Rh4CG211700
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0017247
Physical Location & Seq
Forward (+)
44125459 .. 44126367
909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG211700.1

Sequence Viewer

Length: 402 bp
ATGGATTATACAGAAATGTTTCAGCACCACTCGGAAAATGTCCTAGACTTGTTCCAAAAGAGATATGCTTACTCACTCATAGTTGGAGTTGGGCTCATGTCACTGCAACAACTTGGGGGTTCCTATGCAATAACATTTTACGCAAGTTCTATATTTGTAGATGCAGGTTTTCCAAGTGACATTGGAACTATATCATCGTTTCTCATTGCAATACCTGGTGTTGCACTGAGTGTGCTCCTAACAGACAAAGCTGGAAGACGACCACTTCTAATGGTTTCTGCAGGCGGATTGTGCTTGTGTAACTTCCTTGTGGGCTTGGCATTCTGCTTTCAGGACCTCAACTTGTGGAAGGAGGTCACTCCCATTTTGGTGTACAATAGCTTGTTGGTAAGTATATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

133

Amino Acids

14.57

Weight (kDa)

5.03

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 8 - 114 5.7e-17 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24280 FvH4_2g24280
malus_domestica MD03G1272400.v1.1
prunus_persica Prupe.6G151200_v2.0.a1 Prupe.6G151200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416101 RchiOBHm_Chr6g0292111
rosa_multiflora Rmu_sc0021497.1_g000001
rosa_roxburghii Rroxscaffold_7G00175420
rosa_samantha Rh4CG211700 Rh4DG198000 Rh6DG337200
rosa_wichuraiana Rw0G019020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 155
AciI CCGC 1 cut(s) 285
AdeI CACNNNGTG 1 cut(s) 230
AfaI GTAC 1 cut(s) 374
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 2 cut(s) 251, 381
AluI AGCT 2 cut(s) 251, 381
Alw21I GWGCWC 1 cut(s) 237
Asp700I GAANNNNTTC 1 cut(s) 18
AspS9I GGNCC 1 cut(s) 334
AvaII GGWCC 1 cut(s) 334
BanII GRGCYC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 262
Bbv12I GWGCWC 1 cut(s) 237
BciT130I CCWGG 1 cut(s) 216
BfaI CTAG 1 cut(s) 44
BfmI CTRYAG 1 cut(s) 279
BfuAI ACCTGC 1 cut(s) 155
Bme1390I CCNGG 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 334
BmgT120I GGNCC 1 cut(s) 334
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 216
BmsI GCATC 1 cut(s) 151
BpiI GAAGAC 1 cut(s) 262
BplI GAGNNNNNCTC 2 cut(s) 78, 110
Bse3DI GCAATG 1 cut(s) 204
BseBI CCWGG 1 cut(s) 216
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 218
BsiHKAI GWGCWC 1 cut(s) 237
BsmI GAATGC 1 cut(s) 320
Bsp1286I GDGCHC 2 cut(s) 96, 237
Bsp1407I TGTACA 1 cut(s) 372
BspACI CCGC 1 cut(s) 285
BspCNI CTCAG 1 cut(s) 219
BspLI GGNNCC 1 cut(s) 121
BspMAI CTGCAG 1 cut(s) 283
BspMI ACCTGC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 204
BsrGI TGTACA 1 cut(s) 372
Bst2UI CCWGG 1 cut(s) 216
BstAUI TGTACA 1 cut(s) 372
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 1 cut(s) 227
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstNI CCWGG 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 214
BstSFI CTRYAG 1 cut(s) 279
BstV2I GAAGAC 1 cut(s) 262
BtsI GCAGTG 1 cut(s) 101
BtsIMutI CAGTG 2 cut(s) 101, 224
BveI ACCTGC 1 cut(s) 155
Cac8I GCNNGC 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 334
CsiI ACCWGGT 1 cut(s) 214
Csp6I GTAC 1 cut(s) 373
CviAII CATG 1 cut(s) 97
CviJI RGCY 4 cut(s) 94, 251, 315, 381
CviKI_1 RGCY 4 cut(s) 94, 251, 315, 381
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 1 cut(s) 227
DraIII CACNNNGTG 1 cut(s) 230
EciI GGCGGA 1 cut(s) 300
Eco24I GRGCYC 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 334
EcoO109I RGGNCCY 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 96
FaeI CATG 1 cut(s) 100
FaiI YATR 8 cut(s) 9, 66, 80, 98, 126, 152, 191, 395
FatI CATG 1 cut(s) 96
FriOI GRGCYC 1 cut(s) 96
FspBI CTAG 1 cut(s) 44
Hin1II CATG 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 1 cut(s) 332
Hpy8I GTNNAC 1 cut(s) 373
HpyAV CCTTC 1 cut(s) 343
HpyCH4V TGCA 6 cut(s) 106, 128, 164, 209, 224, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
HpyF3I CTNAG 1 cut(s) 227
Hsp92II CATG 1 cut(s) 100
LmnI GCTCC 1 cut(s) 240
LpnPI CCDG 6 cut(s) 150, 201, 228, 237, 267, 317
LweI GCATC 1 cut(s) 151
MabI ACCWGGT 1 cut(s) 214
MaeI CTAG 1 cut(s) 44
MaeIII GTNAC 4 cut(s) 99, 176, 299, 355
MboII GAAGA 1 cut(s) 267
MhlI GDGCHC 2 cut(s) 96, 237
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 2 cut(s) 346, 347
MroXI GAANNNNTTC 1 cut(s) 18
MslI CAYNNNNRTG 1 cut(s) 368
MspR9I CCNGG 1 cut(s) 216
Mva1269I GAATGC 1 cut(s) 320
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 291
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 3 cut(s) 99, 176, 355
PctI GAATGC 1 cut(s) 320
PdmI GAANNNNTTC 1 cut(s) 18
PpuMI RGGWCCY 1 cut(s) 334
Psp5II RGGWCCY 1 cut(s) 334
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 121
PspPI GGNCC 1 cut(s) 334
PspPPI RGGWCCY 1 cut(s) 334
PstI CTGCAG 1 cut(s) 283
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
RseI CAYNNNNRTG 1 cut(s) 368
Sau96I GGNCC 1 cut(s) 334
ScrFI CCNGG 1 cut(s) 216
SduI GDGCHC 2 cut(s) 96, 237
SetI ASST 6 cut(s) 169, 217, 253, 339, 357, 383
SexAI ACCWGGT 1 cut(s) 214
SfaNI GCATC 1 cut(s) 151
SfcI CTRYAG 1 cut(s) 279
SinI GGWCC 1 cut(s) 334
SmiMI CAYNNNNRTG 1 cut(s) 368
SsiI CCGC 1 cut(s) 285
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 214
TatI WGTACW 1 cut(s) 372
TscAI CASTG 2 cut(s) 108, 231
TseFI GTSAC 3 cut(s) 99, 176, 355
Tsp45I GTSAC 3 cut(s) 99, 176, 355
TspRI CASTG 2 cut(s) 108, 231
VpaK11BI GGWCC 1 cut(s) 334
XmnI GAANNNNTTC 1 cut(s) 18
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.