Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004914

Physical Location & Seq

Genomic Coordinates Reverse (-)

10847479 .. 10850273

Gene Structure 2795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0122700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGTTACTGTCGATCAGCTTCAGGGTGACAATTTCTCGTCGCAATGCGGACCTTTGTCTTTGAAAGGTGTTAGGATCCCTCTTTACCGATTTGGTTGCAATTCTGTTTTGGATGATGGTTCTGTTGGAGGGGATGCTTGTTTTTTAGAAGAGGATGAAGAACAGAGTTTATTGGATTCGATTCTTCTTGCCCAGTGGGAGGATCGGATGTGGAAAGGTTTATTCAGATACGATGTGACAACCTCTGAAATTAAGGTTATTGATGGGAGGAGAAAGTTTATTGCACAGTTTAATGAAGGATGCGGTATGGATTGTATACCCAAACTGGGCAAGGGTAAACTTGGCCGCGGAGATGTGTTTGAGTTTAGTTGGATGGATCGCCAGGAGGAGTTGCTATTTTCTGTTGCAAGGGGTGAACAGTCTAACCCGGAGCTTGTTCTTGAGGCTGATGCCCCTGATTCTGCCTTATTGATTACTGTAAATGCGTCCCCTGTCGAATATGGCCATGTCTTCCTGATACCATATTGCTCGAACATTCTTTACCAGTTCCTGGATGCAAAAAACTTGGAATTGGCTCTATGCGTTGCTGTTGAAGTAAAGAACTACTCTTTTCGCCTGTTCTATGACTATTCACCCAGTGCTTCTCATATATATTTCCAGGCTTGCTATTTTCAAATCCCTTTACCTGTCGAGTTTATGCCTTCTGATACATTCTTCGTTGATGGCCAAAAGGGGATGCTTATTTCTTCTGTTGCAGACTACCCCATTAAGACCCTTGTGTTTGAGAGCAACCACTTTAAGTTGATGTTGGAGGTTGTTGCTGAGATATGCTCTACTTTACGGGGAAAGCTCATACTGTATAATCTGCTGATATCGGATCATGGCAGAAAGATCTTTTTGTTTCTTCAGCAACAGACATCAAAAACCTCTTGCACCCTTTCAGCTTGGGAATGTGGGGGCTACTTCTTGTTCAAATCAAGGTCTGCATTCGATCAAGCTGCTGAGATGACTTTGCTAAAACAGCTAAGTACTGTCTCCATTGATGAGGAAGGTTTCCAAGCAGTTAAGCTGCTGTGTAGCAGCATTGCAAGCCAGTTTACTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0007154 GO:0007275 GO:0008150 GO:0008964 GO:0009267 GO:0009507 GO:0009536 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016043 GO:0016829 GO:0016830 GO:0016831 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051259 GO:0051262 GO:0051716 GO:0065003 GO:0071496 GO:0071840 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

368

Amino Acids

41.36

Weight (kDa)

4.73

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPGP1_N	PF26217	58 - 222	1.7e-46	GDPGP1-like, N-terminal domain
GDPGP1_C	PF26216	229 - 364	1.2e-39	GDPGP1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004914)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53310 AT1G53310 AT1G53310 AT3G14940 AT3G14940
fragaria_vesca	FvH4_3g18430 FvH4_3g18430 FvH4_3g18430 FvH4_3g18430 FvH4_3g18430
malus_domestica	MD03G1242000.v1.1 MD11G1261900.v1.1
prunus_persica	Prupe.4G166400_v2.0.a1 Prupe.4G166400_v2.0.a1 Prupe.4G166400_v2.0.a1 Prupe.4G166400_v2.0.a1 Prupe.4G166400_v2.0.a1
pyrus_communis	pycom03g18910 pycom11g23090
rosa_chinensis	RchiOBHm_Chr5g0031161
rosa_laevigata	RLG00000033287
rosa_multiflora	Rmu_sc0011257.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049100
rosa_rugosa	Rorug05G0122600 Rorug05G0122700
rosa_samantha	Rh5AG216300 Rh5BG215600 Rh5CG239100 Rh5DG220500
rosa_wichuraiana	Rw5G019770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	550
AccI	GTMKAC	1 cut(s)	316
AccII	CGCG	1 cut(s)	348
AciI	CCGC	4 cut(s)	48, 303, 346, 348
AclWI	GGATC	5 cut(s)	70, 83, 210, 384, 885
AcoI	YGGCCR	3 cut(s)	343, 502, 724
AcuI	CTGAAG	2 cut(s)	5, 890
AdeI	CACNNNGTG	1 cut(s)	638
AfaI	GTAC	1 cut(s)	1030
AfiI	CCNNNNNNNGG	3 cut(s)	199, 326, 550
AgsI	TTSAA	4 cut(s)	64, 593, 674, 973
AjnI	CCWGG	3 cut(s)	381, 549, 657
AluBI	AGCT	7 cut(s)	19, 433, 850, 944, 998, 1024, 1069
AluI	AGCT	7 cut(s)	19, 433, 850, 944, 998, 1024, 1069
Alw26I	GTCTC	1 cut(s)	1039
AlwI	GGATC	5 cut(s)	70, 83, 210, 384, 885
AlwNI	CAGNNNCTG	1 cut(s)	550
AoxI	GGCC	3 cut(s)	343, 502, 724
ApeKI	GCWGC	3 cut(s)	998, 1069, 1080
AspS9I	GGNCC	1 cut(s)	50
AsuC2I	CCSGG	1 cut(s)	428
AsuHPI	GGTGA	3 cut(s)	38, 425, 624
AvaII	GGWCC	1 cut(s)	50
BalI	TGGCCA	2 cut(s)	504, 726
BamHI	GGATCC	1 cut(s)	75
BbsI	GAAGAC	1 cut(s)	502
BbvI	GCAGC	3 cut(s)	985, 1056, 1092
BccI	CCATC	4 cut(s)	110, 257, 367, 716
BcgI	CGANNNNNNTGC	4 cut(s)	78, 112, 980, 1014
BciT130I	CCWGG	3 cut(s)	383, 551, 659
BcnI	CCSGG	1 cut(s)	428
BcoDI	GTCTC	1 cut(s)	1039
BglII	AGATCT	1 cut(s)	891
BisI	GCNGC	4 cut(s)	346, 999, 1070, 1081
BlsI	GCNGC	4 cut(s)	347, 1000, 1071, 1082
BmcAI	AGTACT	1 cut(s)	1030
Bme1390I	CCNGG	4 cut(s)	383, 428, 551, 659
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	77
BmrFI	CCNGG	4 cut(s)	383, 428, 551, 659
BmrI	ACTGGG	3 cut(s)	187, 335, 630
BmsI	GCATC	5 cut(s)	124, 290, 439, 544, 726
BmuI	ACTGGG	3 cut(s)	187, 335, 630
BoxI	GACNNNNGTC	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	502
BplI	GAGNNNNNCTC	2 cut(s)	815, 847
BpuEI	CTTGAG	1 cut(s)	461
BpuMI	CCSGG	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	3 cut(s)	199, 326, 550
Bse1I	ACTGG	5 cut(s)	193, 330, 544, 636, 1093
Bse3DI	GCAATG	2 cut(s)	50, 1083
BseBI	CCWGG	3 cut(s)	383, 551, 659
BseDI	CCNNGG	1 cut(s)	346
BseGI	GGATG	8 cut(s)	118, 139, 160, 213, 305, 378, 559, 741
BseLI	CCNNNNNNNGG	3 cut(s)	199, 326, 550
BseMI	GCAATG	2 cut(s)	50, 1083
BseMII	CTCAG	2 cut(s)	813, 993
BseNI	ACTGG	5 cut(s)	193, 330, 544, 636, 1093
BseRI	GAGGAG	2 cut(s)	283, 401
BseXI	GCAGC	3 cut(s)	985, 1056, 1092
Bsh1236I	CGCG	1 cut(s)	348
BshFI	GGCC	3 cut(s)	345, 504, 726
BsiSI	CCGG	1 cut(s)	428
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	3 cut(s)	199, 326, 550
BsmAI	GTCTC	1 cut(s)	1039
BsmFI	GGGAC	1 cut(s)	472
BsmI	GAATGC	1 cut(s)	986
BsnI	GGCC	3 cut(s)	345, 504, 726
Bsp143I	GATC	7 cut(s)	13, 75, 202, 376, 877, 891, 991
BspACI	CCGC	4 cut(s)	48, 303, 346, 348
BspANI	GGCC	3 cut(s)	345, 504, 726
BspCNI	CTCAG	2 cut(s)	814, 994
BspFNI	CGCG	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	77
BspPI	GGATC	5 cut(s)	70, 83, 210, 384, 885
BsrDI	GCAATG	2 cut(s)	50, 1083
BsrI	ACTGG	5 cut(s)	193, 330, 544, 636, 1093
BssECI	CCNNGG	1 cut(s)	346
BssMI	GATC	7 cut(s)	13, 75, 202, 376, 877, 891, 991
BssNAI	GTATAC	1 cut(s)	317
Bst1107I	GTATAC	1 cut(s)	317
Bst2UI	CCWGG	3 cut(s)	383, 551, 659
Bst4CI	ACNGT	6 cut(s)	10, 288, 420, 478, 858, 1033
Bst6I	CTCTTC	1 cut(s)	144
BstC8I	GCNNGC	2 cut(s)	664, 1090
BstDEI	CTNAG	3 cut(s)	822, 1002, 1025
BstDSI	CCRYGG	1 cut(s)	346
BstF5I	GGATG	8 cut(s)	118, 139, 160, 213, 305, 378, 559, 741
BstFNI	CGCG	1 cut(s)	348
BstKTI	GATC	7 cut(s)	16, 78, 205, 379, 880, 894, 994
BstMAI	GTCTC	1 cut(s)	1039
BstMBI	GATC	7 cut(s)	13, 75, 202, 376, 877, 891, 991
BstMWI	GCNNNNNNNGC	2 cut(s)	1021, 1089
BstNI	CCWGG	3 cut(s)	383, 551, 659
BstPAI	GACNNNNGTC	1 cut(s)	55
BstSCI	CCNGG	4 cut(s)	381, 426, 549, 657
BstUI	CGCG	1 cut(s)	348
BstV1I	GCAGC	3 cut(s)	985, 1056, 1092
BstV2I	GAAGAC	1 cut(s)	502
BstX2I	RGATCY	2 cut(s)	75, 891
BstYI	RGATCY	2 cut(s)	75, 891
BstZ17I	GTATAC	1 cut(s)	317
BsuRI	GGCC	3 cut(s)	345, 504, 726
BtgI	CCRYGG	1 cut(s)	346
BtsCI	GGATG	8 cut(s)	118, 139, 160, 213, 305, 378, 559, 741
BtsIMutI	CAGTG	2 cut(s)	200, 643
Cac8I	GCNNGC	2 cut(s)	664, 1090
CaiI	CAGNNNCTG	1 cut(s)	550
Cfr13I	GGNCC	1 cut(s)	50
Cfr42I	CCGCGG	1 cut(s)	349
CseI	GACGC	1 cut(s)	474
Csp6I	GTAC	1 cut(s)	1029
CviAII	CATG	2 cut(s)	506, 881
CviQI	GTAC	1 cut(s)	1029
DdeI	CTNAG	3 cut(s)	822, 1002, 1025
DpnI	GATC	7 cut(s)	15, 77, 204, 378, 879, 893, 993
DpnII	GATC	7 cut(s)	13, 75, 202, 376, 877, 891, 991
DraIII	CACNNNGTG	1 cut(s)	638
EaeI	YGGCCR	3 cut(s)	343, 502, 724
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco32I	GATATC	1 cut(s)	873
Eco47I	GGWCC	1 cut(s)	50
Eco57I	CTGAAG	2 cut(s)	5, 890
EcoRII	CCWGG	3 cut(s)	381, 549, 657
EcoRV	GATATC	1 cut(s)	873
FaeI	CATG	2 cut(s)	509, 884
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	2 cut(s)	505, 880
FblI	GTMKAC	1 cut(s)	316
Fnu4HI	GCNGC	4 cut(s)	346, 999, 1070, 1081
FokI	GGATG	8 cut(s)	125, 146, 167, 220, 312, 385, 566, 748
Fsp4HI	GCNGC	4 cut(s)	346, 999, 1070, 1081
GluI	GCNGC	4 cut(s)	346, 999, 1070, 1081
HaeIII	GGCC	3 cut(s)	345, 504, 726
HapII	CCGG	1 cut(s)	428
HgaI	GACGC	1 cut(s)	474
Hin1II	CATG	2 cut(s)	509, 884
HinfI	GANTC	3 cut(s)	176, 181, 458
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	3 cut(s)	38, 425, 624
Hpy166II	GTNNAC	4 cut(s)	317, 338, 416, 1098
Hpy188I	TCNGA	5 cut(s)	207, 227, 247, 706, 877
Hpy188III	TCNNGA	3 cut(s)	440, 514, 1104
Hpy8I	GTNNAC	4 cut(s)	317, 338, 416, 1098
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	3 cut(s)	290, 711, 1043
HpyCH4III	ACNGT	6 cut(s)	10, 288, 420, 478, 858, 1033
HpyCH4V	TGCA	8 cut(s)	99, 284, 407, 557, 755, 933, 986, 1088
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1021, 1089
HpyF3I	CTNAG	3 cut(s)	822, 1002, 1025
Hsp92II	CATG	2 cut(s)	509, 884
KspI	CCGCGG	1 cut(s)	349
Kzo9I	GATC	7 cut(s)	13, 75, 202, 376, 877, 891, 991
LmnI	GCTCC	1 cut(s)	430
Lsp1109I	GCAGC	3 cut(s)	985, 1056, 1092
LweI	GCATC	5 cut(s)	124, 290, 439, 544, 726
MaeIII	GTNAC	3 cut(s)	4, 26, 235
MalI	GATC	7 cut(s)	15, 77, 204, 378, 879, 893, 993
MboI	GATC	7 cut(s)	13, 75, 202, 376, 877, 891, 991
MboII	GAAGA	7 cut(s)	161, 170, 176, 502, 706, 738, 896
MflI	RGATCY	2 cut(s)	75, 891
MlsI	TGGCCA	2 cut(s)	504, 726
MluCI	AATT	4 cut(s)	31, 100, 249, 569
MluNI	TGGCCA	2 cut(s)	504, 726
MmeI	TCCRAC	3 cut(s)	106, 350, 789
Mox20I	TGGCCA	2 cut(s)	504, 726
MscI	TGGCCA	2 cut(s)	504, 726
MseI	TTAA	5 cut(s)	252, 291, 768, 798, 1065
Msp20I	TGGCCA	2 cut(s)	504, 726
MspA1I	CMGCKG	1 cut(s)	348
MspI	CCGG	1 cut(s)	428
MspR9I	CCNGG	4 cut(s)	383, 428, 551, 659
Mva1269I	GAATGC	1 cut(s)	986
MvaI	CCWGG	3 cut(s)	383, 551, 659
MvnI	CGCG	1 cut(s)	348
MwoI	GCNNNNNNNGC	2 cut(s)	1021, 1089
NciI	CCSGG	1 cut(s)	428
NdeII	GATC	7 cut(s)	13, 75, 202, 376, 877, 891, 991
NlaIII	CATG	2 cut(s)	509, 884
NlaIV	GGNNCC	1 cut(s)	77
NmuCI	GTSAC	2 cut(s)	26, 235
PctI	GAATGC	1 cut(s)	986
PfeI	GAWTC	3 cut(s)	176, 181, 458
PflMI	CCANNNNNTGG	1 cut(s)	550
PfoI	TCCNGGA	1 cut(s)	549
PkrI	GCNGC	4 cut(s)	347, 1000, 1071, 1082
PshAI	GACNNNNGTC	1 cut(s)	55
Psp6I	CCWGG	3 cut(s)	381, 549, 657
PspGI	CCWGG	3 cut(s)	381, 549, 657
PspN4I	GGNNCC	1 cut(s)	77
PspPI	GGNCC	1 cut(s)	50
PsrI	GAACNNNNNNTAC	2 cut(s)	524, 556
PstNI	CAGNNNCTG	1 cut(s)	550
PsuI	RGATCY	2 cut(s)	75, 891
RsaI	GTAC	1 cut(s)	1030
RsaNI	GTAC	1 cut(s)	1029
SacII	CCGCGG	1 cut(s)	349
SaqAI	TTAA	5 cut(s)	252, 291, 768, 798, 1065
SatI	GCNGC	4 cut(s)	346, 999, 1070, 1081
Sau3AI	GATC	7 cut(s)	13, 75, 202, 376, 877, 891, 991
Sau96I	GGNCC	1 cut(s)	50
ScaI	AGTACT	1 cut(s)	1030
ScrFI	CCNGG	4 cut(s)	383, 428, 551, 659
SfaNI	GCATC	5 cut(s)	124, 290, 439, 544, 726
Sfr303I	CCGCGG	1 cut(s)	349
SgrBI	CCGCGG	1 cut(s)	349
SinI	GGWCC	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	4 cut(s)	31, 100, 249, 569
SsiI	CCGC	4 cut(s)	48, 303, 346, 348
StyD4I	CCNGG	4 cut(s)	381, 426, 549, 657
TaaI	ACNGT	6 cut(s)	10, 288, 420, 478, 858, 1033
TaqI	TCGA	6 cut(s)	12, 179, 495, 530, 690, 990
TasI	AATT	4 cut(s)	31, 100, 249, 569
TatI	WGTACW	1 cut(s)	1028
TauI	GCSGC	1 cut(s)	348
TfiI	GAWTC	3 cut(s)	176, 181, 458
Tru1I	TTAA	5 cut(s)	252, 291, 768, 798, 1065
Tru9I	TTAA	5 cut(s)	252, 291, 768, 798, 1065
TscAI	CASTG	2 cut(s)	200, 643
TseFI	GTSAC	2 cut(s)	26, 235
TseI	GCWGC	3 cut(s)	998, 1069, 1080
Tsp45I	GTSAC	2 cut(s)	26, 235
TspDTI	ATGAA	2 cut(s)	171, 309
TspRI	CASTG	2 cut(s)	200, 643
Van91I	CCANNNNNTGG	1 cut(s)	550
VpaK11BI	GGWCC	1 cut(s)	50
XmiI	GTMKAC	1 cut(s)	316
ZrmI	AGTACT	1 cut(s)	1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.