Rw0G019020
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00855
OG0017247
Physical Location & Seq
Reverse (-)
39430 .. 40798
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G019020.1

Sequence Viewer

Length: 246 bp
ATGCAGGAAATATACCCCATAAACGTTAAAGGTTCAGCTGGAAGCCTCTCAAGTTTGGTAAAATGGTCTTGTGCTTGGATAGTAACTTACACCTTCAATTTCATGATGGACTGGAGCTCGGCAGGAACATTCTTCATCTTCTCAGCCATTTGCGGCATAACACTACTGTTTGTAGCAAAGCTGGTGCCGGAGACCAAGGGGCGAACCCTAGAGGAAATACAAGCATCAATTGCCCATTTCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

81

Amino Acids

9.06

Weight (kDa)

7.8

Isoelectric Point (pI)

24.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 1 - 75 2e-15 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017247)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24280 FvH4_2g24280
malus_domestica MD03G1272400.v1.1
prunus_persica Prupe.6G151200_v2.0.a1 Prupe.6G151200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416101 RchiOBHm_Chr6g0292111
rosa_multiflora Rmu_sc0021497.1_g000001
rosa_roxburghii Rroxscaffold_7G00175420
rosa_samantha Rh4CG211700 Rh4DG198000 Rh6DG337200
rosa_wichuraiana Rw0G019020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 184
AciI CCGC 2 cut(s) 153, 241
AclI AACGTT 1 cut(s) 24
AgsI TTSAA 1 cut(s) 97
AluBI AGCT 3 cut(s) 38, 117, 181
AluI AGCT 3 cut(s) 38, 117, 181
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 185
BanI GGYRCC 1 cut(s) 184
BanII GRGCYC 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 119
BccI CCATC 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 1 cut(s) 209
BisI GCNGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 186
BmsI GCATC 1 cut(s) 233
BpmI CTGGAG 1 cut(s) 133
BpuEI CTTGAG 1 cut(s) 34
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 195
Bse1I ACTGG 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 195
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 116
BshNI GGYRCC 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 185
Bso31I GGTCTC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 119
BspACI CCGC 2 cut(s) 153, 241
BspCNI CTCAG 1 cut(s) 155
BspHI TCATGA 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 184
BspTNI GGTCTC 1 cut(s) 185
BsrI ACTGG 1 cut(s) 116
BssECI CCNNGG 1 cut(s) 195
BssT1I CCWWGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 168
BstAPI GCANNNNNTGC 1 cut(s) 230
BstDEI CTNAG 1 cut(s) 142
BstMAI GTCTC 1 cut(s) 185
BstMWI GCNNNNNNNGC 1 cut(s) 230
CciI TCATGA 1 cut(s) 102
CviAII CATG 1 cut(s) 103
CviJI RGCY 5 cut(s) 38, 45, 117, 146, 181
CviKI_1 RGCY 5 cut(s) 38, 45, 117, 146, 181
DdeI CTNAG 1 cut(s) 142
Ecl136II GAGCTC 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 119
Eco31I GGTCTC 1 cut(s) 185
Eco53kI GAGCTC 1 cut(s) 117
EcoICRI GAGCTC 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 195
EcoT38I GRGCYC 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 1 cut(s) 106
FaiI YATR 4 cut(s) 13, 20, 104, 158
FatI CATG 1 cut(s) 102
Fnu4HI GCNGC 1 cut(s) 154
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 154
FspBI CTAG 1 cut(s) 209
GluI GCNGC 1 cut(s) 154
GsuI CTGGAG 1 cut(s) 133
HapII CCGG 1 cut(s) 188
Hin1II CATG 1 cut(s) 106
HpaII CCGG 1 cut(s) 188
Hpy188III TCNNGA 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 168
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 1 cut(s) 142
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 1 cut(s) 106
LmnI GCTCC 1 cut(s) 114
LpnPI CCDG 5 cut(s) 24, 97, 108, 167, 201
LweI GCATC 1 cut(s) 233
MaeI CTAG 1 cut(s) 209
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 82
MboII GAAGA 2 cut(s) 124, 130
MfeI CAATTG 1 cut(s) 228
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 2 cut(s) 97, 228
MnlI CCTC 2 cut(s) 56, 205
MseI TTAA 1 cut(s) 27
MspA1I CMGCKG 2 cut(s) 38, 243
MspI CCGG 1 cut(s) 188
MunI CAATTG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 230
NlaIII CATG 1 cut(s) 106
NlaIV GGNNCC 1 cut(s) 186
NmeAIII GCCGAG 1 cut(s) 98
PagI TCATGA 1 cut(s) 102
PkrI GCNGC 1 cut(s) 155
Psp124BI GAGCTC 1 cut(s) 119
Psp1406I AACGTT 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 186
PvuII CAGCTG 1 cut(s) 38
SacI GAGCTC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 1 cut(s) 154
SduI GDGCHC 1 cut(s) 119
SetI ASST 6 cut(s) 27, 34, 40, 95, 119, 183
SfaNI GCATC 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 2 cut(s) 97, 228
SsiI CCGC 2 cut(s) 153, 241
SspMI CTAG 1 cut(s) 209
SstI GAGCTC 1 cut(s) 119
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 168
TaiI ACGT 1 cut(s) 27
TasI AATT 2 cut(s) 97, 228
TauI GCSGC 1 cut(s) 156
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TspDTI ATGAA 2 cut(s) 91, 124
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.