Rh4DG198000
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0017247
Physical Location & Seq
Forward (+)
38654822 .. 38658965
4144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG198000.1

Sequence Viewer

Length: 684 bp
ATGGATTATACAGAAATGTTTCAGCACCACTCGGAAAAAGTCCTAGACTTGTTCCAAAAGAGATATGCTTACTCACTCATAGTTGGAGTTGGGCTCATGTCACTGCAACAACTTGGGGGTTCCTATGCAATAACATTTTACGCAAGTTCTATATTTGTAGATGCAGGTTTTCCAAGTGACATTGGAACTATATCATCGTCTCTCATTGCGATACCTGGTGTTGCACTGAGTGTGCTCTTAACAGACAAAGCTGGAAGACGACCACTTCTATTGGTTTCTGCAGGCGAATTGTGCTTGTGTAACTTCCTTGTGGGCTTGGCATTCTGCTTTCAGGACCTCAACCTGTGGAAGGAGGTCACTTCCATTTTGGTGTACATTAGCTTGTTGGGGCAATGTGTATCAAACACAATAGGGATGTCAGGATTACCCTGGGTTATTATATCAGAGATATACCCCATAAACGTTAAAGGTTCATCTGGAAGCCTCTCAAGTTTGGTAAAATGGTCTTGTGCTTGGATAGTAACTTACACTTTCAATTTCATGATGGACTGGAGCTCGGCAGGAACATTCTTCATCTTCTCAGCCATTTGCGGCATAACACTACTGTTTGTAGCAAAGCTGGTGCCGGAGACCAAGGGGCGAACCCTAGAGGAAATACAAGCATCAATTGCCCATTTCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

227

Amino Acids

24.86

Weight (kDa)

5.88

Isoelectric Point (pI)

35.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 8 - 221 5.8e-39 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24280 FvH4_2g24280
malus_domestica MD03G1272400.v1.1
prunus_persica Prupe.6G151200_v2.0.a1 Prupe.6G151200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416101 RchiOBHm_Chr6g0292111
rosa_multiflora Rmu_sc0021497.1_g000001
rosa_roxburghii Rroxscaffold_7G00175420
rosa_samantha Rh4CG211700 Rh4DG198000 Rh6DG337200
rosa_wichuraiana Rw0G019020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 155
AccB1I GGYRCC 1 cut(s) 622
AciI CCGC 2 cut(s) 591, 679
AclI AACGTT 1 cut(s) 462
AdeI CACNNNGTG 1 cut(s) 230
AfaI GTAC 1 cut(s) 374
AfiI CCNNNNNNNGG 1 cut(s) 349
AgsI TTSAA 1 cut(s) 535
AjnI CCWGG 2 cut(s) 214, 428
AluBI AGCT 4 cut(s) 251, 381, 555, 619
AluI AGCT 4 cut(s) 251, 381, 555, 619
Alw21I GWGCWC 2 cut(s) 237, 557
Alw26I GTCTC 2 cut(s) 204, 623
Asp700I GAANNNNTTC 1 cut(s) 18
AspS9I GGNCC 1 cut(s) 334
AvaII GGWCC 1 cut(s) 334
BanI GGYRCC 1 cut(s) 622
BanII GRGCYC 2 cut(s) 96, 557
BbsI GAAGAC 1 cut(s) 262
Bbv12I GWGCWC 2 cut(s) 237, 557
BccI CCATC 1 cut(s) 538
BciT130I CCWGG 2 cut(s) 216, 430
BcoDI GTCTC 2 cut(s) 204, 623
BfaI CTAG 2 cut(s) 44, 647
BfmI CTRYAG 1 cut(s) 279
BfuAI ACCTGC 1 cut(s) 155
BisI GCNGC 1 cut(s) 592
BlsI GCNGC 1 cut(s) 593
Bme1390I CCNGG 2 cut(s) 216, 430
Bme18I GGWCC 1 cut(s) 334
BmgT120I GGNCC 1 cut(s) 334
BmiI GGNNCC 2 cut(s) 121, 624
BmrFI CCNGG 2 cut(s) 216, 430
BmsI GCATC 2 cut(s) 151, 671
BpiI GAAGAC 1 cut(s) 262
BplI GAGNNNNNCTC 2 cut(s) 78, 110
BpmI CTGGAG 1 cut(s) 571
BpuEI CTTGAG 1 cut(s) 472
BsaI GGTCTC 1 cut(s) 623
BsaJI CCNNGG 3 cut(s) 428, 429, 633
Bsc4I CCNNNNNNNGG 1 cut(s) 349
Bse1I ACTGG 1 cut(s) 554
Bse3DI GCAATG 2 cut(s) 204, 398
BseBI CCWGG 2 cut(s) 216, 430
BseDI CCNNGG 3 cut(s) 428, 429, 633
BseGI GGATG 1 cut(s) 420
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMI GCAATG 2 cut(s) 204, 398
BseMII CTCAG 2 cut(s) 218, 594
BseNI ACTGG 1 cut(s) 554
BshNI GGYRCC 1 cut(s) 622
BsiHKAI GWGCWC 2 cut(s) 237, 557
BsiSI CCGG 1 cut(s) 626
BslI CCNNNNNNNGG 1 cut(s) 349
BsmAI GTCTC 2 cut(s) 204, 623
BsmBI CGTCTC 1 cut(s) 204
BsmI GAATGC 1 cut(s) 320
Bso31I GGTCTC 1 cut(s) 623
Bsp1286I GDGCHC 3 cut(s) 96, 237, 557
Bsp1407I TGTACA 1 cut(s) 372
BspACI CCGC 2 cut(s) 591, 679
BspCNI CTCAG 2 cut(s) 219, 593
BspHI TCATGA 1 cut(s) 540
BspLI GGNNCC 2 cut(s) 121, 624
BspMAI CTGCAG 1 cut(s) 283
BspMI ACCTGC 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 622
BspTNI GGTCTC 1 cut(s) 623
BsrDI GCAATG 2 cut(s) 204, 398
BsrGI TGTACA 1 cut(s) 372
BsrI ACTGG 1 cut(s) 554
BssECI CCNNGG 3 cut(s) 428, 429, 633
BssT1I CCWWGG 1 cut(s) 633
Bst2UI CCWGG 2 cut(s) 216, 430
Bst4CI ACNGT 1 cut(s) 606
BstAPI GCANNNNNTGC 1 cut(s) 668
BstAUI TGTACA 1 cut(s) 372
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 2 cut(s) 227, 580
BstENI CCTNNNNNAGG 1 cut(s) 347
BstF5I GGATG 1 cut(s) 420
BstMAI GTCTC 2 cut(s) 204, 623
BstMWI GCNNNNNNNGC 2 cut(s) 291, 668
BstNI CCWGG 2 cut(s) 216, 430
BstSCI CCNGG 2 cut(s) 214, 428
BstSFI CTRYAG 1 cut(s) 279
BstV2I GAAGAC 1 cut(s) 262
BtsCI GGATG 1 cut(s) 420
BtsI GCAGTG 1 cut(s) 101
BtsIMutI CAGTG 2 cut(s) 101, 224
BveI ACCTGC 1 cut(s) 155
Cac8I GCNNGC 1 cut(s) 283
CciI TCATGA 1 cut(s) 540
Cfr13I GGNCC 1 cut(s) 334
CsiI ACCWGGT 1 cut(s) 214
Csp6I GTAC 1 cut(s) 373
CspCI CAANNNNNGTGG 2 cut(s) 252, 287
CviAII CATG 2 cut(s) 97, 541
CviJI RGCY 8 cut(s) 94, 251, 315, 381, 483, 555, 584, 619
CviKI_1 RGCY 8 cut(s) 94, 251, 315, 381, 483, 555, 584, 619
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 2 cut(s) 227, 580
DraIII CACNNNGTG 1 cut(s) 230
Ecl136II GAGCTC 1 cut(s) 555
Eco130I CCWWGG 1 cut(s) 633
Eco24I GRGCYC 2 cut(s) 96, 557
Eco31I GGTCTC 1 cut(s) 623
Eco47I GGWCC 1 cut(s) 334
Eco53kI GAGCTC 1 cut(s) 555
EcoICRI GAGCTC 1 cut(s) 555
EcoNI CCTNNNNNAGG 1 cut(s) 347
EcoO109I RGGNCCY 1 cut(s) 334
EcoRII CCWGG 2 cut(s) 214, 428
EcoT14I CCWWGG 1 cut(s) 633
EcoT38I GRGCYC 2 cut(s) 96, 557
ErhI CCWWGG 1 cut(s) 633
Esp3I CGTCTC 1 cut(s) 204
FaeI CATG 2 cut(s) 100, 544
FatI CATG 2 cut(s) 96, 540
Fnu4HI GCNGC 1 cut(s) 592
FokI GGATG 1 cut(s) 427
FriOI GRGCYC 2 cut(s) 96, 557
Fsp4HI GCNGC 1 cut(s) 592
FspBI CTAG 2 cut(s) 44, 647
GluI GCNGC 1 cut(s) 592
GsuI CTGGAG 1 cut(s) 571
HapII CCGG 1 cut(s) 626
Hin1II CATG 2 cut(s) 100, 544
HpaII CCGG 1 cut(s) 626
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 2 cut(s) 34, 445
Hpy188III TCNNGA 4 cut(s) 332, 420, 477, 541
Hpy8I GTNNAC 1 cut(s) 373
HpyAV CCTTC 1 cut(s) 343
HpyCH4III ACNGT 1 cut(s) 606
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 5 cut(s) 106, 128, 164, 224, 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 291, 668
HpyF3I CTNAG 2 cut(s) 227, 580
HpySE526I ACGT 1 cut(s) 462
Hsp92II CATG 2 cut(s) 100, 544
LmnI GCTCC 1 cut(s) 552
LweI GCATC 2 cut(s) 151, 671
MabI ACCWGGT 1 cut(s) 214
MaeI CTAG 2 cut(s) 44, 647
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 5 cut(s) 99, 176, 299, 355, 520
MboII GAAGA 3 cut(s) 267, 562, 568
MfeI CAATTG 1 cut(s) 666
MhlI GDGCHC 3 cut(s) 96, 237, 557
MluCI AATT 3 cut(s) 287, 535, 666
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 4 cut(s) 346, 347, 494, 643
MroXI GAANNNNTTC 1 cut(s) 18
MseI TTAA 2 cut(s) 239, 465
MslI CAYNNNNRTG 1 cut(s) 368
MspA1I CMGCKG 1 cut(s) 681
MspI CCGG 1 cut(s) 626
MspR9I CCNGG 2 cut(s) 216, 430
MunI CAATTG 1 cut(s) 666
Mva1269I GAATGC 1 cut(s) 320
MvaI CCWGG 2 cut(s) 216, 430
MwoI GCNNNNNNNGC 2 cut(s) 291, 668
NlaIII CATG 2 cut(s) 100, 544
NlaIV GGNNCC 2 cut(s) 121, 624
NmeAIII GCCGAG 1 cut(s) 536
NmuCI GTSAC 3 cut(s) 99, 176, 355
PagI TCATGA 1 cut(s) 540
PasI CCCWGGG 1 cut(s) 429
PctI GAATGC 1 cut(s) 320
PdmI GAANNNNTTC 1 cut(s) 18
PkrI GCNGC 1 cut(s) 593
PpuMI RGGWCCY 1 cut(s) 334
Psp124BI GAGCTC 1 cut(s) 557
Psp1406I AACGTT 1 cut(s) 462
Psp5II RGGWCCY 1 cut(s) 334
Psp6I CCWGG 2 cut(s) 214, 428
PspGI CCWGG 2 cut(s) 214, 428
PspN4I GGNNCC 2 cut(s) 121, 624
PspPI GGNCC 1 cut(s) 334
PspPPI RGGWCCY 1 cut(s) 334
PstI CTGCAG 1 cut(s) 283
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
RseI CAYNNNNRTG 1 cut(s) 368
SacI GAGCTC 1 cut(s) 557
SaqAI TTAA 2 cut(s) 239, 465
SatI GCNGC 1 cut(s) 592
Sau96I GGNCC 1 cut(s) 334
ScrFI CCNGG 2 cut(s) 216, 430
SduI GDGCHC 3 cut(s) 96, 237, 557
SexAI ACCWGGT 1 cut(s) 214
SfaNI GCATC 2 cut(s) 151, 671
SfcI CTRYAG 1 cut(s) 279
SinI GGWCC 1 cut(s) 334
SmiMI CAYNNNNRTG 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 487
SmoI CTYRAG 1 cut(s) 487
Sse9I AATT 3 cut(s) 287, 535, 666
SsiI CCGC 2 cut(s) 591, 679
SspMI CTAG 2 cut(s) 44, 647
SstI GAGCTC 1 cut(s) 557
StyD4I CCNGG 2 cut(s) 214, 428
StyI CCWWGG 1 cut(s) 633
TaaI ACNGT 1 cut(s) 606
TaiI ACGT 1 cut(s) 465
TasI AATT 3 cut(s) 287, 535, 666
TatI WGTACW 1 cut(s) 372
TauI GCSGC 1 cut(s) 594
Tru1I TTAA 2 cut(s) 239, 465
Tru9I TTAA 2 cut(s) 239, 465
TscAI CASTG 2 cut(s) 108, 231
TseFI GTSAC 3 cut(s) 99, 176, 355
Tsp45I GTSAC 3 cut(s) 99, 176, 355
TspDTI ATGAA 3 cut(s) 462, 529, 562
TspRI CASTG 2 cut(s) 108, 231
VpaK11BI GGWCC 1 cut(s) 334
XagI CCTNNNNNAGG 1 cut(s) 347
XmnI GAANNNNTTC 1 cut(s) 18
XspI CTAG 2 cut(s) 44, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.