Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004914

Physical Location & Seq

Genomic Coordinates Reverse (-)

32684131 .. 32689694

Gene Structure 5564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1242000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2904 bp

ATGGCTAACAGGAATCTGGAGAAGTTGGCGTCCATTGACGCGCAGCTTCGGCTTCTGGTTCCGGCCAAAGTGAGCGAGGACGACAAGCTGGTGGAATACGATGCTCTGCTTTTGGATCGGTTTCTGGATATTCTCCAAGATTTACATGGAGAGGATCTCAGGGAAACGGTTCAAGCATGTTATGAGCTTTCTGCTGAGTATGAAGGAAAGCATGACCCGAAAAAGCTATCAGAGCTTGGAGATGTATTGACAAGTTTGGACCCAGGGGATTCTATTGTTGTTGCAAAATCCTTCGCCCACATGCTTAGCTTGGCCAACTTGGCTGAGGAGGTCCAGATTGCTTACCGCAGACGAAACAAGCTGAAAAAGGGTGACTTTGCAGATGAAAATTCTGCAACGACTGAATCAGACATTGAAGAAACTCTCAAGAGGCTTGTAGGGGATCTTAAAAAGTCCCCCCAAGAGGTTTTTGATGCTCTCAAGAATCAAACTGTAGATCTGGTCCTCACTGCTCATCCTACACAATCAGTTCGTAGATCCTTGCTTCAGAAGCACGGAAGGATTCGGAATTGTTTAACCCAGTTGTACGCGAAAGACATTACTCCTGATGATAAGCAGGAGATTGATGAGGCACTTCAGAGAGAGATCCAAGCTGCATTTCGTACGGATGAGATCCGAAGAACAGCTCCCACTCCACAAGATGAGATGAGAGCAGGGATGAGCTATTTCCATGAAACAATTTGGAAGGGTGTCCCAAAGTTTCTCCGTCGTGTGGATACAGCTTTGAAGAATATTGGGATTAATGAACGTGTTCCCCATAATGCCCCACTTATTCAGTTTTCATCTTGGATGGGTGGTGATCGTGATGGTAATCCAAGAGTAACTCCCGAGGTCACAAGGGATGTTTGCCTACTCGCTAGAATGATGGCTGCAAACTTGTACTATTCTCAGATAGAGGATCTTATGTTTGAGGCGTTTTTGTCTATGTGGCGCTGCAATGATGAACTCCGTGTTCGTGCAGATGTACTTCACAGGTCCACGAGGAGAGATGCAAAGCACTACATAGAATTTTGGAAGCAAGTTCCTCCAAATGAACCCTACCGTGTGATTCTCGGTGATTTAAGGGATAAGCTTTATCATACACGTGAACGTTCTCGTCAGTTGTTAGCCAGTGGGCACTCTGACATTCCGGAGGAGGCAACACTGATCAGTGTTGAGCAGTTCTTGGAACCTCTCGAACTCTGCTACAGATCACTCTGCTCTTGTGGTGACCGAGCAATTGCTGATGGATCACTTCTTGATTTCTTAAGGCAAGTGTCCACCTTTGGACTTTCACTTGTGAAGCTCGATATTAGGCAAGAATCTGACAGGCATACTGATGTGATAGACGCCATCACCAAGCATCTGGAAATTGGTTCCTATCGTGAGTGGTCTGAAGAACGCCGTCAGGAGTGGCTTTTATCTGAACTATGTGGCAAGCGCCCACTGTTTGGTCCTGATCTTCCAAAAACGGAAGAAATCTCTGATGTTTTGGACACATTACATGTGATATCAGAACTTCCATCTGATAACTTTGGAGCATACATCATCTCAATGGCGACTGCTCCATCTGATGTGCTCGCAGTTGAGCTCCTGCAACGTGAATGCCATGTGAAGAAACCACTAAGAGTCGTTCCACTGTTTGAGAAGCTTGCAGATCTGGAGGCTGCTCCTGCTGCTTTGTCACGGCTTTTCTCGATTGATTGGTATAGAGAGCGGATCAACGGAACGCAAGAAGTCATGATTGGGTACTCAGATTCTGGTAAAGATGCAGGGCGTTTCTCTGCAGCCTGGCAGTTATACAAGGCACAGGAGGAGCTTATCAACGTTGCTAAGAAATTTGGTGTGAAGCTAACTATGTTCCATGGTCGTGGTGGCACTGTTGGAAGGGGAGGTGGTCCCACCCATCTTGCTATATTGTCTCAACCACCAGATACAATTCATGGTTCACTCCGTGTCACTGTCCAAGGTGAAGTTATTGAGCAGTCGTTTGGAGAGGAGCTCTTGTGTTTTAGAACACTCCAGCGTTTCACAGCTGCTACACTAGAGCACGGAATGCATATGCCAGTTTCACCAAAACCGGAATGGCGTGCACTTATGGACGAAATGGCAGTTGTATCTACAGAGGACTATCGCTCCATTGTTTTCCAGGAGCCCCGATTTGTCGAGTACTTCCGTCTTGCTACACCAGAGCTGGAGTATGGTCGGATGAACATTGGCAGTCGCCCCTCAAAGCGAAAACCTAGTGGTGGTATTGAGTCACTTCGTGCAATCCCATGGATTTTCGCATGGACACAAACAAGGTTCCATCTTCCTGTGTGGTTAGGCCTTGGAGCAGCCTTCAGACATGTCATTAAGAAGGACATTAAGAATCTTCATATGCTGCAAGAGATGTACAACCAATGGCCTTTCTTCAGGGTCACCATTGATTTGGTTGAAATGGTGTTTGCCAAGGGAAACCCCGGAATAGCTGCGTTATATGATAAACTCCTTGTTTCCGAAGACCTATGGTCATTTGGAGAGCGATTAAGGTCCAACTATGAAGAAACCAAGAACTTTCTCTTACAGATTGCTGGACACAAGGATCTTCTCGAAGGGGACCCGCACCTGAAGCAAAGACTCCGCCTGCGTGATTCATACATCACAACCCTCAACGTCTGCCAAGCATATACACTGAAAAGGATCCGTGACCCAAACTTCCATGTGACACTACGGCCACACATCTCAAAGGAAATCAGCGAATCAAACAAACCGGCTAATGAACTTGTGAAGCTGAACCCGACAAGCGAGTACGCGCCTGGTCTGGAGGACACCCTCATCTTGACAATGAAGGGTATTGCTGCCGGCTTACAGAACACCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0007154 GO:0007275 GO:0008150 GO:0008964 GO:0009267 GO:0009507 GO:0009536 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016043 GO:0016829 GO:0016830 GO:0016831 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051259 GO:0051262 GO:0051716 GO:0065003 GO:0071496 GO:0071840 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

968

Amino Acids

110.3

Weight (kDa)

6.0

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	34 - 967	0.0	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53310 AT1G53310 AT1G53310 AT3G14940 AT3G14940
fragaria_vesca	FvH4_3g18430 FvH4_3g18430 FvH4_3g18430 FvH4_3g18430 FvH4_3g18430
malus_domestica	MD03G1242000.v1.1 MD11G1261900.v1.1
prunus_persica	Prupe.4G166400_v2.0.a1 Prupe.4G166400_v2.0.a1 Prupe.4G166400_v2.0.a1 Prupe.4G166400_v2.0.a1 Prupe.4G166400_v2.0.a1
pyrus_communis	pycom03g18910 pycom11g23090
rosa_chinensis	RchiOBHm_Chr5g0031161
rosa_laevigata	RLG00000033287
rosa_multiflora	Rmu_sc0011257.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049100
rosa_rugosa	Rorug05G0122600 Rorug05G0122700
rosa_samantha	Rh5AG216300 Rh5BG215600 Rh5CG239100 Rh5DG220500
rosa_wichuraiana	Rw5G019770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1490
AccBSI	CCGCTC	1 cut(s)	1756
AccII	CGCG	3 cut(s)	41, 590, 2834
AccIII	TCCGGA	1 cut(s)	1189
AciI	CCGC	4 cut(s)	346, 1756, 2642, 2662
AclI	AACGTT	2 cut(s)	1150, 1866
AcoI	YGGCCR	3 cut(s)	63, 312, 2753
AcsI	RAATTY	3 cut(s)	388, 1067, 1877
AcuI	CTGAAG	6 cut(s)	530, 620, 1455, 2365, 2437, 2669
AcvI	CACGTG	1 cut(s)	1145
AcyI	GRCGYC	2 cut(s)	29, 1389
AdeI	CACNNNGTG	2 cut(s)	1994, 2306
AfaI	GTAC	8 cut(s)	587, 664, 941, 1026, 1790, 2210, 2435, 2831
AfiI	CCNNNNNNNGG	4 cut(s)	463, 772, 1490, 2288
AflII	CTTAAG	1 cut(s)	1306
AflIII	ACRYGT	4 cut(s)	808, 1142, 1543, 2386
AgeI	ACCGGT	1 cut(s)	2897
AgsI	TTSAA	4 cut(s)	173, 416, 787, 2477
AhdI	GACNNNNNGTC	1 cut(s)	2548
AjnI	CCWGG	4 cut(s)	262, 1829, 2187, 2836
AjuI	GAANNNNNNNTTGG	4 cut(s)	642, 674, 1767, 1799
Alw21I	GWGCWC	5 cut(s)	1620, 1632, 2043, 2091, 2134
Alw26I	GTCTC	1 cut(s)	1965
Alw44I	GTGCAC	1 cut(s)	2130
AlwNI	CAGNNNCTG	1 cut(s)	1799
Ama87I	CYCGRG	1 cut(s)	887
Aor13HI	TCCGGA	1 cut(s)	1189
AoxI	GGCC	5 cut(s)	63, 312, 2365, 2444, 2753
ApaLI	GTGCAC	1 cut(s)	2130
ApoI	RAATTY	3 cut(s)	388, 1067, 1877
AseI	ATTAAT	1 cut(s)	801
AsiGI	ACCGGT	1 cut(s)	2897
Asp700I	GAANNNNTTC	2 cut(s)	168, 810
AspLEI	GCGC	4 cut(s)	43, 993, 1482, 2836
AspS9I	GGNCC	8 cut(s)	259, 331, 502, 1035, 1493, 1937, 2571, 2638
AsuC2I	CCSGG	1 cut(s)	2502
AsuHPI	GGTGA	8 cut(s)	383, 869, 1127, 1280, 1387, 2021, 2103, 2452
AvaI	CYCGRG	1 cut(s)	887
AvaII	GGWCC	8 cut(s)	259, 331, 502, 1035, 1493, 1937, 2571, 2638
BaeGI	GKGCMC	2 cut(s)	1179, 2134
BalI	TGGCCA	1 cut(s)	314
BamHI	GGATCC	1 cut(s)	2721
BanII	GRGCYC	3 cut(s)	1632, 2043, 2196
BauI	CACGAG	1 cut(s)	1039
BbrPI	CACGTG	1 cut(s)	1145
BbsI	GAAGAC	1 cut(s)	2547
Bbv12I	GWGCWC	5 cut(s)	1620, 1632, 2043, 2091, 2134
BbvCI	CCTCAGC	1 cut(s)	324
BccI	CCATC	9 cut(s)	844, 860, 919, 1280, 1400, 1570, 1615, 1953, 2355
BceAI	ACGGC	3 cut(s)	1428, 1742, 2768
BciT130I	CCWGG	4 cut(s)	264, 1831, 2189, 2838
BciVI	GTATCC	1 cut(s)	769
BclI	TGATCA	1 cut(s)	1206
BcnI	CCSGG	1 cut(s)	2502
BcoDI	GTCTC	1 cut(s)	1965
BfaI	CTAG	3 cut(s)	918, 2084, 2283
BfmI	CTRYAG	4 cut(s)	492, 1246, 1824, 2160
BfoI	RGCGCY	2 cut(s)	994, 1483
BfrI	CTTAAG	1 cut(s)	1306
BfuI	GTATCC	1 cut(s)	769
BglI	GCCNNNNNGGC	1 cut(s)	320
BglII	AGATCT	2 cut(s)	496, 1696
BlpI	GCTNAGC	1 cut(s)	305
BmcAI	AGTACT	1 cut(s)	2210
Bme1390I	CCNGG	5 cut(s)	264, 1831, 2189, 2502, 2838
Bme18I	GGWCC	8 cut(s)	259, 331, 502, 1035, 1493, 1937, 2571, 2638
BmeRI	GACNNNNNGTC	1 cut(s)	2548
BmeT110I	CYCGRG	1 cut(s)	887
BmgT120I	GGNCC	8 cut(s)	259, 331, 502, 1035, 1493, 1937, 2571, 2638
BmrFI	CCNGG	5 cut(s)	264, 1831, 2189, 2502, 2838
BmrI	ACTGGG	1 cut(s)	574
BmsI	GCATC	5 cut(s)	91, 463, 1039, 1411, 1798
BmuI	ACTGGG	1 cut(s)	574
BpiI	GAAGAC	1 cut(s)	2547
BplI	GAGNNNNNCTC	4 cut(s)	141, 173, 2025, 2057
BpmI	CTGGAG	5 cut(s)	38, 1721, 2045, 2255, 2864
Bpu10I	CCTNAGC	1 cut(s)	324
Bpu1102I	GCTNAGC	1 cut(s)	305
BpuEI	CTTGAG	2 cut(s)	410, 464
BpuMI	CCSGG	1 cut(s)	2502
BsaAI	YACGTR	1 cut(s)	1145
BsaBI	GATNNNNATC	1 cut(s)	870
BsaHI	GRCGYC	2 cut(s)	29, 1389
BsaJI	CCNNGG	9 cut(s)	262, 263, 888, 1903, 2005, 2315, 2368, 2490, 2500
BsaWI	WCCGGW	3 cut(s)	1189, 2119, 2897
BsaXI	ACNNNNNCTCC	4 cut(s)	2030, 2060, 2159, 2189
Bsc4I	CCNNNNNNNGG	4 cut(s)	463, 772, 1490, 2288
Bse118I	RCCGGY	3 cut(s)	2791, 2882, 2897
Bse1I	ACTGG	3 cut(s)	580, 1170, 2105
Bse3DI	GCAATG	1 cut(s)	1003
Bse8I	GATNNNNATC	1 cut(s)	870
BseAI	TCCGGA	1 cut(s)	1189
BseBI	CCWGG	4 cut(s)	264, 1831, 2189, 2838
BseDI	CCNNGG	9 cut(s)	262, 263, 888, 1903, 2005, 2315, 2368, 2490, 2500
BseGI	GGATG	6 cut(s)	514, 673, 723, 855, 907, 2253
BseJI	GATNNNNATC	1 cut(s)	870
BseLI	CCNNNNNNNGG	4 cut(s)	463, 772, 1490, 2288
BseMI	GCAATG	1 cut(s)	1003
BseMII	CTCAG	5 cut(s)	172, 186, 315, 962, 1806
BseNI	ACTGG	3 cut(s)	580, 1170, 2105
BseRI	GAGGAG	5 cut(s)	341, 1057, 1208, 1868, 2051
BseSI	GKGCMC	2 cut(s)	1179, 2134
BsgI	GTGCAG	1 cut(s)	1038
Bsh1236I	CGCG	3 cut(s)	41, 590, 2834
BshFI	GGCC	5 cut(s)	65, 314, 2367, 2446, 2755
BshTI	ACCGGT	1 cut(s)	2897
BsiHKAI	GWGCWC	5 cut(s)	1620, 1632, 2043, 2091, 2134
BsiHKCI	CYCGRG	1 cut(s)	887
BsiSI	CCGG	7 cut(s)	62, 1190, 2120, 2502, 2792, 2883, 2898
BsiWI	CGTACG	1 cut(s)	662
BslFI	GGGAC	4 cut(s)	439, 737, 1923, 2651
BslI	CCNNNNNNNGG	4 cut(s)	463, 772, 1490, 2288
BsmAI	GTCTC	1 cut(s)	1965
BsmFI	GGGAC	4 cut(s)	439, 737, 1923, 2651
BsmI	GAATGC	2 cut(s)	1649, 2100
BsnI	GGCC	5 cut(s)	65, 314, 2367, 2446, 2755
BsoBI	CYCGRG	1 cut(s)	887
Bsp1286I	GDGCHC	7 cut(s)	1179, 1620, 1632, 2043, 2091, 2134, 2196
Bsp13I	TCCGGA	1 cut(s)	1189
Bsp1407I	TGTACA	1 cut(s)	2433
Bsp1720I	GCTNAGC	1 cut(s)	305
Bsp19I	CCATGG	2 cut(s)	1903, 2315
BspACI	CCGC	4 cut(s)	346, 1756, 2642, 2662
BspANI	GGCC	5 cut(s)	65, 314, 2367, 2446, 2755
BspCNI	CTCAG	5 cut(s)	171, 187, 316, 961, 1805
BspEI	TCCGGA	1 cut(s)	1189
BspFNI	CGCG	3 cut(s)	41, 590, 2834
BspHI	TCATGA	1 cut(s)	1779
BspMAI	CTGCAG	1 cut(s)	1828
BspTI	CTTAAG	1 cut(s)	1306
BsrBI	CCGCTC	1 cut(s)	1756
BsrDI	GCAATG	1 cut(s)	1003
BsrFI	RCCGGY	3 cut(s)	2791, 2882, 2897
BsrGI	TGTACA	1 cut(s)	2433
BsrI	ACTGG	3 cut(s)	580, 1170, 2105
BssAI	RCCGGY	3 cut(s)	2791, 2882, 2897
BssECI	CCNNGG	9 cut(s)	262, 263, 888, 1903, 2005, 2315, 2368, 2490, 2500
BssNI	GRCGYC	2 cut(s)	29, 1389
BssSI	CACGAG	1 cut(s)	1039
BssT1I	CCWWGG	5 cut(s)	1903, 2005, 2315, 2368, 2490
Bst2BI	CACGAG	1 cut(s)	1039
Bst2UI	CCWGG	4 cut(s)	264, 1831, 2189, 2838
Bst4CI	ACNGT	7 cut(s)	169, 493, 1103, 1488, 1680, 1921, 2002
BstACI	GRCGYC	2 cut(s)	29, 1389
BstAFI	CTTAAG	1 cut(s)	1306
BstAPI	GCANNNNNTGC	1 cut(s)	2095
BstAUI	TGTACA	1 cut(s)	2433
BstBAI	YACGTR	1 cut(s)	1145
BstC8I	GCNNGC	6 cut(s)	1478, 1620, 1692, 2130, 2666, 2884
BstDEI	CTNAG	8 cut(s)	158, 195, 305, 324, 948, 1664, 1792, 1872
BstDSI	CCRYGG	2 cut(s)	1903, 2315
BstEII	GGTNACC	2 cut(s)	1268, 2458
BstF5I	GGATG	6 cut(s)	514, 673, 723, 855, 907, 2253
BstFNI	CGCG	3 cut(s)	41, 590, 2834
BstH2I	RGCGCY	2 cut(s)	994, 1483
BstHHI	GCGC	4 cut(s)	43, 993, 1482, 2836
BstMAI	GTCTC	1 cut(s)	1965
BstMWI	GCNNNNNNNGC	8 cut(s)	49, 232, 320, 550, 1712, 1715, 2095, 2650
BstNI	CCWGG	4 cut(s)	264, 1831, 2189, 2838
BstNSI	RCATGY	4 cut(s)	180, 304, 1547, 2390
BstPI	GGTNACC	2 cut(s)	1268, 2458
BstSCI	CCNGG	5 cut(s)	262, 1829, 2187, 2500, 2836
BstSFI	CTRYAG	4 cut(s)	492, 1246, 1824, 2160
BstSLI	GKGCMC	2 cut(s)	1179, 2134
BstUI	CGCG	3 cut(s)	41, 590, 2834
BstV2I	GAAGAC	1 cut(s)	2547
BstXI	CCANNNNNNTGG	3 cut(s)	1405, 1910, 2470
BsuI	GTATCC	1 cut(s)	769
BsuRI	GGCC	5 cut(s)	65, 314, 2367, 2446, 2755
BtgI	CCRYGG	2 cut(s)	1903, 2315
BtsCI	GGATG	6 cut(s)	514, 673, 723, 855, 907, 2253
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	9 cut(s)	507, 1177, 1202, 1216, 1484, 1676, 1917, 1998, 2711
Cac8I	GCNNGC	6 cut(s)	1478, 1620, 1692, 2130, 2666, 2884
CaiI	CAGNNNCTG	1 cut(s)	1799
CciI	TCATGA	1 cut(s)	1779
CfoI	GCGC	4 cut(s)	43, 993, 1482, 2836
Cfr10I	RCCGGY	3 cut(s)	2791, 2882, 2897
Cfr13I	GGNCC	8 cut(s)	259, 331, 502, 1035, 1493, 1937, 2571, 2638
CseI	GACGC	3 cut(s)	18, 47, 1397
Csp6I	GTAC	8 cut(s)	586, 663, 940, 1025, 1789, 2209, 2434, 2830
CspAI	ACCGGT	1 cut(s)	2897
CspCI	CAANNNNNGTGG	2 cut(s)	1930, 1965
CviQI	GTAC	8 cut(s)	586, 663, 940, 1025, 1789, 2209, 2434, 2830
DdeI	CTNAG	8 cut(s)	158, 195, 305, 324, 948, 1664, 1792, 1872
DraIII	CACNNNGTG	2 cut(s)	1994, 2306
DriI	GACNNNNNGTC	1 cut(s)	2548
EaeI	YGGCCR	3 cut(s)	63, 312, 2753
Eam1105I	GACNNNNNGTC	1 cut(s)	2548
EciI	GGCGGA	1 cut(s)	2651
Ecl136II	GAGCTC	2 cut(s)	1630, 2041
Eco130I	CCWWGG	5 cut(s)	1903, 2005, 2315, 2368, 2490
Eco147I	AGGCCT	1 cut(s)	2367
Eco24I	GRGCYC	3 cut(s)	1632, 2043, 2196
Eco32I	GATATC	1 cut(s)	1551
Eco47I	GGWCC	8 cut(s)	259, 331, 502, 1035, 1493, 1937, 2571, 2638
Eco53kI	GAGCTC	2 cut(s)	1630, 2041
Eco57I	CTGAAG	6 cut(s)	530, 620, 1455, 2365, 2437, 2669
Eco72I	CACGTG	1 cut(s)	1145
Eco88I	CYCGRG	1 cut(s)	887
Eco91I	GGTNACC	2 cut(s)	1268, 2458
EcoICRI	GAGCTC	2 cut(s)	1630, 2041
EcoO109I	RGGNCCY	1 cut(s)	2638
EcoO65I	GGTNACC	2 cut(s)	1268, 2458
EcoRII	CCWGG	4 cut(s)	262, 1829, 2187, 2836
EcoRV	GATATC	1 cut(s)	1551
EcoT14I	CCWWGG	5 cut(s)	1903, 2005, 2315, 2368, 2490
EcoT22I	ATGCAT	1 cut(s)	2100
EcoT38I	GRGCYC	3 cut(s)	1632, 2043, 2196
ErhI	CCWWGG	5 cut(s)	1903, 2005, 2315, 2368, 2490
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FaqI	GGGAC	4 cut(s)	439, 737, 1923, 2651
FauI	CCCGC	1 cut(s)	2649
FauNDI	CATATG	2 cut(s)	2100, 2418
FbaI	TGATCA	1 cut(s)	1206
FokI	GGATG	6 cut(s)	501, 680, 730, 862, 914, 2260
FriOI	GRGCYC	3 cut(s)	1632, 2043, 2196
FspBI	CTAG	3 cut(s)	918, 2084, 2283
GlaI	GCGC	4 cut(s)	42, 992, 1481, 2835
GsuI	CTGGAG	5 cut(s)	38, 1721, 2045, 2255, 2864
HaeII	RGCGCY	2 cut(s)	994, 1483
HaeIII	GGCC	5 cut(s)	65, 314, 2367, 2446, 2755
HapII	CCGG	7 cut(s)	62, 1190, 2120, 2502, 2792, 2883, 2898
HgaI	GACGC	3 cut(s)	18, 47, 1397
HhaI	GCGC	4 cut(s)	43, 993, 1482, 2836
Hin1I	GRCGYC	2 cut(s)	29, 1389
Hin6I	GCGC	4 cut(s)	41, 991, 1480, 2834
HinP1I	GCGC	4 cut(s)	41, 991, 1480, 2834
HindIII	AAGCTT	2 cut(s)	1130, 1688
HpaII	CCGG	7 cut(s)	62, 1190, 2120, 2502, 2792, 2883, 2898
HphI	GGTGA	8 cut(s)	383, 869, 1127, 1280, 1387, 2021, 2103, 2452
Hpy166II	GTNNAC	5 cut(s)	1038, 1148, 1320, 1988, 2132
Hpy8I	GTNNAC	5 cut(s)	1038, 1148, 1320, 1988, 2132
Hpy99I	CGWCG	1 cut(s)	771
HpyAV	CCTTC	9 cut(s)	197, 301, 552, 739, 1920, 2389, 2392, 2627, 2863
HpyCH4III	ACNGT	7 cut(s)	169, 493, 1103, 1488, 1680, 1921, 2002
HpyCH4IV	ACGT	6 cut(s)	808, 1144, 1150, 1639, 1866, 2694
HpyF10VI	GCNNNNNNNGC	8 cut(s)	49, 232, 320, 550, 1712, 1715, 2095, 2650
HpyF3I	CTNAG	8 cut(s)	158, 195, 305, 324, 948, 1664, 1792, 1872
HpySE526I	ACGT	6 cut(s)	808, 1144, 1150, 1639, 1866, 2694
Hsp92I	GRCGYC	2 cut(s)	29, 1389
HspAI	GCGC	4 cut(s)	41, 991, 1480, 2834
KflI	GGGWCCC	1 cut(s)	2638
Kpn2I	TCCGGA	1 cut(s)	1189
KroI	GCCGGC	1 cut(s)	2882
KroNI	GCCGGC	1 cut(s)	2884
Ksp22I	TGATCA	1 cut(s)	1206
LweI	GCATC	5 cut(s)	91, 463, 1039, 1411, 1798
MaeI	CTAG	3 cut(s)	918, 2084, 2283
MaeII	ACGT	6 cut(s)	808, 1144, 1150, 1639, 1866, 2694
MbiI	CCGCTC	1 cut(s)	1756
MfeI	CAATTG	1 cut(s)	1278
MhlI	GDGCHC	7 cut(s)	1179, 1620, 1632, 2043, 2091, 2134, 2196
MlsI	TGGCCA	1 cut(s)	314
MluCI	AATT	8 cut(s)	388, 568, 738, 1067, 1278, 1410, 1877, 1977
MluNI	TGGCCA	1 cut(s)	314
MlyI	GAGTC	3 cut(s)	1677, 2306, 2652
MmeI	TCCRAC	3 cut(s)	1903, 2225, 2598
Mox20I	TGGCCA	1 cut(s)	314
Mph1103I	ATGCAT	1 cut(s)	2100
MroI	TCCGGA	1 cut(s)	1189
MroNI	GCCGGC	1 cut(s)	2882
MroXI	GAANNNNTTC	2 cut(s)	168, 810
MscI	TGGCCA	1 cut(s)	314
MseI	TTAA	9 cut(s)	447, 575, 801, 1121, 1307, 2394, 2406, 2567, 2902
MslI	CAYNNNNRTG	4 cut(s)	1143, 1377, 1592, 1908
Msp20I	TGGCCA	1 cut(s)	314
MspA1I	CMGCKG	1 cut(s)	2075
MspCI	CTTAAG	1 cut(s)	1306
MspI	CCGG	7 cut(s)	62, 1190, 2120, 2502, 2792, 2883, 2898
MspR9I	CCNGG	5 cut(s)	264, 1831, 2189, 2502, 2838
MunI	CAATTG	1 cut(s)	1278
Mva1269I	GAATGC	2 cut(s)	1649, 2100
MvaI	CCWGG	4 cut(s)	264, 1831, 2189, 2838
MvnI	CGCG	3 cut(s)	41, 590, 2834
MwoI	GCNNNNNNNGC	8 cut(s)	49, 232, 320, 550, 1712, 1715, 2095, 2650
NaeI	GCCGGC	1 cut(s)	2884
NciI	CCSGG	1 cut(s)	2502
NcoI	CCATGG	2 cut(s)	1903, 2315
NdeI	CATATG	2 cut(s)	2100, 2418
NgoMIV	GCCGGC	1 cut(s)	2882
NmuCI	GTSAC	9 cut(s)	371, 892, 1268, 1722, 1996, 2298, 2458, 2726, 2743
NsiI	ATGCAT	1 cut(s)	2100
NspI	RCATGY	4 cut(s)	180, 304, 1547, 2390
PagI	TCATGA	1 cut(s)	1779
PasI	CCCWGGG	1 cut(s)	263
PceI	AGGCCT	1 cut(s)	2367
PciI	ACATGT	2 cut(s)	1543, 2386
PctI	GAATGC	2 cut(s)	1649, 2100
PdiI	GCCGGC	1 cut(s)	2884
PdmI	GAANNNNTTC	2 cut(s)	168, 810
Pfl23II	CGTACG	1 cut(s)	662
PflMI	CCANNNNNTGG	1 cut(s)	1490
PfoI	TCCNGGA	1 cut(s)	2187
PinAI	ACCGGT	1 cut(s)	2897
PleI	GAGTC	3 cut(s)	1676, 2305, 2652
PmaCI	CACGTG	1 cut(s)	1145
PmlI	CACGTG	1 cut(s)	1145
PpsI	GAGTC	3 cut(s)	1676, 2305, 2652
Ppu21I	YACGTR	1 cut(s)	1145
PpuMI	RGGWCCY	1 cut(s)	2638
PscI	ACATGT	2 cut(s)	1543, 2386
PshBI	ATTAAT	1 cut(s)	801
Psp124BI	GAGCTC	2 cut(s)	1632, 2043
Psp1406I	AACGTT	2 cut(s)	1150, 1866
Psp5II	RGGWCCY	1 cut(s)	2638
Psp6I	CCWGG	4 cut(s)	262, 1829, 2187, 2836
PspCI	CACGTG	1 cut(s)	1145
PspEI	GGTNACC	2 cut(s)	1268, 2458
PspGI	CCWGG	4 cut(s)	262, 1829, 2187, 2836
PspLI	CGTACG	1 cut(s)	662
PspPI	GGNCC	8 cut(s)	259, 331, 502, 1035, 1493, 1937, 2571, 2638
PspPPI	RGGWCCY	1 cut(s)	2638
PstI	CTGCAG	1 cut(s)	1828
PstNI	CAGNNNCTG	1 cut(s)	1799
PvuII	CAGCTG	1 cut(s)	2075
RsaI	GTAC	8 cut(s)	587, 664, 941, 1026, 1790, 2210, 2435, 2831
RsaNI	GTAC	8 cut(s)	586, 663, 940, 1025, 1789, 2209, 2434, 2830
RseI	CAYNNNNRTG	4 cut(s)	1143, 1377, 1592, 1908
SacI	GAGCTC	2 cut(s)	1632, 2043
SaqAI	TTAA	9 cut(s)	447, 575, 801, 1121, 1307, 2394, 2406, 2567, 2902
Sau96I	GGNCC	8 cut(s)	259, 331, 502, 1035, 1493, 1937, 2571, 2638
ScaI	AGTACT	1 cut(s)	2210
SchI	GAGTC	3 cut(s)	1677, 2306, 2652
ScrFI	CCNGG	5 cut(s)	264, 1831, 2189, 2502, 2838
SduI	GDGCHC	7 cut(s)	1179, 1620, 1632, 2043, 2091, 2134, 2196
SfaNI	GCATC	5 cut(s)	91, 463, 1039, 1411, 1798
SfcI	CTRYAG	4 cut(s)	492, 1246, 1824, 2160
SinI	GGWCC	8 cut(s)	259, 331, 502, 1035, 1493, 1937, 2571, 2638
SmiMI	CAYNNNNRTG	4 cut(s)	1143, 1377, 1592, 1908
SmlI	CTYRAG	3 cut(s)	425, 479, 1306
SmoI	CTYRAG	3 cut(s)	425, 479, 1306
Sse9I	AATT	8 cut(s)	388, 568, 738, 1067, 1278, 1410, 1877, 1977
SseBI	AGGCCT	1 cut(s)	2367
SsiI	CCGC	4 cut(s)	346, 1756, 2642, 2662
SspI	AATATT	1 cut(s)	793
SspMI	CTAG	3 cut(s)	918, 2084, 2283
SstI	GAGCTC	2 cut(s)	1632, 2043
StuI	AGGCCT	1 cut(s)	2367
StyD4I	CCNGG	5 cut(s)	262, 1829, 2187, 2500, 2836
StyI	CCWWGG	5 cut(s)	1903, 2005, 2315, 2368, 2490
TaaI	ACNGT	7 cut(s)	169, 493, 1103, 1488, 1680, 1921, 2002
TaiI	ACGT	6 cut(s)	811, 1147, 1153, 1642, 1869, 2697
TaqI	TCGA	5 cut(s)	1236, 1347, 1736, 2205, 2631
TaqII	GACCGA	1 cut(s)	1287
TasI	AATT	8 cut(s)	388, 568, 738, 1067, 1278, 1410, 1877, 1977
TatI	WGTACW	4 cut(s)	939, 1024, 2208, 2433
Tru1I	TTAA	9 cut(s)	447, 575, 801, 1121, 1307, 2394, 2406, 2567, 2902
Tru9I	TTAA	9 cut(s)	447, 575, 801, 1121, 1307, 2394, 2406, 2567, 2902
TscAI	CASTG	9 cut(s)	514, 1177, 1209, 1216, 1491, 1683, 1924, 2005, 2718
TseFI	GTSAC	9 cut(s)	371, 892, 1268, 1722, 1996, 2298, 2458, 2726, 2743
Tsp45I	GTSAC	9 cut(s)	371, 892, 1268, 1722, 1996, 2298, 2458, 2726, 2743
TspRI	CASTG	9 cut(s)	514, 1177, 1209, 1216, 1491, 1683, 1924, 2005, 2718
Van91I	CCANNNNNTGG	1 cut(s)	1490
Vha464I	CTTAAG	1 cut(s)	1306
VneI	GTGCAC	1 cut(s)	2130
VpaK11BI	GGWCC	8 cut(s)	259, 331, 502, 1035, 1493, 1937, 2571, 2638
VspI	ATTAAT	1 cut(s)	801
XapI	RAATTY	3 cut(s)	388, 1067, 1877
XceI	RCATGY	4 cut(s)	180, 304, 1547, 2390
XcmI	CCANNNNNNNNNTGG	3 cut(s)	143, 1910, 2121
XmnI	GAANNNNTTC	2 cut(s)	168, 810
XspI	CTAG	3 cut(s)	918, 2084, 2283
ZrmI	AGTACT	1 cut(s)	2210
Zsp2I	ATGCAT	1 cut(s)	2100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.