Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0017247

Physical Location & Seq

Genomic Coordinates Reverse (-)

35548524 .. 35551120

Gene Structure 2597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1272400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGATCGTTACTGGAGTGTCCTTTTCCTTCATTTTCGGGGTAGTAGTACATTGGAGGGCTTTAGCAATAATCGGAATTGTTCCCTGTGCTGTGATCATTTTCGGTCTCTTTTTCATTCCCGAGTCTCCAAGATGGTTGGCAAAGACAGGACGCCAGAAAGAGTTTGAAGTTGCACTGCAGAAACTTCGCGGCAGAGACGCTGACATATCTGATGAAGCAGCAGAAATCCAGGAGTATATCACAACTCTTGATCGGTTCCCTCAAGCCAAATTGCTCGATTTGTTTCAAAGCAGATACTTGCGCTCGGTCATTGTTGTCGTAACTGGCCTTGGTGCAGCCGTAATGGATAAAGCGGGAAGAAAGCCTCTAATTTTGGCTTCTGCATCAGGGTTGATACTTGGCTGTGTCCTCGTTGCCATTTCATTCTTTCTGAAGGTTCATGAATTGGCATTCGATGCAGCTCCCATATTTTCTGTAGCAGGCATATTGATCTTTATAGGATCTTTTTCAATCGGAATGGGAGCAGTTCCATGGGTTATAATGTCAGAGATATTCCCTATAAACATTAAAGGACAGGCCGGAAGCTTAACAACGCTAGTGAACTGGGTCGGTGCATGGCTGTGTTCCTACACCTTCAACTTTCTTATGAGTTGGAACTCCTATGGTACATTCCTTCTGTATGCAGTGATCAATGTTCTAGCTGTGTTGTTCGTGATTGCGGTTGTGCCTGAAACAAAGGGAAAAACCCTGGAACAAATCCAAGGAGAAATTAACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071702 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

260

Amino Acids

28.33

Weight (kDa)

7.69

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	13 - 106	1.8e-12	Sugar (and other) transporter
Sugar_tr	PF00083	102 - 254	1e-32	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24280 FvH4_2g24280
malus_domestica	MD03G1272400.v1.1
prunus_persica	Prupe.6G151200_v2.0.a1 Prupe.6G151200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0416101 RchiOBHm_Chr6g0292111
rosa_multiflora	Rmu_sc0021497.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175420
rosa_samantha	Rh4CG211700 Rh4DG198000 Rh6DG337200
rosa_wichuraiana	Rw0G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	539
AccII	CGCG	1 cut(s)	189
AciI	CCGC	3 cut(s)	189, 353, 719
AclWI	GGATC	1 cut(s)	508
AcuI	CTGAAG	1 cut(s)	452
AcyI	GRCGYC	1 cut(s)	151
AfaI	GTAC	2 cut(s)	48, 667
AgsI	TTSAA	4 cut(s)	167, 287, 510, 637
AjnI	CCWGG	2 cut(s)	228, 747
AluBI	AGCT	3 cut(s)	461, 585, 701
AluI	AGCT	3 cut(s)	461, 585, 701
Alw26I	GTCTC	3 cut(s)	110, 129, 189
AlwI	GGATC	1 cut(s)	508
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	2 cut(s)	325, 576
ApeKI	GCWGC	3 cut(s)	218, 335, 458
AspLEI	GCGC	1 cut(s)	303
AvaI	CYCGRG	1 cut(s)	119
BbvI	GCAGC	3 cut(s)	230, 347, 470
BccI	CCATC	1 cut(s)	126
BceAI	ACGGC	1 cut(s)	323
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BciT130I	CCWGG	2 cut(s)	230, 749
BclI	TGATCA	2 cut(s)	93, 687
BcoDI	GTCTC	3 cut(s)	110, 129, 189
BfaI	CTAG	2 cut(s)	596, 698
BfmI	CTRYAG	2 cut(s)	176, 474
BisI	GCNGC	4 cut(s)	190, 219, 336, 459
BlsI	GCNGC	4 cut(s)	191, 220, 337, 460
Bme1390I	CCNGG	2 cut(s)	230, 749
BmeT110I	CYCGRG	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	257
BmrFI	CCNGG	2 cut(s)	230, 749
BmrI	ACTGGG	1 cut(s)	613
BmsI	GCATC	2 cut(s)	392, 445
BmuI	ACTGGG	1 cut(s)	613
BpmI	CTGGAG	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	246
BsaHI	GRCGYC	1 cut(s)	151
BsaI	GGTCTC	1 cut(s)	110
BsaJI	CCNNGG	4 cut(s)	328, 530, 747, 760
Bse1I	ACTGG	3 cut(s)	16, 328, 608
BseBI	CCWGG	2 cut(s)	230, 749
BseDI	CCNNGG	4 cut(s)	328, 530, 747, 760
BseNI	ACTGG	3 cut(s)	16, 328, 608
BseXI	GCAGC	3 cut(s)	230, 347, 470
BsgI	GTGCAG	1 cut(s)	354
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	2 cut(s)	327, 578
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	579
BsmAI	GTCTC	3 cut(s)	110, 129, 189
BsmBI	CGTCTC	1 cut(s)	189
BsmI	GAATGC	1 cut(s)	449
BsnI	GGCC	2 cut(s)	327, 578
Bso31I	GGTCTC	1 cut(s)	110
BsoBI	CYCGRG	1 cut(s)	119
Bsp143I	GATC	6 cut(s)	3, 93, 250, 489, 500, 687
Bsp19I	CCATGG	1 cut(s)	530
BspACI	CCGC	3 cut(s)	189, 353, 719
BspANI	GGCC	2 cut(s)	327, 578
BspFNI	CGCG	1 cut(s)	189
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	257
BspMAI	CTGCAG	1 cut(s)	180
BspPI	GGATC	1 cut(s)	508
BspTNI	GGTCTC	1 cut(s)	110
BsrI	ACTGG	3 cut(s)	16, 328, 608
BssECI	CCNNGG	4 cut(s)	328, 530, 747, 760
BssMI	GATC	6 cut(s)	3, 93, 250, 489, 500, 687
BssNI	GRCGYC	1 cut(s)	151
BssT1I	CCWWGG	3 cut(s)	328, 530, 760
Bst2UI	CCWGG	2 cut(s)	230, 749
BstACI	GRCGYC	1 cut(s)	151
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstC8I	GCNNGC	1 cut(s)	481
BstDSI	CCRYGG	1 cut(s)	530
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	6 cut(s)	6, 96, 253, 492, 503, 690
BstMAI	GTCTC	3 cut(s)	110, 129, 189
BstMBI	GATC	6 cut(s)	3, 93, 250, 489, 500, 687
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstNI	CCWGG	2 cut(s)	230, 749
BstSCI	CCNGG	2 cut(s)	228, 747
BstSFI	CTRYAG	2 cut(s)	176, 474
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	3 cut(s)	230, 347, 470
BstX2I	RGATCY	1 cut(s)	500
BstYI	RGATCY	1 cut(s)	500
BsuRI	GGCC	2 cut(s)	327, 578
BtgI	CCRYGG	1 cut(s)	530
BtsI	GCAGTG	2 cut(s)	173, 690
BtsIMutI	CAGTG	2 cut(s)	173, 690
Cac8I	GCNNGC	1 cut(s)	481
CciI	TCATGA	1 cut(s)	439
CfoI	GCGC	1 cut(s)	303
CseI	GACGC	2 cut(s)	159, 206
Csp6I	GTAC	2 cut(s)	47, 666
CviAII	CATG	3 cut(s)	440, 531, 615
CviQI	GTAC	2 cut(s)	47, 666
DpnI	GATC	6 cut(s)	5, 95, 252, 491, 502, 689
DpnII	GATC	6 cut(s)	3, 93, 250, 489, 500, 687
Eco130I	CCWWGG	3 cut(s)	328, 530, 760
Eco31I	GGTCTC	1 cut(s)	110
Eco57I	CTGAAG	1 cut(s)	452
Eco88I	CYCGRG	1 cut(s)	119
EcoRII	CCWGG	2 cut(s)	228, 747
EcoT14I	CCWWGG	3 cut(s)	328, 530, 760
ErhI	CCWWGG	3 cut(s)	328, 530, 760
Esp3I	CGTCTC	1 cut(s)	189
FaeI	CATG	3 cut(s)	443, 534, 618
FatI	CATG	3 cut(s)	439, 530, 614
FauI	CCCGC	1 cut(s)	346
FbaI	TGATCA	2 cut(s)	93, 687
Fnu4HI	GCNGC	4 cut(s)	190, 219, 336, 459
Fsp4HI	GCNGC	4 cut(s)	190, 219, 336, 459
FspBI	CTAG	2 cut(s)	596, 698
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	4 cut(s)	190, 219, 336, 459
GsuI	CTGGAG	1 cut(s)	33
HaeIII	GGCC	2 cut(s)	327, 578
HapII	CCGG	1 cut(s)	579
HgaI	GACGC	2 cut(s)	159, 206
HhaI	GCGC	1 cut(s)	303
Hin1I	GRCGYC	1 cut(s)	151
Hin1II	CATG	3 cut(s)	443, 534, 618
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HindIII	AAGCTT	1 cut(s)	583
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	1 cut(s)	579
Hpy166II	GTNNAC	1 cut(s)	601
Hpy188I	TCNGA	5 cut(s)	74, 211, 432, 515, 547
Hpy188III	TCNNGA	4 cut(s)	119, 248, 440, 712
Hpy8I	GTNNAC	1 cut(s)	601
HpyAV	CCTTC	4 cut(s)	37, 427, 643, 683
HpyCH4V	TGCA	7 cut(s)	173, 178, 335, 383, 458, 614, 683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
Hsp92I	GRCGYC	1 cut(s)	151
Hsp92II	CATG	3 cut(s)	443, 534, 618
HspAI	GCGC	1 cut(s)	301
Ksp22I	TGATCA	2 cut(s)	93, 687
Kzo9I	GATC	6 cut(s)	3, 93, 250, 489, 500, 687
LmnI	GCTCC	2 cut(s)	466, 521
Lsp1109I	GCAGC	3 cut(s)	230, 347, 470
LweI	GCATC	2 cut(s)	392, 445
MaeI	CTAG	2 cut(s)	596, 698
MaeIII	GTNAC	2 cut(s)	7, 319
MalI	GATC	6 cut(s)	5, 95, 252, 491, 502, 689
MboI	GATC	6 cut(s)	3, 93, 250, 489, 500, 687
MboII	GAAGA	1 cut(s)	369
MflI	RGATCY	1 cut(s)	500
MluCI	AATT	5 cut(s)	75, 269, 369, 443, 768
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	632
MnlI	CCTC	4 cut(s)	48, 270, 375, 419
MseI	TTAA	3 cut(s)	567, 587, 771
MslI	CAYNNNNRTG	1 cut(s)	619
MspI	CCGG	1 cut(s)	579
MspR9I	CCNGG	2 cut(s)	230, 749
Mva1269I	GAATGC	1 cut(s)	449
MvaI	CCWGG	2 cut(s)	230, 749
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	455
NcoI	CCATGG	1 cut(s)	530
NdeII	GATC	6 cut(s)	3, 93, 250, 489, 500, 687
NlaIII	CATG	3 cut(s)	443, 534, 618
NlaIV	GGNNCC	1 cut(s)	257
PagI	TCATGA	1 cut(s)	439
PctI	GAATGC	1 cut(s)	449
PfoI	TCCNGGA	1 cut(s)	228
PkrI	GCNGC	4 cut(s)	191, 220, 337, 460
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PsiI	TTATAA	1 cut(s)	539
Psp6I	CCWGG	2 cut(s)	228, 747
PspGI	CCWGG	2 cut(s)	228, 747
PspN4I	GGNNCC	1 cut(s)	257
PstI	CTGCAG	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	500
RsaI	GTAC	2 cut(s)	48, 667
RsaNI	GTAC	2 cut(s)	47, 666
RseI	CAYNNNNRTG	1 cut(s)	619
SaqAI	TTAA	3 cut(s)	567, 587, 771
SatI	GCNGC	4 cut(s)	190, 219, 336, 459
Sau3AI	GATC	6 cut(s)	3, 93, 250, 489, 500, 687
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	2 cut(s)	230, 749
SetI	ASST	5 cut(s)	438, 463, 587, 635, 703
SfaNI	GCATC	2 cut(s)	392, 445
SfcI	CTRYAG	2 cut(s)	176, 474
SmiMI	CAYNNNNRTG	1 cut(s)	619
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
Sse9I	AATT	5 cut(s)	75, 269, 369, 443, 768
SsiI	CCGC	3 cut(s)	189, 353, 719
SspMI	CTAG	2 cut(s)	596, 698
StyD4I	CCNGG	2 cut(s)	228, 747
StyI	CCWWGG	3 cut(s)	328, 530, 760
TaqI	TCGA	2 cut(s)	276, 453
TaqII	GACCGA	2 cut(s)	92, 295
TasI	AATT	5 cut(s)	75, 269, 369, 443, 768
TatI	WGTACW	1 cut(s)	46
TauI	GCSGC	1 cut(s)	192
Tru1I	TTAA	3 cut(s)	567, 587, 771
Tru9I	TTAA	3 cut(s)	567, 587, 771
TscAI	CASTG	2 cut(s)	180, 690
TseI	GCWGC	3 cut(s)	218, 335, 458
TspDTI	ATGAA	6 cut(s)	19, 103, 228, 411, 428, 456
TspRI	CASTG	2 cut(s)	180, 690
XspI	CTAG	2 cut(s)	596, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.