s) | 44 |
| SetI | ASST | 2 cut(s) | 94, 105 |
| Sse9I | AATT | 1 cut(s) | 24 |
| SsiI | CCGC | 2 cut(s) | 54, 195 |
| StyD4I | CCNGG | 1 cut(s) | 133 |
| TaiI | ACGT | 1 cut(s) | 94 |
| TaqI | TCGA | 3 cut(s) | 88, 165, 180 |
| TasI | AATT | 1 cut(s) | 24 |
| TauI | GCSGC | 1 cut(s) | 56 |
| TscAI | CASTG | 2 cut(s) | 63, 148 |
| TseFI | GTSAC | 3 cut(s) | 92, 197, 212 |
| TseI | GCWGC | 3 cut(s) | 14, 17, 100 |
| Tsp45I | GTSAC | 3 cut(s) | 92, 197, 212 |
| TspDTI | ATGAA | 3 cut(s) | 17, 87, 151 |
| TspRI | CASTG | 2 cut(s) | 63, 148 |