Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0017247

Physical Location & Seq

Genomic Coordinates Reverse (-)

54149109 .. 54150355

Gene Structure 1247 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG337200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGTCTTTCAACAACTGGGAGGAATCAATGGTGTTTGTTTCTATGTCAGCGATATTTTTGAGCAAGCAGGATTTTCTTCCACCGTTGGAACTATAACCTATGCTATTCTCCAGGTTGTGGTAACTGGCATTGGTGCATCCATAATGGATAAAGCTGGACGAAAGCCTCTGATTTTGACTTCTGCATCAGGATTGCTACTTGGCTGTGTAGTGACTGCAATTGCATTCTTTCTCACGGCTCAAGAATTGGCTCTCAATGTTGCTCCCGTACTTGCTGTAACTGGCATACTGATCTTCATAGGAGCCTTTTCAATTGGAATGGGAGCAGTACCTTGGATTATTATGTCTGAGATATTCCCTATAAATATTAAAGGGCAGGCCGGAAGCTTAGCCACGCTAGTGAACTGGTTTGGTGCATGGTTGTGTTCCTACACTTTCAACTTCCTTATGAGTTGGAGCACCTATGGTACCTTCATTCTGTATGCAGCAATCAATGCTTTAGCTATAGTTTTTGTGATTTTCTTTGTACCTGAAACAAAGGGGAAAACTCTGGAACAAATCCAAGCAGCCATAAGCAAAGAGAGAAGTGAAGAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071702 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

199

Amino Acids

21.31

Weight (kDa)

5.34

Isoelectric Point (pI)

32.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	2 - 189	3.3e-45	Sugar (and other) transporter
MFS_1	PF07690	27 - 185	3.4e-09	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017247)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24280 FvH4_2g24280
malus_domestica	MD03G1272400.v1.1
prunus_persica	Prupe.6G151200_v2.0.a1 Prupe.6G151200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0416101 RchiOBHm_Chr6g0292111
rosa_multiflora	Rmu_sc0021497.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175420
rosa_samantha	Rh4CG211700 Rh4DG198000 Rh6DG337200
rosa_wichuraiana	Rw0G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	467
AccB1I	GGYRCC	1 cut(s)	467
AccB7I	CCANNNNNTGG	1 cut(s)	118
AfaI	GTAC	4 cut(s)	270, 330, 469, 528
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	3 cut(s)	11, 312, 439
AjnI	CCWGG	1 cut(s)	111
AleI	CACNNNNGTG	1 cut(s)	398
AluBI	AGCT	3 cut(s)	155, 387, 503
AluI	AGCT	3 cut(s)	155, 387, 503
Alw21I	GWGCWC	1 cut(s)	461
AoxI	GGCC	1 cut(s)	378
ApeKI	GCWGC	2 cut(s)	485, 566
Asp718I	GGTACC	1 cut(s)	467
BanI	GGYRCC	1 cut(s)	467
Bbv12I	GWGCWC	1 cut(s)	461
BbvI	GCAGC	2 cut(s)	497, 578
BceAI	ACGGC	1 cut(s)	252
BciT130I	CCWGG	1 cut(s)	113
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	504
BisI	GCNGC	2 cut(s)	486, 567
BlpI	GCTNAGC	1 cut(s)	388
BlsI	GCNGC	2 cut(s)	487, 568
Bme1390I	CCNGG	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	304, 469
BmrFI	CCNGG	1 cut(s)	113
BmrI	ACTGGG	1 cut(s)	26
BmsI	GCATC	2 cut(s)	146, 194
BmuI	ACTGGG	1 cut(s)	26
BpmI	CTGGAG	1 cut(s)	95
Bpu1102I	GCTNAGC	1 cut(s)	388
BpuEI	CTTGAG	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	332
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse1I	ACTGG	4 cut(s)	21, 130, 286, 410
BseBI	CCWGG	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	332
BseGI	GGATG	1 cut(s)	137
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	4 cut(s)	21, 130, 286, 410
BseXI	GCAGC	2 cut(s)	497, 578
BshFI	GGCC	1 cut(s)	380
BshNI	GGYRCC	1 cut(s)	467
BsiHKAI	GWGCWC	1 cut(s)	461
BsiSI	CCGG	1 cut(s)	381
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmI	GAATGC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	380
Bsp1286I	GDGCHC	1 cut(s)	461
Bsp143I	GATC	1 cut(s)	291
Bsp1720I	GCTNAGC	1 cut(s)	388
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	1 cut(s)	340
BspLI	GGNNCC	2 cut(s)	304, 469
BspT107I	GGYRCC	1 cut(s)	467
BsrI	ACTGG	4 cut(s)	21, 130, 286, 410
BssECI	CCNNGG	1 cut(s)	332
BssMI	GATC	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	332
Bst2UI	CCWGG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	85
BstAPI	GCANNNNNTGC	1 cut(s)	494
BstC8I	GCNNGC	2 cut(s)	66, 378
BstDEI	CTNAG	2 cut(s)	348, 388
BstF5I	GGATG	1 cut(s)	137
BstKTI	GATC	1 cut(s)	294
BstMBI	GATC	1 cut(s)	291
BstMWI	GCNNNNNNNGC	1 cut(s)	494
BstNI	CCWGG	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	1 cut(s)	504
BstV1I	GCAGC	2 cut(s)	497, 578
BsuRI	GGCC	1 cut(s)	380
BtsCI	GGATG	1 cut(s)	137
Cac8I	GCNNGC	2 cut(s)	66, 378
Csp6I	GTAC	4 cut(s)	269, 329, 468, 527
CviAII	CATG	1 cut(s)	417
CviQI	GTAC	4 cut(s)	269, 329, 468, 527
DdeI	CTNAG	2 cut(s)	348, 388
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	332
ErhI	CCWWGG	1 cut(s)	332
FaeI	CATG	1 cut(s)	420
FatI	CATG	1 cut(s)	416
Fnu4HI	GCNGC	2 cut(s)	486, 567
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	2 cut(s)	486, 567
FspBI	CTAG	1 cut(s)	398
GluI	GCNGC	2 cut(s)	486, 567
GsuI	CTGGAG	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	380
HapII	CCGG	1 cut(s)	381
Hin1II	CATG	1 cut(s)	420
HindIII	AAGCTT	1 cut(s)	385
HinfI	GANTC	1 cut(s)	24
HpaII	CCGG	1 cut(s)	381
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	2 cut(s)	171, 349
Hpy188III	TCNNGA	3 cut(s)	189, 242, 551
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	1 cut(s)	481
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4V	TGCA	6 cut(s)	137, 185, 218, 224, 416, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	494
HpyF3I	CTNAG	2 cut(s)	348, 388
Hsp92II	CATG	1 cut(s)	420
KpnI	GGTACC	1 cut(s)	471
Kzo9I	GATC	1 cut(s)	291
LmnI	GCTCC	4 cut(s)	268, 302, 323, 456
Lsp1109I	GCAGC	2 cut(s)	497, 578
LweI	GCATC	2 cut(s)	146, 194
MaeI	CTAG	1 cut(s)	398
MaeIII	GTNAC	3 cut(s)	121, 211, 277
MalI	GATC	1 cut(s)	293
MboI	GATC	1 cut(s)	291
MboII	GAAGA	2 cut(s)	69, 286
MfeI	CAATTG	2 cut(s)	219, 312
MhlI	GDGCHC	1 cut(s)	461
MluCI	AATT	3 cut(s)	219, 245, 312
MmeI	TCCRAC	2 cut(s)	67, 434
MnlI	CCTC	2 cut(s)	14, 177
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	2 cut(s)	398, 421
MspI	CCGG	1 cut(s)	381
MspR9I	CCNGG	1 cut(s)	113
MunI	CAATTG	2 cut(s)	219, 312
Mva1269I	GAATGC	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	494
NdeII	GATC	1 cut(s)	291
NlaIII	CATG	1 cut(s)	420
NlaIV	GGNNCC	2 cut(s)	304, 469
NmuCI	GTSAC	1 cut(s)	211
OliI	CACNNNNGTG	1 cut(s)	398
PctI	GAATGC	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	24
PflMI	CCANNNNNTGG	1 cut(s)	118
PkrI	GCNGC	2 cut(s)	487, 568
Psp6I	CCWGG	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	111
PspN4I	GGNNCC	2 cut(s)	304, 469
RsaI	GTAC	4 cut(s)	270, 330, 469, 528
RsaNI	GTAC	4 cut(s)	269, 329, 468, 527
RseI	CAYNNNNRTG	2 cut(s)	398, 421
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	2 cut(s)	486, 567
Sau3AI	GATC	1 cut(s)	291
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	461
SetI	ASST	9 cut(s)	101, 117, 157, 334, 389, 464, 473, 505, 532
SfaNI	GCATC	2 cut(s)	146, 194
SfcI	CTRYAG	1 cut(s)	504
SmiMI	CAYNNNNRTG	2 cut(s)	398, 421
SmlI	CTYRAG	1 cut(s)	240
SmoI	CTYRAG	1 cut(s)	240
Sse9I	AATT	3 cut(s)	219, 245, 312
SspI	AATATT	1 cut(s)	367
SspMI	CTAG	1 cut(s)	398
StyD4I	CCNGG	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	332
TaaI	ACNGT	1 cut(s)	85
TasI	AATT	3 cut(s)	219, 245, 312
TfiI	GAWTC	1 cut(s)	24
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	2 cut(s)	485, 566
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	2 cut(s)	286, 463
Van91I	CCANNNNNTGG	1 cut(s)	118
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.