Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0016762

Physical Location & Seq

Genomic Coordinates Reverse (-)

35765975 .. 35767900

Gene Structure 1926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1274500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGAAGGTTAATATTCTCTTACTCATCTGTGTAGTTTCTGGCATTCTCGTGGCCTGCGAAGGAGGGCAGCTGAGGAAGTGTTTCTATGAAAAGACCTGTCCTTCGGCCGAGGATATCGTCAGAGATGTCACCTGGAACCATGTCTCCAGTAATCCCAGATTGCCTGCAAAGCTATTGAGAATGCATTTCCACGACTGTTTCGTCAGGGGTTGTGATGGCTCAATTTTGTTGAATTCAACAGCAAACAACACGGCAGAGAAGGCAGCAGTTCCAAACTTATCCTTGTCGGGTTTCGATGTCATCGACGATATCAAAGAAAATCTAGAGCAGAAGTGTCCAGGAGTTGTCTCTTGTGCTGACATCTTGGCTTTGGCTGCTAGGGACTCCGTTTCGTTCCAATACAATAAATCGATGTGGGAAGTGCTCACGGGGAGAAGAGACGGCACAATTTCTCTAGTTAGGGAGGCCTTGATTAACATTCCGGCACCTTTCTTCAATTTCACCCAACTCAAACAGAGTTTTGCCAGCAAGAATCTTACTGTGCATGACCTTGTGGTTTTATCAGGTGGACACACAATTGGAGTAGGCGGCTGCCCAAGCTTCAGCAACAGGCTCTACAACTTCACCGGAAAGGGTGATCAAGACCCTTCTTTGGATGCAACCTACGCTGAATTGCTGAAGACCAAATGCCGAAGCCTCAAAGACAATACAACATTCGTGGAAATGGATCCCGGTAGCGCTCGAAACTTTGACAGCAGCTACTACACCGTCGTCAAGCAGCACAAGGGTCTCTTCCAATCTGATGCAGCCCTTTTAACAAACAAGGGTGCCAGCAATATCGTCGCAGAATTGGAGGACCTTAACAAGTTCTTCACGGAGTTTGCACAGTCAATGAAAAGGATGGGAGCCGTTGAGGTCCTTACAGGCACTTCCGGCCAGATCAGGAAGAAATGTTGGGCTGTGAATTCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009266 GO:0009269 GO:0009409 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009628 GO:0009636 GO:0009651 GO:0009664 GO:0009987 GO:0010035 GO:0012505 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

325

Amino Acids

35.54

Weight (kDa)

7.96

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	40 - 283	1.6e-79	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016762)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26620
malus_domestica	MD03G1274400.v1.1 MD03G1274500.v1.1
prunus_persica	Prupe.8G251100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0295471
rosa_laevigata	RLG00000011798
rosa_multiflora	Rmu_co8105696.1_g000001 Rmu_ssc0000464.1_g000001
rosa_rugosa	Rorug06G0251200
rosa_samantha	Rh6AG364400 Rh6BG372700 Rh6CG379000 Rh6DG365400
rosa_wichuraiana	Rw6G031820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	200
AccB1I	GGYRCC	2 cut(s)	484, 827
AciI	CCGC	1 cut(s)	588
AclWI	GGATC	2 cut(s)	722, 735
AcoI	YGGCCR	2 cut(s)	105, 934
AcsI	RAATTY	2 cut(s)	232, 964
AcuI	CTGAAG	2 cut(s)	586, 698
AfeI	AGCGCT	1 cut(s)	739
AfiI	CCNNNNNNNGG	1 cut(s)	652
AgsI	TTSAA	3 cut(s)	232, 237, 496
AjnI	CCWGG	2 cut(s)	131, 337
AloI	GAACNNNNNNTCC	2 cut(s)	128, 160
AluBI	AGCT	4 cut(s)	70, 172, 600, 759
AluI	AGCT	4 cut(s)	70, 172, 600, 759
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	4 cut(s)	148, 352, 432, 794
AlwI	GGATC	2 cut(s)	722, 735
Aor51HI	AGCGCT	1 cut(s)	739
AoxI	GGCC	4 cut(s)	51, 105, 465, 934
ApeKI	GCWGC	7 cut(s)	67, 263, 374, 591, 756, 778, 806
ApoI	RAATTY	2 cut(s)	232, 964
ArsI	GACNNNNNNTTYG	2 cut(s)	85, 117
Asp700I	GAANNNNTTC	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	740
AspS9I	GGNCC	2 cut(s)	856, 916
AsuC2I	CCSGG	1 cut(s)	732
AsuHPI	GGTGA	4 cut(s)	121, 493, 616, 647
AvaII	GGWCC	2 cut(s)	856, 916
BamHI	GGATCC	1 cut(s)	727
BanI	GGYRCC	2 cut(s)	484, 827
BauI	CACGAG	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	686
Bbv12I	GWGCWC	1 cut(s)	426
BbvCI	CCTCAGC	1 cut(s)	71
BbvI	GCAGC	7 cut(s)	79, 275, 361, 578, 768, 790, 818
BccI	CCATC	2 cut(s)	209, 895
BceAI	ACGGC	3 cut(s)	267, 457, 893
BcgI	CGANNNNNNTGC	2 cut(s)	823, 857
BciT130I	CCWGG	2 cut(s)	133, 339
BclI	TGATCA	1 cut(s)	637
BcnI	CCSGG	1 cut(s)	732
BcoDI	GTCTC	4 cut(s)	148, 352, 432, 794
BfaI	CTAG	3 cut(s)	323, 378, 455
BfoI	RGCGCY	1 cut(s)	741
BisI	GCNGC	8 cut(s)	68, 264, 375, 589, 592, 757, 779, 807
BlsI	GCNGC	8 cut(s)	69, 265, 376, 590, 593, 758, 780, 808
Bme1390I	CCNGG	3 cut(s)	133, 339, 732
Bme18I	GGWCC	2 cut(s)	856, 916
BmgT120I	GGNCC	2 cut(s)	856, 916
BmiI	GGNNCC	5 cut(s)	137, 486, 729, 829, 907
BmrFI	CCNGG	3 cut(s)	133, 339, 732
BmsI	GCATC	2 cut(s)	646, 793
BpiI	GAAGAC	1 cut(s)	686
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	732
Bsa29I	ATCGAT	1 cut(s)	410
BsaI	GGTCTC	1 cut(s)	794
BsaJI	CCNNGG	1 cut(s)	108
BsaWI	WCCGGW	1 cut(s)	626
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	1 cut(s)	652
Bse1I	ACTGG	1 cut(s)	147
BseBI	CCWGG	2 cut(s)	133, 339
BseCI	ATCGAT	1 cut(s)	410
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	2 cut(s)	661, 906
BseLI	CCNNNNNNNGG	1 cut(s)	652
BseMII	CTCAG	1 cut(s)	62
BseNI	ACTGG	1 cut(s)	147
BseX3I	CGGCCG	1 cut(s)	105
BseXI	GCAGC	7 cut(s)	79, 275, 361, 578, 768, 790, 818
Bsh1285I	CGRYCG	1 cut(s)	108
BshFI	GGCC	4 cut(s)	53, 107, 467, 936
BshNI	GGYRCC	2 cut(s)	484, 827
BshVI	ATCGAT	1 cut(s)	410
BsiEI	CGRYCG	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	426
BsiSI	CCGG	4 cut(s)	482, 627, 732, 933
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	1 cut(s)	652
BsmAI	GTCTC	4 cut(s)	148, 352, 432, 794
BsmBI	CGTCTC	1 cut(s)	432
BsmFI	GGGAC	1 cut(s)	395
BsmI	GAATGC	2 cut(s)	42, 186
BsnI	GGCC	4 cut(s)	53, 107, 467, 936
Bso31I	GGTCTC	1 cut(s)	794
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp143I	GATC	3 cut(s)	637, 727, 939
BspACI	CCGC	1 cut(s)	588
BspANI	GGCC	4 cut(s)	53, 107, 467, 936
BspCNI	CTCAG	1 cut(s)	63
BspDI	ATCGAT	1 cut(s)	410
BspLI	GGNNCC	5 cut(s)	137, 486, 729, 829, 907
BspPI	GGATC	2 cut(s)	722, 735
BspT107I	GGYRCC	2 cut(s)	484, 827
BspTNI	GGTCTC	1 cut(s)	794
BsrI	ACTGG	1 cut(s)	147
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	3 cut(s)	637, 727, 939
BssSI	CACGAG	1 cut(s)	47
Bst2BI	CACGAG	1 cut(s)	47
Bst2UI	CCWGG	2 cut(s)	133, 339
Bst4CI	ACNGT	4 cut(s)	197, 541, 769, 888
Bst6I	CTCTTC	2 cut(s)	430, 797
BstC8I	GCNNGC	4 cut(s)	55, 165, 526, 832
BstDEI	CTNAG	1 cut(s)	71
BstF5I	GGATG	2 cut(s)	661, 906
BstH2I	RGCGCY	1 cut(s)	741
BstHHI	GCGC	1 cut(s)	740
BstKTI	GATC	3 cut(s)	640, 730, 942
BstMAI	GTCTC	4 cut(s)	148, 352, 432, 794
BstMBI	GATC	3 cut(s)	637, 727, 939
BstMCI	CGRYCG	1 cut(s)	108
BstMWI	GCNNNNNNNGC	6 cut(s)	169, 260, 374, 597, 665, 933
BstNI	CCWGG	2 cut(s)	133, 339
BstSCI	CCNGG	3 cut(s)	131, 337, 730
BstV1I	GCAGC	7 cut(s)	79, 275, 361, 578, 768, 790, 818
BstV2I	GAAGAC	1 cut(s)	686
BstX2I	RGATCY	1 cut(s)	727
BstYI	RGATCY	1 cut(s)	727
BstZI	CGGCCG	1 cut(s)	105
Bsu15I	ATCGAT	1 cut(s)	410
BsuRI	GGCC	4 cut(s)	53, 107, 467, 936
BsuTUI	ATCGAT	1 cut(s)	410
BtsCI	GGATG	2 cut(s)	661, 906
Cac8I	GCNNGC	4 cut(s)	55, 165, 526, 832
CfoI	GCGC	1 cut(s)	740
Cfr13I	GGNCC	2 cut(s)	856, 916
ClaI	ATCGAT	1 cut(s)	410
CspCI	CAANNNNNGTGG	2 cut(s)	699, 734
CviAII	CATG	2 cut(s)	140, 545
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	3 cut(s)	639, 729, 941
DpnII	GATC	3 cut(s)	637, 727, 939
DrdI	GACNNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	200
EaeI	YGGCCR	2 cut(s)	105, 934
EagI	CGGCCG	1 cut(s)	105
Eam1104I	CTCTTC	2 cut(s)	430, 797
EarI	CTCTTC	2 cut(s)	430, 797
EclXI	CGGCCG	1 cut(s)	105
Eco147I	AGGCCT	1 cut(s)	467
Eco31I	GGTCTC	1 cut(s)	794
Eco32I	GATATC	2 cut(s)	115, 310
Eco47I	GGWCC	2 cut(s)	856, 916
Eco47III	AGCGCT	1 cut(s)	739
Eco52I	CGGCCG	1 cut(s)	105
Eco57I	CTGAAG	2 cut(s)	586, 698
EcoO109I	RGGNCCY	2 cut(s)	856, 916
EcoRI	GAATTC	2 cut(s)	232, 964
EcoRII	CCWGG	2 cut(s)	131, 337
EcoRV	GATATC	2 cut(s)	115, 310
EcoT22I	ATGCAT	1 cut(s)	186
Esp3I	CGTCTC	1 cut(s)	432
FaeI	CATG	2 cut(s)	143, 548
FaiI	YATR	3 cut(s)	87, 141, 546
FalI	AAGNNNNNCTT	2 cut(s)	776, 808
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	2 cut(s)	139, 544
FbaI	TGATCA	1 cut(s)	637
Fnu4HI	GCNGC	8 cut(s)	68, 264, 375, 589, 592, 757, 779, 807
FokI	GGATG	2 cut(s)	668, 913
Fsp4HI	GCNGC	8 cut(s)	68, 264, 375, 589, 592, 757, 779, 807
FspBI	CTAG	3 cut(s)	323, 378, 455
GlaI	GCGC	1 cut(s)	739
GluI	GCNGC	8 cut(s)	68, 264, 375, 589, 592, 757, 779, 807
GsuI	CTGGAG	1 cut(s)	130
HaeII	RGCGCY	1 cut(s)	741
HaeIII	GGCC	4 cut(s)	53, 107, 467, 936
HapII	CCGG	4 cut(s)	482, 627, 732, 933
HhaI	GCGC	1 cut(s)	740
Hin1II	CATG	2 cut(s)	143, 548
Hin6I	GCGC	1 cut(s)	738
HinP1I	GCGC	1 cut(s)	738
HindIII	AAGCTT	1 cut(s)	598
HinfI	GANTC	2 cut(s)	383, 532
HpaII	CCGG	4 cut(s)	482, 627, 732, 933
HphI	GGTGA	4 cut(s)	121, 493, 616, 647
Hpy166II	GTNNAC	1 cut(s)	569
Hpy188I	TCNGA	2 cut(s)	122, 802
Hpy188III	TCNNGA	3 cut(s)	323, 641, 943
Hpy8I	GTNNAC	1 cut(s)	569
Hpy99I	CGWCG	3 cut(s)	308, 773, 845
HpyAV	CCTTC	4 cut(s)	53, 111, 253, 657
HpyCH4III	ACNGT	4 cut(s)	197, 541, 769, 888
HpyCH4V	TGCA	6 cut(s)	167, 184, 544, 659, 806, 884
HpyF10VI	GCNNNNNNNGC	6 cut(s)	169, 260, 374, 597, 665, 933
HpyF3I	CTNAG	1 cut(s)	71
Hsp92II	CATG	2 cut(s)	143, 548
HspAI	GCGC	1 cut(s)	738
Ksp22I	TGATCA	1 cut(s)	637
Kzo9I	GATC	3 cut(s)	637, 727, 939
LmnI	GCTCC	1 cut(s)	905
Lsp1109I	GCAGC	7 cut(s)	79, 275, 361, 578, 768, 790, 818
LweI	GCATC	2 cut(s)	646, 793
MaeI	CTAG	3 cut(s)	323, 378, 455
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	3 cut(s)	639, 729, 941
MboI	GATC	3 cut(s)	637, 727, 939
MboII	GAAGA	6 cut(s)	447, 484, 691, 784, 862, 958
MfeI	CAATTG	1 cut(s)	576
MflI	RGATCY	1 cut(s)	727
MhlI	GDGCHC	1 cut(s)	426
MluCI	AATT	9 cut(s)	222, 232, 447, 496, 576, 671, 848, 964, 970
MlyI	GAGTC	1 cut(s)	377
MnlI	CCTC	7 cut(s)	56, 66, 103, 457, 707, 847, 907
Mph1103I	ATGCAT	1 cut(s)	186
MroXI	GAANNNNTTC	1 cut(s)	80
MseI	TTAA	5 cut(s)	9, 474, 815, 861, 973
MslI	CAYNNNNRTG	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	70
MspI	CCGG	4 cut(s)	482, 627, 732, 933
MspR9I	CCNGG	3 cut(s)	133, 339, 732
MunI	CAATTG	1 cut(s)	576
Mva1269I	GAATGC	2 cut(s)	42, 186
MvaI	CCWGG	2 cut(s)	133, 339
MwoI	GCNNNNNNNGC	6 cut(s)	169, 260, 374, 597, 665, 933
NciI	CCSGG	1 cut(s)	732
NdeII	GATC	3 cut(s)	637, 727, 939
NlaIII	CATG	2 cut(s)	143, 548
NlaIV	GGNNCC	5 cut(s)	137, 486, 729, 829, 907
NmeAIII	GCCGAG	1 cut(s)	133
NmuCI	GTSAC	1 cut(s)	127
NsiI	ATGCAT	1 cut(s)	186
PceI	AGGCCT	1 cut(s)	467
PcsI	WCGNNNNNNNCGW	3 cut(s)	54, 198, 300
PctI	GAATGC	2 cut(s)	42, 186
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	532
PfoI	TCCNGGA	1 cut(s)	337
PkrI	GCNGC	8 cut(s)	69, 265, 376, 590, 593, 758, 780, 808
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
PpuMI	RGGWCCY	2 cut(s)	856, 916
Psp5II	RGGWCCY	2 cut(s)	856, 916
Psp6I	CCWGG	2 cut(s)	131, 337
PspGI	CCWGG	2 cut(s)	131, 337
PspN4I	GGNNCC	5 cut(s)	137, 486, 729, 829, 907
PspPI	GGNCC	2 cut(s)	856, 916
PspPPI	RGGWCCY	2 cut(s)	856, 916
PsuI	RGATCY	1 cut(s)	727
PvuII	CAGCTG	1 cut(s)	70
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	5 cut(s)	9, 474, 815, 861, 973
SatI	GCNGC	8 cut(s)	68, 264, 375, 589, 592, 757, 779, 807
Sau3AI	GATC	3 cut(s)	637, 727, 939
Sau96I	GGNCC	2 cut(s)	856, 916
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	3 cut(s)	133, 339, 732
SduI	GDGCHC	1 cut(s)	426
SfaNI	GCATC	2 cut(s)	646, 793
SinI	GGWCC	2 cut(s)	856, 916
SmiMI	CAYNNNNRTG	1 cut(s)	47
Sse9I	AATT	9 cut(s)	222, 232, 447, 496, 576, 671, 848, 964, 970
SseBI	AGGCCT	1 cut(s)	467
SsiI	CCGC	1 cut(s)	588
SspI	AATATT	1 cut(s)	13
SspMI	CTAG	3 cut(s)	323, 378, 455
StuI	AGGCCT	1 cut(s)	467
StyD4I	CCNGG	3 cut(s)	131, 337, 730
TaaI	ACNGT	4 cut(s)	197, 541, 769, 888
TaqI	TCGA	4 cut(s)	294, 303, 410, 742
TasI	AATT	9 cut(s)	222, 232, 447, 496, 576, 671, 848, 964, 970
TauI	GCSGC	1 cut(s)	591
TfiI	GAWTC	1 cut(s)	532
Tru1I	TTAA	5 cut(s)	9, 474, 815, 861, 973
Tru9I	TTAA	5 cut(s)	9, 474, 815, 861, 973
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	7 cut(s)	67, 263, 374, 591, 756, 778, 806
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	3 cut(s)	17, 102, 908
TspGWI	ACGGA	2 cut(s)	376, 890
VpaK11BI	GGWCC	2 cut(s)	856, 916
XapI	RAATTY	2 cut(s)	232, 964
XbaI	TCTAGA	1 cut(s)	322
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	3 cut(s)	323, 378, 455
Zsp2I	ATGCAT	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.