transposition, RNA-mediated
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD03G1122100.v1.1 MD03G1122200.v1.1 |
| prunus_persica | Prupe.6G105000_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr5g0058381 |
| rosa_multiflora | Rmu_sc0001849.1_g000013 |
| rosa_roxburghii | Rroxscaffold_1G00022210 Rroxscaffold_1G00022740 |
| rosa_rugosa | Rorug05G0313500 |
| rosa_samantha | Rh5DG403000 Rh5DG407400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfiI | CCNNNNNNNGG | 3 cut(s) | 49, 55, 118 |
| AgsI | TTSAA | 2 cut(s) | 15, 127 |
| AjnI | CCWGG | 2 cut(s) | 48, 113 |
| AoxI | GGCC | 1 cut(s) | 116 |
| AsuC2I | CCSGG | 1 cut(s) | 81 |
| AsuHPI | GGTGA | 2 cut(s) | 16, 155 |
| BbsI | GAAGAC | 1 cut(s) | 14 |
| BccI | CCATC | 1 cut(s) | 53 |
| BciT130I | CCWGG | 2 cut(s) | 50, 115 |
| BciVI | GTATCC | 1 cut(s) | 87 |
| BcnI | CCSGG | 1 cut(s) | 81 |
| BfuI | GTATCC | 1 cut(s) | 87 |
| Bme1390I | CCNGG | 3 cut(s) | 50, 81, 115 |
| BmrFI | CCNGG | 3 cut(s) | 50, 81, 115 |
| BpiI | GAAGAC | 1 cut(s) | 14 |
| BpuMI | CCSGG | 1 cut(s) | 81 |
| BsaJI | CCNNGG | 1 cut(s) | 113 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 49, 55, 118 |
| BseBI | CCWGG | 2 cut(s) | 50, 115 |
| BseDI | CCNNGG | 1 cut(s) | 113 |
| BseGI | GGATG | 3 cut(s) | 58, 64, 108 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 49, 55, 118 |
| BshFI | GGCC | 1 cut(s) | 118 |
| BsiSI | CCGG | 2 cut(s) | 80, 119 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 49, 55, 118 |
| BsnI | GGCC | 1 cut(s) | 118 |
| BspANI | GGCC | 1 cut(s) | 118 |
| BssECI | CCNNGG | 1 cut(s) | 113 |
| Bst2UI | CCWGG | 2 cut(s) | 50, 115 |
| Bst4CI | ACNGT | 2 cut(s) | 26, 91 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 53 |
| BstF5I | GGATG | 3 cut(s) | 58, 64, 108 |
| BstNI | CCWGG | 2 cut(s) | 50, 115 |
| BstSCI | CCNGG | 3 cut(s) | 48, 79, 113 |
| BstV2I | GAAGAC | 1 cut(s) | 14 |
| BsuI | GTATCC | 1 cut(s) | 87 |
| BsuRI | GGCC | 1 cut(s) | 118 |
| BtsCI | GGATG | 3 cut(s) | 58, 64, 108 |
| BtsIMutI | CAGTG | 1 cut(s) | 87 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 121, 156 |
| CviJI | RGCY | 1 cut(s) | 118 |
| CviKI_1 | RGCY | 1 cut(s) | 118 |
| Eco32I | GATATC | 1 cut(s) | 32 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 53 |
| EcoRII | CCWGG | 2 cut(s) | 48, 113 |
| EcoRV | GATATC | 1 cut(s) | 32 |
| FokI | GGATG | 3 cut(s) | 65, 71, 95 |
| HaeIII | GGCC | 1 cut(s) | 118 |
| HapII | CCGG | 2 cut(s) | 80, 119 |
| HpaII | CCGG | 2 cut(s) | 80, 119 |
| HphI | GGTGA | 2 cut(s) | 16, 155 |
| Hpy166II | GTNNAC | 1 cut(s) | 94 |
| Hpy8I | GTNNAC | 1 cut(s) | 94 |
| HpyCH4III | ACNGT | 2 cut(s) | 26, 91 |
| LpnPI | CCDG | 6 cut(s) | 35, 62, 93, 100, 127, 132 |
| MaeIII | GTNAC | 1 cut(s) | 143 |
| MboII | GAAGA | 1 cut(s) | 19 |
| MnlI | CCTC | 1 cut(s) | 49 |
| MslI | CAYNNNNRTG | 1 cut(s) | 51 |
| MspI | CCGG | 2 cut(s) | 80, 119 |
| MspR9I | CCNGG | 3 cut(s) | 50, 81, 115 |
| MvaI | CCWGG | 2 cut(s) | 50, 115 |
| NciI | CCSGG | 1 cut(s) | 81 |
| NmuCI | GTSAC | 1 cut(s) | 143 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 40, 156 |
| PfoI | TCCNGGA | 1 cut(s) | 79 |
| Psp6I | CCWGG | 2 cut(s) | 48, 113 |
| PspGI | CCWGG | 2 cut(s) | 48, 113 |
| RseI | CAYNNNNRTG | 1 cut(s) | 51 |
| ScrFI | CCNGG | 3 cut(s) | 50, 81, 115 |
| SetI | ASST | 1 cut(s) | 51 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 51 |
| StyD4I | CCNGG | 3 cut(s) | 48, 79, 113 |
| TaaI | ACNGT | 2 cut(s) | 26, 91 |
| TaqI | TCGA | 1 cut(s) | 34 |
| TaqII | GACCGA | 1 cut(s) | 57 |
| TscAI | CASTG | 1 cut(s) | 94 |
| TseFI | GTSAC | 1 cut(s) | 143 |
| Tsp45I | GTSAC | 1 cut(s) | 143 |
| TspDTI | ATGAA | 1 cut(s) | 33 |
| TspRI | CASTG | 1 cut(s) | 94 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 53 |