Prupe.6G105000_v2.0.a1

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0018497
Physical Location & Seq
Forward (+)
7436094 .. 7436656
563 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G105000.1

Sequence Viewer

Length: 237 bp
ATGAAACTCTTGGCTCTTGCCCTAATTTTGATGGTGGCGAGCTCTTCCTTTGCCGCAGGGAAGGCGTCAAATGAACATGATGGATATTTGCATGGCCGGGAGCTAGGTGAGGAGGCGGAGGTCGGCCAAGGAGGGTATGATGGGTATCCTGGAAGCAGTGTCAACAACCACCATCACCTCCCGTGGCAGGACTTCAACAGCAAGGGTGGCAGTGATAACGATAATGGCGGTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.14

Weight (kDa)

5.04

Isoelectric Point (pI)

25.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018497)

Species Orthologous Gene IDs
malus_domestica MD03G1122100.v1.1 MD03G1122200.v1.1
prunus_persica Prupe.6G105000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0058381
rosa_multiflora Rmu_sc0001849.1_g000013
rosa_roxburghii Rroxscaffold_1G00022210 Rroxscaffold_1G00022740
rosa_rugosa Rorug05G0313500
rosa_samantha Rh5DG403000 Rh5DG407400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 54, 116, 228
AcoI YGGCCR 2 cut(s) 94, 124
AcyI GRCGYC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 187
AgsI TTSAA 1 cut(s) 196
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 2 cut(s) 42, 103
AluI AGCT 2 cut(s) 42, 103
Alw21I GWGCWC 1 cut(s) 44
AoxI GGCC 2 cut(s) 94, 124
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 2 cut(s) 119, 167
BanII GRGCYC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 44
BccI CCATC 4 cut(s) 25, 74, 134, 180
BciT130I CCWGG 1 cut(s) 150
BciVI GTATCC 1 cut(s) 156
BcnI CCSGG 1 cut(s) 98
BfaI CTAG 1 cut(s) 104
BfuI GTATCC 1 cut(s) 156
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
Bme1390I CCNGG 2 cut(s) 98, 150
BmrFI CCNGG 2 cut(s) 98, 150
BpuMI CCSGG 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 127, 182
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse8I GATNNNNATC 1 cut(s) 144
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 2 cut(s) 127, 182
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 187
BseRI GAGGAG 1 cut(s) 125
BshFI GGCC 2 cut(s) 96, 126
BsiHKAI GWGCWC 1 cut(s) 44
BsiSI CCGG 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 187
BsnI GGCC 2 cut(s) 96, 126
Bsp1286I GDGCHC 1 cut(s) 44
BspACI CCGC 3 cut(s) 54, 116, 228
BspANI GGCC 2 cut(s) 96, 126
BspQI GCTCTTC 1 cut(s) 49
BssECI CCNNGG 2 cut(s) 127, 182
BssNI GRCGYC 1 cut(s) 65
BssT1I CCWWGG 1 cut(s) 127
Bst2UI CCWGG 1 cut(s) 150
Bst6I CTCTTC 1 cut(s) 49
BstACI GRCGYC 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 40
BstDSI CCRYGG 1 cut(s) 182
BstMWI GCNNNNNNNGC 2 cut(s) 62, 207
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 2 cut(s) 96, 148
BsuI GTATCC 1 cut(s) 156
BsuRI GGCC 2 cut(s) 96, 126
BtgI CCRYGG 1 cut(s) 182
BtsI GCAGTG 2 cut(s) 163, 217
BtsIMutI CAGTG 2 cut(s) 163, 217
Cac8I GCNNGC 1 cut(s) 40
CseI GACGC 1 cut(s) 54
CviAII CATG 2 cut(s) 77, 92
CviJI RGCY 6 cut(s) 14, 42, 96, 103, 126, 234
CviKI_1 RGCY 6 cut(s) 14, 42, 96, 103, 126, 234
EaeI YGGCCR 2 cut(s) 94, 124
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
EciI GGCGGA 1 cut(s) 131
Ecl136II GAGCTC 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 42
EcoICRI GAGCTC 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 127
EcoT38I GRGCYC 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 127
FaeI CATG 2 cut(s) 80, 95
FaiI YATR 3 cut(s) 78, 93, 138
FatI CATG 2 cut(s) 76, 91
Fnu4HI GCNGC 1 cut(s) 54
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 104
GluI GCNGC 1 cut(s) 54
HaeIII GGCC 2 cut(s) 96, 126
HapII CCGG 1 cut(s) 97
HgaI GACGC 1 cut(s) 54
Hin1I GRCGYC 1 cut(s) 65
Hin1II CATG 2 cut(s) 80, 95
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HpaII CCGG 1 cut(s) 97
HphI GGTGA 2 cut(s) 119, 167
Hpy166II GTNNAC 1 cut(s) 163
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 1 cut(s) 55
HpyCH4V TGCA 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 207
Hsp92I GRCGYC 1 cut(s) 65
Hsp92II CATG 2 cut(s) 80, 95
LguI GCTCTTC 1 cut(s) 49
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 5 cut(s) 42, 110, 135, 162, 173
MaeI CTAG 1 cut(s) 104
MboII GAAGA 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 1 cut(s) 24
MnlI CCTC 5 cut(s) 103, 106, 112, 125, 188
MspI CCGG 1 cut(s) 97
MspR9I CCNGG 2 cut(s) 98, 150
MvaI CCWGG 1 cut(s) 150
MwoI GCNNNNNNNGC 2 cut(s) 62, 207
NciI CCSGG 1 cut(s) 98
NlaIII CATG 2 cut(s) 80, 95
PciSI GCTCTTC 1 cut(s) 49
PfoI TCCNGGA 1 cut(s) 148
PkrI GCNGC 1 cut(s) 55
Psp124BI GAGCTC 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
SacI GAGCTC 1 cut(s) 44
SapI GCTCTTC 1 cut(s) 49
SatI GCNGC 1 cut(s) 54
ScrFI CCNGG 2 cut(s) 98, 150
SduI GDGCHC 1 cut(s) 44
SetI ASST 5 cut(s) 44, 105, 109, 123, 180
Sse9I AATT 1 cut(s) 24
SsiI CCGC 3 cut(s) 54, 116, 228
SspMI CTAG 1 cut(s) 104
SstI GAGCTC 1 cut(s) 44
StyD4I CCNGG 2 cut(s) 96, 148
StyI CCWWGG 1 cut(s) 127
TasI AATT 1 cut(s) 24
TauI GCSGC 1 cut(s) 56
TscAI CASTG 2 cut(s) 163, 217
TspDTI ATGAA 2 cut(s) 17, 87
TspRI CASTG 2 cut(s) 163, 217
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.