Rh5DG403000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0018497
Physical Location & Seq
Reverse (-)
63836248 .. 63836774
527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG403000.1

Sequence Viewer

Length: 255 bp
ATGAGATTCCTGGCTGTTGCTCTAATTTTGTTGATGATGAGCTCTGCATTTGCTGGCCGGCAACTTGATGATGATCGACATGGCAGCCGACAGCTAGTTCAGGAGACCAAGACCGTCAATCATGCTGGGGATCCTGGAACCAGTACGGGTAAACACGGTAGCATCCCTGGAGCCAGTGTGAGTAACCACCATTACATCCCTAGGCAGGACTTTAACAGCAAGGGTGGCAGTGATGGTGGGAATGGCAGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

8.86

Weight (kDa)

6.97

Isoelectric Point (pI)

28.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018497)

Species Orthologous Gene IDs
malus_domestica MD03G1122100.v1.1 MD03G1122200.v1.1
prunus_persica Prupe.6G105000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0058381
rosa_multiflora Rmu_sc0001849.1_g000013
rosa_roxburghii Rroxscaffold_1G00022210 Rroxscaffold_1G00022740
rosa_rugosa Rorug05G0313500
rosa_samantha Rh5DG403000 Rh5DG407400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 125, 138
AcoI YGGCCR 1 cut(s) 55
AfaI GTAC 1 cut(s) 145
AfiI CCNNNNNNNGG 1 cut(s) 205
AjnI CCWGG 3 cut(s) 9, 133, 166
AluBI AGCT 2 cut(s) 42, 94
AluI AGCT 2 cut(s) 42, 94
Alw21I GWGCWC 1 cut(s) 44
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 2 cut(s) 125, 138
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 84
AspA2I CCTAGG 1 cut(s) 200
AvrII CCTAGG 1 cut(s) 200
BamHI GGATCC 1 cut(s) 130
BanII GRGCYC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 96
BccI CCATC 1 cut(s) 227
BciT130I CCWGG 3 cut(s) 11, 135, 168
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 2 cut(s) 95, 201
BisI GCNGC 1 cut(s) 85
BlnI CCTAGG 1 cut(s) 200
BlsI GCNGC 1 cut(s) 86
Bme1390I CCNGG 3 cut(s) 11, 135, 168
BmiI GGNNCC 3 cut(s) 132, 139, 172
BmrFI CCNGG 3 cut(s) 11, 135, 168
BmsI GCATC 1 cut(s) 171
BpmI CTGGAG 1 cut(s) 189
BsaBI GATNNNNATC 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 98
BsaJI CCNNGG 2 cut(s) 166, 200
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse118I RCCGGY 1 cut(s) 57
Bse1I ACTGG 2 cut(s) 141, 174
Bse8I GATNNNNATC 1 cut(s) 72
BseBI CCWGG 3 cut(s) 11, 135, 168
BseDI CCNNGG 2 cut(s) 166, 200
BseGI GGATG 2 cut(s) 162, 195
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 205
BseNI ACTGG 2 cut(s) 141, 174
BseXI GCAGC 1 cut(s) 96
BseYI CCCAGC 1 cut(s) 125
BshFI GGCC 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 44
BsiSI CCGG 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 98
BsnI GGCC 1 cut(s) 57
Bso31I GGTCTC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 2 cut(s) 73, 130
BspANI GGCC 1 cut(s) 57
BspLI GGNNCC 3 cut(s) 132, 139, 172
BspPI GGATC 2 cut(s) 125, 138
BspTNI GGTCTC 1 cut(s) 98
BsrFI RCCGGY 1 cut(s) 57
BsrI ACTGG 2 cut(s) 141, 174
BssAI RCCGGY 1 cut(s) 57
BssECI CCNNGG 2 cut(s) 166, 200
BssMI GATC 2 cut(s) 73, 130
BssT1I CCWWGG 1 cut(s) 200
Bst2UI CCWGG 3 cut(s) 11, 135, 168
Bst4CI ACNGT 2 cut(s) 115, 158
BstC8I GCNNGC 2 cut(s) 55, 59
BstF5I GGATG 2 cut(s) 162, 195
BstKTI GATC 2 cut(s) 76, 133
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 2 cut(s) 73, 130
BstMWI GCNNNNNNNGC 1 cut(s) 225
BstNI CCWGG 3 cut(s) 11, 135, 168
BstSCI CCNGG 3 cut(s) 9, 133, 166
BstV1I GCAGC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BsuRI GGCC 1 cut(s) 57
BtsCI GGATG 2 cut(s) 162, 195
BtsI GCAGTG 2 cut(s) 235, 253
BtsIMutI CAGTG 3 cut(s) 181, 235, 253
Cac8I GCNNGC 2 cut(s) 55, 59
Cfr10I RCCGGY 1 cut(s) 57
Csp6I GTAC 1 cut(s) 144
CviAII CATG 2 cut(s) 80, 122
CviJI RGCY 6 cut(s) 14, 42, 57, 87, 94, 173
CviKI_1 RGCY 6 cut(s) 14, 42, 57, 87, 94, 173
CviQI GTAC 1 cut(s) 144
DpnI GATC 2 cut(s) 75, 132
DpnII GATC 2 cut(s) 73, 130
EaeI YGGCCR 1 cut(s) 55
Ecl136II GAGCTC 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 200
Eco24I GRGCYC 1 cut(s) 44
Eco31I GGTCTC 1 cut(s) 98
Eco53kI GAGCTC 1 cut(s) 42
EcoICRI GAGCTC 1 cut(s) 42
EcoRII CCWGG 3 cut(s) 9, 133, 166
EcoT14I CCWWGG 1 cut(s) 200
EcoT38I GRGCYC 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 2 cut(s) 83, 125
FaiI YATR 2 cut(s) 81, 123
FatI CATG 2 cut(s) 79, 121
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 2 cut(s) 149, 182
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 85
FspBI CTAG 2 cut(s) 95, 201
GluI GCNGC 1 cut(s) 85
GsaI CCCAGC 1 cut(s) 129
GsuI CTGGAG 1 cut(s) 189
HaeIII GGCC 1 cut(s) 57
HapII CCGG 1 cut(s) 58
Hin1II CATG 2 cut(s) 83, 125
HinfI GANTC 1 cut(s) 6
HpaII CCGG 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 152
Hpy188III TCNNGA 1 cut(s) 101
Hpy8I GTNNAC 1 cut(s) 152
HpyCH4III ACNGT 2 cut(s) 115, 158
HpyCH4V TGCA 1 cut(s) 47
HpyF10VI GCNNNNNNNGC 1 cut(s) 225
Hsp92II CATG 2 cut(s) 83, 125
KroI GCCGGC 1 cut(s) 57
KroNI GCCGGC 1 cut(s) 59
Kzo9I GATC 2 cut(s) 73, 130
LmnI GCTCC 1 cut(s) 170
Lsp1109I GCAGC 1 cut(s) 96
LweI GCATC 1 cut(s) 171
MaeI CTAG 2 cut(s) 95, 201
MaeIII GTNAC 2 cut(s) 182, 248
MalI GATC 2 cut(s) 75, 132
MboI GATC 2 cut(s) 73, 130
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 1 cut(s) 24
MroNI GCCGGC 1 cut(s) 57
MseI TTAA 1 cut(s) 213
MspI CCGG 1 cut(s) 58
MspR9I CCNGG 3 cut(s) 11, 135, 168
MvaI CCWGG 3 cut(s) 11, 135, 168
MwoI GCNNNNNNNGC 1 cut(s) 225
NaeI GCCGGC 1 cut(s) 59
NdeII GATC 2 cut(s) 73, 130
NgoMIV GCCGGC 1 cut(s) 57
NlaIII CATG 2 cut(s) 83, 125
NlaIV GGNNCC 3 cut(s) 132, 139, 172
NmuCI GTSAC 1 cut(s) 248
PdiI GCCGGC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 6
PfoI TCCNGGA 1 cut(s) 133
PkrI GCNGC 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 44
Psp6I CCWGG 3 cut(s) 9, 133, 166
PspFI CCCAGC 1 cut(s) 125
PspGI CCWGG 3 cut(s) 9, 133, 166
PspN4I GGNNCC 3 cut(s) 132, 139, 172
PsuI RGATCY 1 cut(s) 130
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
SacI GAGCTC 1 cut(s) 44
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 2 cut(s) 73, 130
ScrFI CCNGG 3 cut(s) 11, 135, 168
SduI GDGCHC 1 cut(s) 44
SetI ASST 2 cut(s) 44, 96
SfaNI GCATC 1 cut(s) 171
Sse9I AATT 1 cut(s) 24
SspMI CTAG 2 cut(s) 95, 201
SstI GAGCTC 1 cut(s) 44
StyD4I CCNGG 3 cut(s) 9, 133, 166
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 2 cut(s) 115, 158
TaqI TCGA 1 cut(s) 76
TasI AATT 1 cut(s) 24
TfiI GAWTC 1 cut(s) 6
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 3 cut(s) 181, 235, 253
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 1 cut(s) 84
Tsp45I GTSAC 1 cut(s) 248
TspRI CASTG 3 cut(s) 181, 235, 253
XmaJI CCTAGG 1 cut(s) 200
XspI CTAG 2 cut(s) 95, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.