Rroxscaffold_1G00022740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0018497
Physical Location & Seq
Forward (+)
28119513 .. 28120861
1349 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00022740.1

Sequence Viewer

Length: 279 bp
ATGGAAAACATTGATTTTGATAGAGGGGATGCAAATCGGCAATTTTTGCCAAGTTCAGGGGCTGAAATATTCCAAAAGCTCATAATGAGATTCCTGGCTGTTGCTCTAATTTTGTTGATGATGAGCTCTGCATTTGCTGGCCGGCAACTTGATGATGATCGACATGGCAACCGACAGCTAGTTCAGGAGAGCAAGACCGTCAATCATGCTGGGTATCCTGGAACCAGTACGGCTAACCATGGTAGCATCCGTGGAGCCAGTGTGAGAAACCACCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.19

Weight (kDa)

8.34

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018497)

Species Orthologous Gene IDs
malus_domestica MD03G1122100.v1.1 MD03G1122200.v1.1
prunus_persica Prupe.6G105000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0058381
rosa_multiflora Rmu_sc0001849.1_g000013
rosa_roxburghii Rroxscaffold_1G00022210 Rroxscaffold_1G00022740
rosa_rugosa Rorug05G0313500
rosa_samantha Rh5DG403000 Rh5DG407400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 139
AfaI GTAC 1 cut(s) 229
AfiI CCNNNNNNNGG 1 cut(s) 56
AjnI CCWGG 2 cut(s) 93, 217
AluBI AGCT 3 cut(s) 79, 126, 178
AluI AGCT 3 cut(s) 79, 126, 178
Alw21I GWGCWC 1 cut(s) 128
AlwNI CAGNNNCTG 1 cut(s) 62
AoxI GGCC 1 cut(s) 139
BanII GRGCYC 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 128
BceAI ACGGC 1 cut(s) 246
BciT130I CCWGG 2 cut(s) 95, 219
BciVI GTATCC 1 cut(s) 225
BfaI CTAG 1 cut(s) 179
BfuI GTATCC 1 cut(s) 225
Bme1390I CCNGG 2 cut(s) 95, 219
BmiI GGNNCC 2 cut(s) 223, 256
BmrFI CCNGG 2 cut(s) 95, 219
BmsI GCATC 2 cut(s) 19, 255
BsaBI GATNNNNATC 2 cut(s) 33, 156
BsaJI CCNNGG 2 cut(s) 238, 250
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse118I RCCGGY 1 cut(s) 141
Bse1I ACTGG 2 cut(s) 225, 258
Bse8I GATNNNNATC 2 cut(s) 33, 156
BseBI CCWGG 2 cut(s) 95, 219
BseDI CCNNGG 2 cut(s) 238, 250
BseGI GGATG 2 cut(s) 34, 246
BseJI GATNNNNATC 2 cut(s) 33, 156
BseLI CCNNNNNNNGG 1 cut(s) 56
BseNI ACTGG 2 cut(s) 225, 258
BseYI CCCAGC 1 cut(s) 209
BshFI GGCC 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 128
BsiSI CCGG 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 56
BsnI GGCC 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 1 cut(s) 157
Bsp19I CCATGG 1 cut(s) 238
BspANI GGCC 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 223, 256
BsrFI RCCGGY 1 cut(s) 141
BsrI ACTGG 2 cut(s) 225, 258
BssAI RCCGGY 1 cut(s) 141
BssECI CCNNGG 2 cut(s) 238, 250
BssMI GATC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 238
Bst2UI CCWGG 2 cut(s) 95, 219
Bst4CI ACNGT 1 cut(s) 199
BstAPI GCANNNNNTGC 1 cut(s) 46
BstC8I GCNNGC 2 cut(s) 139, 143
BstDSI CCRYGG 2 cut(s) 238, 250
BstF5I GGATG 2 cut(s) 34, 246
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNI CCWGG 2 cut(s) 95, 219
BstSCI CCNGG 2 cut(s) 93, 217
BsuI GTATCC 1 cut(s) 225
BsuRI GGCC 1 cut(s) 141
BtgI CCRYGG 2 cut(s) 238, 250
BtsCI GGATG 2 cut(s) 34, 246
BtsIMutI CAGTG 1 cut(s) 265
Cac8I GCNNGC 2 cut(s) 139, 143
CaiI CAGNNNCTG 1 cut(s) 62
Cfr10I RCCGGY 1 cut(s) 141
Csp6I GTAC 1 cut(s) 228
CviAII CATG 3 cut(s) 164, 206, 239
CviJI RGCY 8 cut(s) 62, 79, 98, 126, 141, 178, 233, 257
CviKI_1 RGCY 8 cut(s) 62, 79, 98, 126, 141, 178, 233, 257
CviQI GTAC 1 cut(s) 228
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 139
Ecl136II GAGCTC 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 128
Eco53kI GAGCTC 1 cut(s) 126
EcoICRI GAGCTC 1 cut(s) 126
EcoRII CCWGG 2 cut(s) 93, 217
EcoT14I CCWWGG 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 238
FaeI CATG 3 cut(s) 167, 209, 242
FaiI YATR 4 cut(s) 83, 165, 207, 240
FatI CATG 3 cut(s) 163, 205, 238
FokI GGATG 2 cut(s) 41, 233
FriOI GRGCYC 1 cut(s) 128
FspBI CTAG 1 cut(s) 179
GsaI CCCAGC 1 cut(s) 213
HaeIII GGCC 1 cut(s) 141
HapII CCGG 1 cut(s) 142
Hin1II CATG 3 cut(s) 167, 209, 242
HinfI GANTC 1 cut(s) 90
HpaII CCGG 1 cut(s) 142
Hpy188III TCNNGA 1 cut(s) 185
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 2 cut(s) 32, 131
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
Hsp92II CATG 3 cut(s) 167, 209, 242
KroI GCCGGC 1 cut(s) 141
KroNI GCCGGC 1 cut(s) 143
Kzo9I GATC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 254
LweI GCATC 2 cut(s) 19, 255
MaeI CTAG 1 cut(s) 179
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 128
MluCI AATT 2 cut(s) 41, 108
MnlI CCTC 1 cut(s) 17
MroNI GCCGGC 1 cut(s) 141
MseI TTAA 1 cut(s) 277
MspI CCGG 1 cut(s) 142
MspR9I CCNGG 2 cut(s) 95, 219
MvaI CCWGG 2 cut(s) 95, 219
MwoI GCNNNNNNNGC 1 cut(s) 46
NaeI GCCGGC 1 cut(s) 143
NcoI CCATGG 1 cut(s) 238
NdeII GATC 1 cut(s) 157
NgoMIV GCCGGC 1 cut(s) 141
NlaIII CATG 3 cut(s) 167, 209, 242
NlaIV GGNNCC 2 cut(s) 223, 256
PdiI GCCGGC 1 cut(s) 143
PfeI GAWTC 1 cut(s) 90
PfoI TCCNGGA 1 cut(s) 217
Psp124BI GAGCTC 1 cut(s) 128
Psp6I CCWGG 2 cut(s) 93, 217
PspFI CCCAGC 1 cut(s) 209
PspGI CCWGG 2 cut(s) 93, 217
PspN4I GGNNCC 2 cut(s) 223, 256
PstNI CAGNNNCTG 1 cut(s) 62
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
SacI GAGCTC 1 cut(s) 128
SaqAI TTAA 1 cut(s) 277
Sau3AI GATC 1 cut(s) 157
ScrFI CCNGG 2 cut(s) 95, 219
SduI GDGCHC 1 cut(s) 128
SetI ASST 3 cut(s) 81, 128, 180
SfaNI GCATC 2 cut(s) 19, 255
Sse9I AATT 2 cut(s) 41, 108
SspI AATATT 1 cut(s) 69
SspMI CTAG 1 cut(s) 179
SstI GAGCTC 1 cut(s) 128
StyD4I CCNGG 2 cut(s) 93, 217
StyI CCWWGG 1 cut(s) 238
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 1 cut(s) 160
TasI AATT 2 cut(s) 41, 108
TfiI GAWTC 1 cut(s) 90
Tru1I TTAA 1 cut(s) 277
Tru9I TTAA 1 cut(s) 277
TscAI CASTG 1 cut(s) 265
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 1 cut(s) 265
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.