Rmu_sc0001849.1_g000013

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001849.1
OG0018497
Physical Location & Seq
Reverse (-)
56967 .. 57221
255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001849.1_g000013.1.cds

Sequence Viewer

Length: 255 bp
atgagattcctggctgttgctctagttttgttgatgatgagctgtgcatttgctggccggcaacttgatgatgatcgaaatggcagccgacagctagttcaggagaccaagaccgtcaatcatgctgggtatcctggaaccagtacgggtaaccacggtagcatccatggagccagtgtgagtaaccgccattacatccctaggcaggactttaacagcaagggtagcagtgatggtgggaatggcagtgactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

8.97

Weight (kDa)

8.0

Isoelectric Point (pI)

31.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018497)

Species Orthologous Gene IDs
malus_domestica MD03G1122100.v1.1 MD03G1122200.v1.1
prunus_persica Prupe.6G105000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0058381
rosa_multiflora Rmu_sc0001849.1_g000013
rosa_roxburghii Rroxscaffold_1G00022210 Rroxscaffold_1G00022740
rosa_rugosa Rorug05G0313500
rosa_samantha Rh5DG403000 Rh5DG407400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 187
AcoI YGGCCR 1 cut(s) 55
AfaI GTAC 1 cut(s) 145
AfiI CCNNNNNNNGG 1 cut(s) 205
AjnI CCWGG 2 cut(s) 9, 133
AluBI AGCT 2 cut(s) 42, 94
AluI AGCT 2 cut(s) 42, 94
Alw26I GTCTC 1 cut(s) 98
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 84
AspA2I CCTAGG 1 cut(s) 200
AvrII CCTAGG 1 cut(s) 200
BbvI GCAGC 1 cut(s) 96
BccI CCATC 1 cut(s) 227
BciT130I CCWGG 2 cut(s) 11, 135
BciVI GTATCC 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 3 cut(s) 23, 95, 201
BfuI GTATCC 1 cut(s) 141
BisI GCNGC 1 cut(s) 85
BlnI CCTAGG 1 cut(s) 200
BlsI GCNGC 1 cut(s) 86
Bme1390I CCNGG 2 cut(s) 11, 135
BmiI GGNNCC 2 cut(s) 139, 172
BmrFI CCNGG 2 cut(s) 11, 135
BmsI GCATC 1 cut(s) 171
BsaBI GATNNNNATC 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 98
BsaJI CCNNGG 3 cut(s) 154, 166, 200
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse118I RCCGGY 1 cut(s) 57
Bse1I ACTGG 2 cut(s) 141, 174
Bse8I GATNNNNATC 1 cut(s) 72
BseBI CCWGG 2 cut(s) 11, 135
BseDI CCNNGG 3 cut(s) 154, 166, 200
BseGI GGATG 2 cut(s) 162, 195
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 205
BseNI ACTGG 2 cut(s) 141, 174
BseXI GCAGC 1 cut(s) 96
BseYI CCCAGC 1 cut(s) 125
BshFI GGCC 1 cut(s) 57
BsiSI CCGG 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 98
BsnI GGCC 1 cut(s) 57
Bso31I GGTCTC 1 cut(s) 98
Bsp143I GATC 1 cut(s) 73
Bsp19I CCATGG 1 cut(s) 166
BspACI CCGC 1 cut(s) 187
BspANI GGCC 1 cut(s) 57
BspLI GGNNCC 2 cut(s) 139, 172
BspTNI GGTCTC 1 cut(s) 98
BsrFI RCCGGY 1 cut(s) 57
BsrI ACTGG 2 cut(s) 141, 174
BssAI RCCGGY 1 cut(s) 57
BssECI CCNNGG 3 cut(s) 154, 166, 200
BssMI GATC 1 cut(s) 73
BssT1I CCWWGG 2 cut(s) 166, 200
Bst2UI CCWGG 2 cut(s) 11, 135
Bst4CI ACNGT 2 cut(s) 115, 158
BstC8I GCNNGC 2 cut(s) 55, 59
BstDSI CCRYGG 2 cut(s) 154, 166
BstEII GGTNACC 1 cut(s) 149
BstF5I GGATG 2 cut(s) 162, 195
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 225
BstNI CCWGG 2 cut(s) 11, 135
BstPI GGTNACC 1 cut(s) 149
BstSCI CCNGG 2 cut(s) 9, 133
BstV1I GCAGC 1 cut(s) 96
BsuI GTATCC 1 cut(s) 141
BsuRI GGCC 1 cut(s) 57
BtgI CCRYGG 2 cut(s) 154, 166
BtsCI GGATG 2 cut(s) 162, 195
BtsI GCAGTG 2 cut(s) 235, 253
BtsIMutI CAGTG 3 cut(s) 181, 235, 253
Cac8I GCNNGC 2 cut(s) 55, 59
Cfr10I RCCGGY 1 cut(s) 57
Csp6I GTAC 1 cut(s) 144
CviAII CATG 2 cut(s) 122, 167
CviJI RGCY 6 cut(s) 14, 42, 57, 87, 94, 173
CviKI_1 RGCY 6 cut(s) 14, 42, 57, 87, 94, 173
CviQI GTAC 1 cut(s) 144
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 55
Eco130I CCWWGG 2 cut(s) 166, 200
Eco31I GGTCTC 1 cut(s) 98
Eco91I GGTNACC 1 cut(s) 149
EcoO65I GGTNACC 1 cut(s) 149
EcoRII CCWGG 2 cut(s) 9, 133
EcoT14I CCWWGG 2 cut(s) 166, 200
ErhI CCWWGG 2 cut(s) 166, 200
FaeI CATG 2 cut(s) 125, 170
FaiI YATR 2 cut(s) 123, 168
FatI CATG 2 cut(s) 121, 166
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 2 cut(s) 149, 182
Fsp4HI GCNGC 1 cut(s) 85
FspBI CTAG 3 cut(s) 23, 95, 201
GluI GCNGC 1 cut(s) 85
GsaI CCCAGC 1 cut(s) 129
HaeIII GGCC 1 cut(s) 57
HapII CCGG 1 cut(s) 58
Hin1II CATG 2 cut(s) 125, 170
HinfI GANTC 1 cut(s) 6
HpaII CCGG 1 cut(s) 58
Hpy188III TCNNGA 1 cut(s) 101
HpyCH4III ACNGT 2 cut(s) 115, 158
HpyCH4V TGCA 1 cut(s) 47
HpyF10VI GCNNNNNNNGC 1 cut(s) 225
Hsp92II CATG 2 cut(s) 125, 170
KroI GCCGGC 1 cut(s) 57
KroNI GCCGGC 1 cut(s) 59
Kzo9I GATC 1 cut(s) 73
LmnI GCTCC 1 cut(s) 170
Lsp1109I GCAGC 1 cut(s) 96
LweI GCATC 1 cut(s) 171
MaeI CTAG 3 cut(s) 23, 95, 201
MaeIII GTNAC 3 cut(s) 149, 182, 248
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MroNI GCCGGC 1 cut(s) 57
MseI TTAA 1 cut(s) 213
MspI CCGG 1 cut(s) 58
MspR9I CCNGG 2 cut(s) 11, 135
MvaI CCWGG 2 cut(s) 11, 135
MwoI GCNNNNNNNGC 1 cut(s) 225
NaeI GCCGGC 1 cut(s) 59
NcoI CCATGG 1 cut(s) 166
NdeII GATC 1 cut(s) 73
NgoMIV GCCGGC 1 cut(s) 57
NlaIII CATG 2 cut(s) 125, 170
NlaIV GGNNCC 2 cut(s) 139, 172
NmuCI GTSAC 1 cut(s) 248
PdiI GCCGGC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 6
PfoI TCCNGGA 1 cut(s) 133
PkrI GCNGC 1 cut(s) 86
Psp6I CCWGG 2 cut(s) 9, 133
PspEI GGTNACC 1 cut(s) 149
PspFI CCCAGC 1 cut(s) 125
PspGI CCWGG 2 cut(s) 9, 133
PspN4I GGNNCC 2 cut(s) 139, 172
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 1 cut(s) 73
ScrFI CCNGG 2 cut(s) 11, 135
SetI ASST 2 cut(s) 44, 96
SfaNI GCATC 1 cut(s) 171
SsiI CCGC 1 cut(s) 187
SspMI CTAG 3 cut(s) 23, 95, 201
StyD4I CCNGG 2 cut(s) 9, 133
StyI CCWWGG 2 cut(s) 166, 200
TaaI ACNGT 2 cut(s) 115, 158
TaqI TCGA 1 cut(s) 76
TfiI GAWTC 1 cut(s) 6
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 3 cut(s) 181, 235, 253
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 1 cut(s) 84
Tsp45I GTSAC 1 cut(s) 248
TspRI CASTG 3 cut(s) 181, 235, 253
XmaJI CCTAGG 1 cut(s) 200
XspI CTAG 3 cut(s) 23, 95, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.