Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000464.1

Orthogroup ID

OG0016762

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 758

Gene Structure 758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000464.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 383 bp

ggggttgcttaggtggtagcctgaggaaaggtttctacaaacaaacatgtcctctagcagagcagattgtcaagaacgccacgtggaaccacgtctccgccaatcccaacttgccagcaaagttgctgaggatgcatttccatgactgttttgtaaggggatgcgaggcctcggttttgttgagctcttcagcaaataacactgcagagagggattcgttcccaaactcttctttggagggttttgatgttattgatgatataaaagaacagttggagaaggcatgcccaggagttgtatcttgtgctgatattcttgcgttggcgactagggattctatgtcattccaagtaggtgcattgaacaagtgcagtactagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009266 GO:0009269 GO:0009409 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009628 GO:0009636 GO:0009651 GO:0009664 GO:0009987 GO:0010035 GO:0012505 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

126

Amino Acids

13.57

Weight (kDa)

6.31

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016762)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26620
malus_domestica	MD03G1274400.v1.1 MD03G1274500.v1.1
prunus_persica	Prupe.8G251100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0295471
rosa_laevigata	RLG00000011798
rosa_multiflora	Rmu_co8105696.1_g000001 Rmu_ssc0000464.1_g000001
rosa_rugosa	Rorug06G0251200
rosa_samantha	Rh6AG364400 Rh6BG372700 Rh6CG379000 Rh6DG365400
rosa_wichuraiana	Rw6G031820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	173
AcvI	CACGTG	1 cut(s)	83
AfaI	GTAC	1 cut(s)	375
AflIII	ACRYGT	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	363
AjiI	CACGTC	1 cut(s)	93
AjnI	CCWGG	1 cut(s)	288
AloI	GAACNNNNNNTCC	2 cut(s)	79, 111
AluBI	AGCT	2 cut(s)	185, 380
AluI	AGCT	2 cut(s)	185, 380
Alw21I	GWGCWC	1 cut(s)	187
Alw26I	GTCTC	1 cut(s)	99
AoxI	GGCC	1 cut(s)	167
Asp700I	GAANNNNTTC	1 cut(s)	31
AxyI	CCTNAGG	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	187
BbrPI	CACGTG	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	187
BbvCI	CCTCAGC	1 cut(s)	127
BciT130I	CCWGG	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	99
BfaI	CTAG	4 cut(s)	55, 329, 377, 381
BfmI	CTRYAG	1 cut(s)	203
BmcAI	AGTACT	1 cut(s)	375
Bme1390I	CCNGG	1 cut(s)	290
BmgBI	CACGTC	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	290
BmsI	GCATC	2 cut(s)	122, 151
Bpu10I	CCTNAGC	2 cut(s)	9, 127
BsaAI	YACGTR	1 cut(s)	83
BsaJI	CCNNGG	2 cut(s)	170, 288
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bse21I	CCTNAGG	1 cut(s)	22
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	2 cut(s)	170, 288
BseGI	GGATG	2 cut(s)	137, 166
BseMII	CTCAG	2 cut(s)	13, 118
BshFI	GGCC	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	187
BsmAI	GTCTC	1 cut(s)	99
BsmBI	CGTCTC	1 cut(s)	99
BsnI	GGCC	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	187
BspACI	CCGC	1 cut(s)	98
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	2 cut(s)	14, 119
BspLI	GGNNCC	1 cut(s)	88
BspMAI	CTGCAG	1 cut(s)	207
BspQI	GCTCTTC	1 cut(s)	192
BssECI	CCNNGG	2 cut(s)	170, 288
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	2 cut(s)	148, 272
Bst6I	CTCTTC	2 cut(s)	192, 234
BstBAI	YACGTR	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	116, 285
BstDEI	CTNAG	3 cut(s)	9, 22, 127
BstF5I	GGATG	2 cut(s)	137, 166
BstMAI	GTCTC	1 cut(s)	99
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 377
BstNI	CCWGG	1 cut(s)	290
BstNSI	RCATGY	2 cut(s)	50, 287
BstSCI	CCNGG	1 cut(s)	288
BstSFI	CTRYAG	1 cut(s)	203
Bsu36I	CCTNAGG	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	169
BtrI	CACGTC	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	137, 166
BtsI	GCAGTG	1 cut(s)	200
BtsIMutI	CAGTG	1 cut(s)	200
Cac8I	GCNNGC	2 cut(s)	116, 285
Csp6I	GTAC	1 cut(s)	374
CviAII	CATG	3 cut(s)	47, 142, 284
CviJI	RGCY	4 cut(s)	20, 169, 185, 380
CviKI_1	RGCY	4 cut(s)	20, 169, 185, 380
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	3 cut(s)	9, 22, 127
Eam1104I	CTCTTC	2 cut(s)	192, 234
EarI	CTCTTC	2 cut(s)	192, 234
EciI	GGCGGA	1 cut(s)	87
Ecl136II	GAGCTC	1 cut(s)	185
Eco147I	AGGCCT	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	187
Eco53kI	GAGCTC	1 cut(s)	185
Eco57I	CTGAAG	1 cut(s)	173
Eco72I	CACGTG	1 cut(s)	83
Eco81I	CCTNAGG	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	288
EcoT22I	ATGCAT	1 cut(s)	137
EcoT38I	GRGCYC	1 cut(s)	187
Esp3I	CGTCTC	1 cut(s)	99
FaeI	CATG	3 cut(s)	50, 145, 287
FaiI	YATR	5 cut(s)	48, 143, 262, 285, 340
FatI	CATG	3 cut(s)	46, 141, 283
FokI	GGATG	2 cut(s)	144, 173
FriOI	GRGCYC	1 cut(s)	187
FspBI	CTAG	4 cut(s)	55, 329, 377, 381
HaeIII	GGCC	1 cut(s)	169
Hin1II	CATG	3 cut(s)	50, 145, 287
HinfI	GANTC	2 cut(s)	214, 334
Hpy188III	TCNNGA	1 cut(s)	72
HpyAV	CCTTC	1 cut(s)	273
HpyCH4III	ACNGT	2 cut(s)	148, 272
HpyCH4IV	ACGT	2 cut(s)	82, 92
HpyCH4V	TGCA	4 cut(s)	135, 205, 358, 371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 377
HpyF3I	CTNAG	3 cut(s)	9, 22, 127
HpySE526I	ACGT	2 cut(s)	82, 92
Hsp92II	CATG	3 cut(s)	50, 145, 287
LguI	GCTCTTC	1 cut(s)	192
LpnPI	CCDG	4 cut(s)	34, 128, 275, 302
LweI	GCATC	2 cut(s)	122, 151
MaeI	CTAG	4 cut(s)	55, 329, 377, 381
MaeII	ACGT	2 cut(s)	82, 92
MboII	GAAGA	2 cut(s)	179, 221
MhlI	GDGCHC	1 cut(s)	187
MmeI	TCCRAC	1 cut(s)	254
MnlI	CCTC	7 cut(s)	17, 62, 122, 159, 180, 203, 231
Mph1103I	ATGCAT	1 cut(s)	137
MroXI	GAANNNNTTC	1 cut(s)	31
MslI	CAYNNNNRTG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	2 cut(s)	132, 377
NlaIII	CATG	3 cut(s)	50, 145, 287
NlaIV	GGNNCC	1 cut(s)	88
NsiI	ATGCAT	1 cut(s)	137
NspI	RCATGY	2 cut(s)	50, 287
PaeI	GCATGC	1 cut(s)	287
PceI	AGGCCT	1 cut(s)	169
PciI	ACATGT	1 cut(s)	46
PciSI	GCTCTTC	1 cut(s)	192
PdmI	GAANNNNTTC	1 cut(s)	31
PfeI	GAWTC	2 cut(s)	214, 334
PmaCI	CACGTG	1 cut(s)	83
PmlI	CACGTG	1 cut(s)	83
Ppu21I	YACGTR	1 cut(s)	83
PscI	ACATGT	1 cut(s)	46
Psp124BI	GAGCTC	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	288
PspCI	CACGTG	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	88
PstI	CTGCAG	1 cut(s)	207
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
RseI	CAYNNNNRTG	1 cut(s)	140
SacI	GAGCTC	1 cut(s)	187
SapI	GCTCTTC	1 cut(s)	192
ScaI	AGTACT	1 cut(s)	375
ScrFI	CCNGG	1 cut(s)	290
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	7 cut(s)	15, 33, 85, 95, 187, 357, 382
SfaNI	GCATC	2 cut(s)	122, 151
SfcI	CTRYAG	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	140
SphI	GCATGC	1 cut(s)	287
SseBI	AGGCCT	1 cut(s)	169
SsiI	CCGC	1 cut(s)	98
SspMI	CTAG	4 cut(s)	55, 329, 377, 381
SstI	GAGCTC	1 cut(s)	187
StuI	AGGCCT	1 cut(s)	169
StyD4I	CCNGG	1 cut(s)	288
TaaI	ACNGT	2 cut(s)	148, 272
TaiI	ACGT	2 cut(s)	85, 95
TatI	WGTACW	1 cut(s)	373
TfiI	GAWTC	2 cut(s)	214, 334
TscAI	CASTG	1 cut(s)	207
TspRI	CASTG	1 cut(s)	207
XceI	RCATGY	2 cut(s)	50, 287
XmnI	GAANNNNTTC	1 cut(s)	31
XspI	CTAG	4 cut(s)	55, 329, 377, 381
ZrmI	AGTACT	1 cut(s)	375
Zsp2I	ATGCAT	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.