Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8105696.1

Orthogroup ID

OG0016762

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 432

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8105696.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 370 bp

caaccggctctacaacttcaccggaaaaggagatcaagacccgtctttggactccacatatgctgccttgttgaagacccaatgccaaggccctcgtgacacaaccactgctgtagaactagaccctggaagctttcaaaagtttgacaatcactactacacaaaccttaagcagaataagggtctcttccaatccgacgctgctcttctaacaaacaaagtctcaagcaatgctgttcagaaattgctcaaggcaaatgatttcttcacggagttcggtcagtctatgaagaggatgggagcaattggggtccttacgggcacatctgggcagattaggaagcagtgtggggttgtaaattcaaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009266 GO:0009269 GO:0009409 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009628 GO:0009636 GO:0009651 GO:0009664 GO:0009987 GO:0010035 GO:0012505 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

122

Amino Acids

13.38

Weight (kDa)

9.17

Isoelectric Point (pI)

25.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016762)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26620
malus_domestica	MD03G1274400.v1.1 MD03G1274500.v1.1
prunus_persica	Prupe.8G251100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0295471
rosa_laevigata	RLG00000011798
rosa_multiflora	Rmu_co8105696.1_g000001 Rmu_ssc0000464.1_g000001
rosa_rugosa	Rorug06G0251200
rosa_samantha	Rh6AG364400 Rh6BG372700 Rh6CG379000 Rh6DG365400
rosa_wichuraiana	Rw6G031820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	359
AfiI	CCNNNNNNNGG	1 cut(s)	47
AflII	CTTAAG	1 cut(s)	168
AgsI	TTSAA	3 cut(s)	74, 138, 364
AjnI	CCWGG	1 cut(s)	125
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
Alw26I	GTCTC	2 cut(s)	189, 227
AoxI	GGCC	1 cut(s)	89
ApeKI	GCWGC	2 cut(s)	63, 201
ApoI	RAATTY	1 cut(s)	359
AspS9I	GGNCC	2 cut(s)	90, 311
AsuHPI	GGTGA	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	311
BaeGI	GKGCMC	1 cut(s)	324
BauI	CACGAG	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	50, 188
BccI	CCATC	1 cut(s)	290
BciT130I	CCWGG	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	189, 227
BfaI	CTAG	1 cut(s)	120
BfmI	CTRYAG	1 cut(s)	112
BfrI	CTTAAG	1 cut(s)	168
BisI	GCNGC	2 cut(s)	64, 202
BlsI	GCNGC	2 cut(s)	65, 203
Bme1390I	CCNGG	1 cut(s)	127
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	2 cut(s)	90, 311
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	1 cut(s)	127
BpiI	GAAGAC	1 cut(s)	81
BpuEI	CTTGAG	2 cut(s)	209, 234
BsaI	GGTCTC	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	86, 125
BsaWI	WCCGGW	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
Bse118I	RCCGGY	1 cut(s)	4
Bse3DI	GCAATG	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	2 cut(s)	86, 125
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseMI	GCAATG	1 cut(s)	236
BseSI	GKGCMC	1 cut(s)	324
BseXI	GCAGC	2 cut(s)	50, 188
BshFI	GGCC	1 cut(s)	91
BsiSI	CCGG	2 cut(s)	5, 22
BslI	CCNNNNNNNGG	1 cut(s)	47
BsmAI	GTCTC	2 cut(s)	189, 227
BsnI	GGCC	1 cut(s)	91
Bso31I	GGTCTC	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	32
BspANI	GGCC	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	312
BspQI	GCTCTTC	1 cut(s)	211
BspTI	CTTAAG	1 cut(s)	168
BspTNI	GGTCTC	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	236
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	2 cut(s)	86, 125
BssMI	GATC	1 cut(s)	32
BssSI	CACGAG	1 cut(s)	94
BssT1I	CCWWGG	1 cut(s)	86
Bst2BI	CACGAG	1 cut(s)	94
Bst2UI	CCWGG	1 cut(s)	127
Bst6I	CTCTTC	3 cut(s)	192, 211, 285
BstAFI	CTTAAG	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	301
BstKTI	GATC	1 cut(s)	35
BstMAI	GTCTC	2 cut(s)	189, 227
BstMBI	GATC	1 cut(s)	32
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	125
BstSFI	CTRYAG	1 cut(s)	112
BstSLI	GKGCMC	1 cut(s)	324
BstV1I	GCAGC	2 cut(s)	50, 188
BstV2I	GAAGAC	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	301
BtsI	GCAGTG	2 cut(s)	106, 351
BtsIMutI	CAGTG	2 cut(s)	106, 351
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	2 cut(s)	90, 311
CseI	GACGC	1 cut(s)	207
CviJI	RGCY	3 cut(s)	8, 91, 133
CviKI_1	RGCY	3 cut(s)	8, 91, 133
DpnI	GATC	1 cut(s)	34
DpnII	GATC	1 cut(s)	32
Eam1104I	CTCTTC	3 cut(s)	192, 211, 285
EarI	CTCTTC	3 cut(s)	192, 211, 285
Eco130I	CCWWGG	1 cut(s)	86
Eco31I	GGTCTC	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	311
EcoO109I	RGGNCCY	2 cut(s)	90, 311
EcoRII	CCWGG	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	86
FaiI	YATR	3 cut(s)	59, 61, 288
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FauNDI	CATATG	1 cut(s)	59
Fnu4HI	GCNGC	2 cut(s)	64, 202
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	2 cut(s)	64, 202
FspBI	CTAG	1 cut(s)	120
GluI	GCNGC	2 cut(s)	64, 202
HaeIII	GGCC	1 cut(s)	91
HapII	CCGG	2 cut(s)	5, 22
HgaI	GACGC	1 cut(s)	207
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	1 cut(s)	51
HpaII	CCGG	2 cut(s)	5, 22
HphI	GGTGA	1 cut(s)	11
Hpy188I	TCNGA	2 cut(s)	197, 241
Hpy188III	TCNNGA	2 cut(s)	36, 96
Hpy99I	CGWCG	1 cut(s)	201
Kzo9I	GATC	1 cut(s)	32
LguI	GCTCTTC	1 cut(s)	211
LmnI	GCTCC	1 cut(s)	300
LpnPI	CCDG	5 cut(s)	18, 35, 112, 139, 313
Lsp1109I	GCAGC	2 cut(s)	50, 188
MaeI	CTAG	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	96
MalI	GATC	1 cut(s)	34
MboI	GATC	1 cut(s)	32
MboII	GAAGA	5 cut(s)	86, 179, 198, 257, 302
MfeI	CAATTG	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	3 cut(s)	243, 304, 359
MlyI	GAGTC	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	2 cut(s)	103, 286
MseI	TTAA	1 cut(s)	169
MspCI	CTTAAG	1 cut(s)	168
MspI	CCGG	2 cut(s)	5, 22
MspR9I	CCNGG	1 cut(s)	127
MunI	CAATTG	1 cut(s)	304
MvaI	CCWGG	1 cut(s)	127
NdeI	CATATG	1 cut(s)	59
NdeII	GATC	1 cut(s)	32
NlaIV	GGNNCC	1 cut(s)	312
NmuCI	GTSAC	1 cut(s)	96
PciSI	GCTCTTC	1 cut(s)	211
PkrI	GCNGC	2 cut(s)	65, 203
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
PpuMI	RGGWCCY	1 cut(s)	311
Psp5II	RGGWCCY	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	2 cut(s)	90, 311
PspPPI	RGGWCCY	1 cut(s)	311
SapI	GCTCTTC	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	169
SatI	GCNGC	2 cut(s)	64, 202
Sau3AI	GATC	1 cut(s)	32
Sau96I	GGNCC	2 cut(s)	90, 311
SchI	GAGTC	1 cut(s)	45
ScrFI	CCNGG	1 cut(s)	127
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	2 cut(s)	135, 169
SfcI	CTRYAG	1 cut(s)	112
SinI	GGWCC	1 cut(s)	311
SmlI	CTYRAG	3 cut(s)	168, 224, 249
SmoI	CTYRAG	3 cut(s)	168, 224, 249
Sse9I	AATT	3 cut(s)	243, 304, 359
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	125
StyI	CCWWGG	1 cut(s)	86
TaqII	GACCGA	1 cut(s)	267
TasI	AATT	3 cut(s)	243, 304, 359
Tru1I	TTAA	1 cut(s)	169
Tru9I	TTAA	1 cut(s)	169
TscAI	CASTG	2 cut(s)	113, 351
TseFI	GTSAC	1 cut(s)	96
TseI	GCWGC	2 cut(s)	63, 201
Tsp45I	GTSAC	1 cut(s)	96
TspDTI	ATGAA	1 cut(s)	303
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	2 cut(s)	113, 351
Vha464I	CTTAAG	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	311
XapI	RAATTY	1 cut(s)	359
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.