RLG00000011798

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016762
Physical Location & Seq
Forward (+)
12758737 .. 12760186
1450 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011798

Sequence Viewer

Length: 795 bp
ATGAAAACCAATAACATCAATTTGATCTTATTGGTCTGTGTAGTTGTTTGCATTAATCTAGGTGGTTGCTTAGGTGGTAGCCTGATGAAAGGTTTCTACAAACAAACATGTCCTCTAGCAGAGCAGATTGTCAAGAACGCCACGTGGAACCACGTCTCCGCCAATTCCAACTTGCCAGCAAAGTTGGTAAGGATGCATTTCCATGACTGTTTTGTAAGGTTCAAGAAATCACTATGGGATGTTCTTACCGGTAGACGAGATGGCACTGTTTCAATAGCAAATGAGGTCTTACGTAACCTTCCAACTCCTTTCTTCAACTTCACTCAACTCAAACAAAGTTTTGCAAATAGAGGTCTCACTGTGCAAGATCTTGTGGTACTGTCAGGTGGACACAGCATTGGCGTTGGGCATTGCAATTTATTCAGCAACCGGCTCTACAACTTCACCGGAAAAGGAGATCAAGACCCGTCTATGGACTCCACATATGCTGCCTTGTTGAAGACCCAATGCCAAGGCCCTCGTGACACAACCACTGCTGTAGAACTAGACCCTGGAAGCTTTCAAAAGTTTGACAATCACTACTACACAAACCTTAAGCAGAATAAGGGTCTCTTCCAATCCGACGCTGCTCTTCTAACAAACAAAGTGTCAAGCAATGCTGTTCAGAAATTGCTCAAGGCAAATGATTTCTTCACGGAGTTTGGTCAGTCTATGAAGAGGATGGGAGCAATTGGGGTCCTTACGGGCACATCTGGGCAGATCAGGAAGCAGTGTGGGGTTGTAAATTCAAACTAA

Protein Analysis

265

Amino Acids

29.05

Weight (kDa)

9.45

Isoelectric Point (pI)

32.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 78 - 224 5.4e-44 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016762)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g26620
malus_domestica MD03G1274400.v1.1 MD03G1274500.v1.1
prunus_persica Prupe.8G251100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0295471
rosa_laevigata RLG00000011798
rosa_multiflora Rmu_co8105696.1_g000001 Rmu_ssc0000464.1_g000001
rosa_rugosa Rorug06G0251200
rosa_samantha Rh6AG364400 Rh6BG372700 Rh6CG379000 Rh6DG365400
rosa_wichuraiana Rw6G031820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 253
AciI CCGC 1 cut(s) 159
AcsI RAATTY 1 cut(s) 784
AcvI CACGTG 1 cut(s) 144
AfaI GTAC 1 cut(s) 378
AfiI CCNNNNNNNGG 1 cut(s) 472
AflII CTTAAG 1 cut(s) 593
AflIII ACRYGT 1 cut(s) 107
AgeI ACCGGT 1 cut(s) 248
AgsI TTSAA 6 cut(s) 223, 273, 316, 499, 563, 789
AjiI CACGTC 1 cut(s) 154
AjnI CCWGG 1 cut(s) 550
AloI GAACNNNNNNTCC 2 cut(s) 140, 172
AluBI AGCT 1 cut(s) 558
AluI AGCT 1 cut(s) 558
Alw26I GTCTC 3 cut(s) 160, 359, 614
AoxI GGCC 1 cut(s) 514
ApeKI GCWGC 2 cut(s) 488, 626
ApoI RAATTY 1 cut(s) 784
ArsI GACNNNNNNTTYG 2 cut(s) 632, 664
AseI ATTAAT 1 cut(s) 54
AsiGI ACCGGT 1 cut(s) 248
Asp700I GAANNNNTTC 1 cut(s) 92
AspS9I GGNCC 2 cut(s) 515, 736
AsuHPI GGTGA 1 cut(s) 436
AvaII GGWCC 1 cut(s) 736
BaeGI GKGCMC 1 cut(s) 749
BauI CACGAG 1 cut(s) 519
BbrPI CACGTG 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 506
BbvI GCAGC 2 cut(s) 475, 613
BccI CCATC 2 cut(s) 254, 715
BciT130I CCWGG 1 cut(s) 552
BcoDI GTCTC 3 cut(s) 160, 359, 614
BfaI CTAG 3 cut(s) 59, 116, 545
BfmI CTRYAG 1 cut(s) 537
BfrI CTTAAG 1 cut(s) 593
BglII AGATCT 1 cut(s) 367
BisI GCNGC 2 cut(s) 489, 627
BlsI GCNGC 2 cut(s) 490, 628
Bme1390I CCNGG 1 cut(s) 552
Bme18I GGWCC 1 cut(s) 736
BmgBI CACGTC 1 cut(s) 154
BmgT120I GGNCC 2 cut(s) 515, 736
BmiI GGNNCC 2 cut(s) 149, 737
BmrFI CCNGG 1 cut(s) 552
BmsI GCATC 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 506
Bpu10I CCTNAGC 1 cut(s) 70
BpuEI CTTGAG 1 cut(s) 659
BsaAI YACGTR 2 cut(s) 144, 293
BsaI GGTCTC 2 cut(s) 359, 614
BsaJI CCNNGG 2 cut(s) 511, 550
BsaWI WCCGGW 2 cut(s) 248, 446
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 1 cut(s) 472
Bse118I RCCGGY 2 cut(s) 248, 429
Bse3DI GCAATG 2 cut(s) 409, 661
BseBI CCWGG 1 cut(s) 552
BseDI CCNNGG 2 cut(s) 511, 550
BseGI GGATG 3 cut(s) 198, 244, 726
BseLI CCNNNNNNNGG 1 cut(s) 472
BseMI GCAATG 2 cut(s) 409, 661
BseSI GKGCMC 1 cut(s) 749
BseXI GCAGC 2 cut(s) 475, 613
BshFI GGCC 1 cut(s) 516
BshTI ACCGGT 1 cut(s) 248
BsiSI CCGG 3 cut(s) 249, 430, 447
BslI CCNNNNNNNGG 1 cut(s) 472
BsmAI GTCTC 3 cut(s) 160, 359, 614
BsmBI CGTCTC 1 cut(s) 160
BsnI GGCC 1 cut(s) 516
Bso31I GGTCTC 2 cut(s) 359, 614
Bsp1286I GDGCHC 1 cut(s) 749
Bsp143I GATC 4 cut(s) 24, 367, 457, 759
BspACI CCGC 1 cut(s) 159
BspANI GGCC 1 cut(s) 516
BspLI GGNNCC 2 cut(s) 149, 737
BspQI GCTCTTC 1 cut(s) 636
BspTI CTTAAG 1 cut(s) 593
BspTNI GGTCTC 2 cut(s) 359, 614
BsrDI GCAATG 2 cut(s) 409, 661
BsrFI RCCGGY 2 cut(s) 248, 429
BssAI RCCGGY 2 cut(s) 248, 429
BssECI CCNNGG 2 cut(s) 511, 550
BssMI GATC 4 cut(s) 24, 367, 457, 759
BssSI CACGAG 1 cut(s) 519
BssT1I CCWWGG 1 cut(s) 511
Bst2BI CACGAG 1 cut(s) 519
Bst2UI CCWGG 1 cut(s) 552
Bst4CI ACNGT 4 cut(s) 209, 268, 361, 381
Bst6I CTCTTC 3 cut(s) 617, 636, 710
BstAFI CTTAAG 1 cut(s) 593
BstBAI YACGTR 2 cut(s) 144, 293
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 70
BstF5I GGATG 3 cut(s) 198, 244, 726
BstKTI GATC 4 cut(s) 27, 370, 460, 762
BstMAI GTCTC 3 cut(s) 160, 359, 614
BstMBI GATC 4 cut(s) 24, 367, 457, 759
BstNI CCWGG 1 cut(s) 552
BstNSI RCATGY 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 550
BstSFI CTRYAG 1 cut(s) 537
BstSLI GKGCMC 1 cut(s) 749
BstSNI TACGTA 1 cut(s) 293
BstV1I GCAGC 2 cut(s) 475, 613
BstV2I GAAGAC 1 cut(s) 506
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BsuRI GGCC 1 cut(s) 516
BtrI CACGTC 1 cut(s) 154
BtsCI GGATG 3 cut(s) 198, 244, 726
BtsI GCAGTG 2 cut(s) 531, 776
BtsIMutI CAGTG 4 cut(s) 264, 357, 531, 776
Cac8I GCNNGC 1 cut(s) 177
Cfr10I RCCGGY 2 cut(s) 248, 429
Cfr13I GGNCC 2 cut(s) 515, 736
CseI GACGC 1 cut(s) 632
Csp6I GTAC 1 cut(s) 377
CspAI ACCGGT 1 cut(s) 248
CviAII CATG 2 cut(s) 108, 203
CviJI RGCY 4 cut(s) 81, 433, 516, 558
CviKI_1 RGCY 4 cut(s) 81, 433, 516, 558
CviQI GTAC 1 cut(s) 377
DdeI CTNAG 1 cut(s) 70
DpnI GATC 4 cut(s) 26, 369, 459, 761
DpnII GATC 4 cut(s) 24, 367, 457, 759
Eam1104I CTCTTC 3 cut(s) 617, 636, 710
EarI CTCTTC 3 cut(s) 617, 636, 710
EciI GGCGGA 1 cut(s) 148
Eco105I TACGTA 1 cut(s) 293
Eco130I CCWWGG 1 cut(s) 511
Eco31I GGTCTC 2 cut(s) 359, 614
Eco47I GGWCC 1 cut(s) 736
Eco72I CACGTG 1 cut(s) 144
EcoO109I RGGNCCY 2 cut(s) 515, 736
EcoRII CCWGG 1 cut(s) 550
EcoT14I CCWWGG 1 cut(s) 511
EcoT22I ATGCAT 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 511
Esp3I CGTCTC 1 cut(s) 160
FaeI CATG 2 cut(s) 111, 206
FaiI YATR 7 cut(s) 109, 204, 235, 473, 484, 486, 713
FalI AAGNNNNNCTT 2 cut(s) 596, 628
FatI CATG 2 cut(s) 107, 202
FauNDI CATATG 1 cut(s) 484
FblI GTMKAC 1 cut(s) 253
Fnu4HI GCNGC 2 cut(s) 489, 627
FokI GGATG 3 cut(s) 205, 251, 733
Fsp4HI GCNGC 2 cut(s) 489, 627
FspBI CTAG 3 cut(s) 59, 116, 545
GluI GCNGC 2 cut(s) 489, 627
HaeIII GGCC 1 cut(s) 516
HapII CCGG 3 cut(s) 249, 430, 447
HgaI GACGC 1 cut(s) 632
Hin1II CATG 2 cut(s) 111, 206
HindIII AAGCTT 1 cut(s) 556
HinfI GANTC 1 cut(s) 476
HpaII CCGG 3 cut(s) 249, 430, 447
HphI GGTGA 1 cut(s) 436
Hpy166II GTNNAC 2 cut(s) 254, 389
Hpy188I TCNGA 2 cut(s) 622, 666
Hpy188III TCNNGA 5 cut(s) 133, 223, 461, 521, 763
Hpy8I GTNNAC 2 cut(s) 254, 389
Hpy99I CGWCG 1 cut(s) 626
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 4 cut(s) 209, 268, 361, 381
HpyCH4IV ACGT 3 cut(s) 143, 153, 292
HpyCH4V TGCA 5 cut(s) 51, 196, 344, 364, 414
HpyF3I CTNAG 1 cut(s) 70
HpySE526I ACGT 3 cut(s) 143, 153, 292
Hsp92II CATG 2 cut(s) 111, 206
Kzo9I GATC 4 cut(s) 24, 367, 457, 759
LguI GCTCTTC 1 cut(s) 636
LmnI GCTCC 1 cut(s) 725
Lsp1109I GCAGC 2 cut(s) 475, 613
LweI GCATC 1 cut(s) 183
MaeI CTAG 3 cut(s) 59, 116, 545
MaeII ACGT 3 cut(s) 143, 153, 292
MaeIII GTNAC 2 cut(s) 293, 521
MalI GATC 4 cut(s) 26, 369, 459, 761
MboI GATC 4 cut(s) 24, 367, 457, 759
MboII GAAGA 6 cut(s) 304, 511, 604, 623, 682, 727
MfeI CAATTG 1 cut(s) 729
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 1 cut(s) 749
MluCI AATT 6 cut(s) 19, 163, 415, 668, 729, 784
MlyI GAGTC 1 cut(s) 470
MmeI TCCRAC 3 cut(s) 192, 326, 645
MnlI CCTC 5 cut(s) 123, 277, 344, 528, 711
Mph1103I ATGCAT 1 cut(s) 198
MroXI GAANNNNTTC 1 cut(s) 92
MseI TTAA 2 cut(s) 54, 594
MslI CAYNNNNRTG 1 cut(s) 201
MspCI CTTAAG 1 cut(s) 593
MspI CCGG 3 cut(s) 249, 430, 447
MspR9I CCNGG 1 cut(s) 552
MunI CAATTG 1 cut(s) 729
MvaI CCWGG 1 cut(s) 552
NdeI CATATG 1 cut(s) 484
NdeII GATC 4 cut(s) 24, 367, 457, 759
NlaIII CATG 2 cut(s) 111, 206
NlaIV GGNNCC 2 cut(s) 149, 737
NmuCI GTSAC 1 cut(s) 521
NsiI ATGCAT 1 cut(s) 198
NspI RCATGY 1 cut(s) 111
PciI ACATGT 1 cut(s) 107
PciSI GCTCTTC 1 cut(s) 636
PdmI GAANNNNTTC 1 cut(s) 92
PinAI ACCGGT 1 cut(s) 248
PkrI GCNGC 2 cut(s) 490, 628
PleI GAGTC 1 cut(s) 470
PmaCI CACGTG 1 cut(s) 144
PmlI CACGTG 1 cut(s) 144
PpsI GAGTC 1 cut(s) 470
Ppu21I YACGTR 2 cut(s) 144, 293
PpuMI RGGWCCY 1 cut(s) 736
PscI ACATGT 1 cut(s) 107
PshBI ATTAAT 1 cut(s) 54
Psp5II RGGWCCY 1 cut(s) 736
Psp6I CCWGG 1 cut(s) 550
PspCI CACGTG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 550
PspN4I GGNNCC 2 cut(s) 149, 737
PspPI GGNCC 2 cut(s) 515, 736
PspPPI RGGWCCY 1 cut(s) 736
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 1 cut(s) 378
RsaNI GTAC 1 cut(s) 377
RseI CAYNNNNRTG 1 cut(s) 201
SapI GCTCTTC 1 cut(s) 636
SaqAI TTAA 2 cut(s) 54, 594
SatI GCNGC 2 cut(s) 489, 627
Sau3AI GATC 4 cut(s) 24, 367, 457, 759
Sau96I GGNCC 2 cut(s) 515, 736
SchI GAGTC 1 cut(s) 470
ScrFI CCNGG 1 cut(s) 552
SduI GDGCHC 1 cut(s) 749
SfaNI GCATC 1 cut(s) 183
SfcI CTRYAG 1 cut(s) 537
SinI GGWCC 1 cut(s) 736
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 2 cut(s) 593, 674
SmoI CTYRAG 2 cut(s) 593, 674
SnaBI TACGTA 1 cut(s) 293
Sse9I AATT 6 cut(s) 19, 163, 415, 668, 729, 784
SsiI CCGC 1 cut(s) 159
SspMI CTAG 3 cut(s) 59, 116, 545
StyD4I CCNGG 1 cut(s) 550
StyI CCWWGG 1 cut(s) 511
TaaI ACNGT 4 cut(s) 209, 268, 361, 381
TaiI ACGT 3 cut(s) 146, 156, 295
TasI AATT 6 cut(s) 19, 163, 415, 668, 729, 784
Tru1I TTAA 2 cut(s) 54, 594
Tru9I TTAA 2 cut(s) 54, 594
TscAI CASTG 4 cut(s) 271, 364, 538, 776
TseFI GTSAC 1 cut(s) 521
TseI GCWGC 2 cut(s) 488, 626
Tsp45I GTSAC 1 cut(s) 521
TspDTI ATGAA 3 cut(s) 17, 101, 728
TspGWI ACGGA 1 cut(s) 710
TspRI CASTG 4 cut(s) 271, 364, 538, 776
Vha464I CTTAAG 1 cut(s) 593
VpaK11BI GGWCC 1 cut(s) 736
VspI ATTAAT 1 cut(s) 54
XapI RAATTY 1 cut(s) 784
XceI RCATGY 1 cut(s) 111
XmiI GTMKAC 1 cut(s) 253
XmnI GAANNNNTTC 1 cut(s) 92
XspI CTAG 3 cut(s) 59, 116, 545
Zsp2I ATGCAT 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.