Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021497.1

Orthogroup ID

OG0017247

Physical Location & Seq

Genomic Coordinates Reverse (-)

1151 .. 1833

Gene Structure 683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021497.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgacaataataaaactctttctgaaccaggctcaagaattggctctcaatggtgctcccgtacttgctgtaactggcatactgatctttgtgtgcgccttttcaatcggaatgggagcagtaccttggcttattatgtctgagatattccctataaatattaaagggcaggccggaagcttagcaacgctagtgaactggtttggtgcatggttgtgttcctactctttcaacttccttatgagttggagcacctatggtaccttcattctgtatgcagcaatcaatgctctagctatagtttttgtgattttctttgtacctgaaacaaaggggaaaactctggaacaaatccaaacagccataagcaaagagagaagtgaagaaagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071702 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

130

Amino Acids

14.35

Weight (kDa)

6.17

Isoelectric Point (pI)

35.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24280 FvH4_2g24280
malus_domestica	MD03G1272400.v1.1
prunus_persica	Prupe.6G151200_v2.0.a1 Prupe.6G151200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0416101 RchiOBHm_Chr6g0292111
rosa_multiflora	Rmu_sc0021497.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175420
rosa_samantha	Rh4CG211700 Rh4DG198000 Rh6DG337200
rosa_wichuraiana	Rw0G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	260
AccB1I	GGYRCC	1 cut(s)	260
AfaI	GTAC	4 cut(s)	63, 123, 262, 321
AgsI	TTSAA	2 cut(s)	105, 232
AjnI	CCWGG	1 cut(s)	27
AluBI	AGCT	2 cut(s)	180, 296
AluI	AGCT	2 cut(s)	180, 296
Alw21I	GWGCWC	2 cut(s)	58, 254
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	278
Asp718I	GGTACC	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	98
BanI	GGYRCC	1 cut(s)	260
Bbv12I	GWGCWC	2 cut(s)	58, 254
BbvI	GCAGC	1 cut(s)	290
BciT130I	CCWGG	1 cut(s)	29
BfaI	CTAG	2 cut(s)	191, 293
BfmI	CTRYAG	1 cut(s)	297
BisI	GCNGC	1 cut(s)	279
BlpI	GCTNAGC	1 cut(s)	181
BlsI	GCNGC	1 cut(s)	280
Bme1390I	CCNGG	1 cut(s)	29
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	29
Bpu1102I	GCTNAGC	1 cut(s)	181
BpuEI	CTTGAG	1 cut(s)	18
BsaJI	CCNNGG	1 cut(s)	125
Bse1I	ACTGG	2 cut(s)	79, 203
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	125
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	2 cut(s)	79, 203
BseXI	GCAGC	1 cut(s)	290
BshFI	GGCC	1 cut(s)	173
BshNI	GGYRCC	1 cut(s)	260
BsiHKAI	GWGCWC	2 cut(s)	58, 254
BsiSI	CCGG	1 cut(s)	174
BsnI	GGCC	1 cut(s)	173
Bsp1286I	GDGCHC	2 cut(s)	58, 254
Bsp143I	GATC	1 cut(s)	84
Bsp1720I	GCTNAGC	1 cut(s)	181
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	260
BsrI	ACTGG	2 cut(s)	79, 203
BssECI	CCNNGG	1 cut(s)	125
BssMI	GATC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	125
Bst2UI	CCWGG	1 cut(s)	29
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	2 cut(s)	141, 181
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	1 cut(s)	87
BstMBI	GATC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	27
BstSFI	CTRYAG	1 cut(s)	297
BstV1I	GCAGC	1 cut(s)	290
BsuRI	GGCC	1 cut(s)	173
Cac8I	GCNNGC	1 cut(s)	171
CfoI	GCGC	1 cut(s)	98
Csp6I	GTAC	4 cut(s)	62, 122, 261, 320
CviAII	CATG	1 cut(s)	210
CviJI	RGCY	7 cut(s)	32, 44, 130, 173, 180, 296, 362
CviKI_1	RGCY	7 cut(s)	32, 44, 130, 173, 180, 296, 362
CviQI	GTAC	4 cut(s)	62, 122, 261, 320
DdeI	CTNAG	2 cut(s)	141, 181
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	1 cut(s)	213
FaiI	YATR	9 cut(s)	80, 137, 155, 211, 242, 258, 276, 299, 365
FatI	CATG	1 cut(s)	209
Fnu4HI	GCNGC	1 cut(s)	279
Fsp4HI	GCNGC	1 cut(s)	279
FspBI	CTAG	2 cut(s)	191, 293
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	173
HapII	CCGG	1 cut(s)	174
HhaI	GCGC	1 cut(s)	98
Hin1II	CATG	1 cut(s)	213
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HindIII	AAGCTT	1 cut(s)	178
HpaII	CCGG	1 cut(s)	174
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	3 cut(s)	24, 110, 142
Hpy188III	TCNNGA	2 cut(s)	35, 344
Hpy8I	GTNNAC	1 cut(s)	196
HpyAV	CCTTC	1 cut(s)	274
HpyCH4V	TGCA	2 cut(s)	209, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	2 cut(s)	141, 181
Hsp92II	CATG	1 cut(s)	213
HspAI	GCGC	1 cut(s)	96
KpnI	GGTACC	1 cut(s)	264
Kzo9I	GATC	1 cut(s)	84
LmnI	GCTCC	3 cut(s)	61, 116, 249
LpnPI	CCDG	8 cut(s)	14, 41, 60, 155, 184, 187, 329, 336
Lsp1109I	GCAGC	1 cut(s)	290
MaeI	CTAG	2 cut(s)	191, 293
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MhlI	GDGCHC	2 cut(s)	58, 254
MluCI	AATT	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	227
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	214
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	287
NdeII	GATC	1 cut(s)	84
NlaIII	CATG	1 cut(s)	213
NlaIV	GGNNCC	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	280
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	262
RsaI	GTAC	4 cut(s)	63, 123, 262, 321
RsaNI	GTAC	4 cut(s)	62, 122, 261, 320
RseI	CAYNNNNRTG	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	1 cut(s)	84
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	2 cut(s)	58, 254
SetI	ASST	6 cut(s)	127, 182, 257, 266, 298, 325
SfcI	CTRYAG	1 cut(s)	297
SmiMI	CAYNNNNRTG	1 cut(s)	214
SmlI	CTYRAG	1 cut(s)	33
SmoI	CTYRAG	1 cut(s)	33
Sse9I	AATT	1 cut(s)	38
SspI	AATATT	1 cut(s)	160
SspMI	CTAG	2 cut(s)	191, 293
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	125
TasI	AATT	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseI	GCWGC	1 cut(s)	278
TspDTI	ATGAA	1 cut(s)	256
XspI	CTAG	2 cut(s)	191, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.