Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0016762

Physical Location & Seq

Genomic Coordinates Reverse (-)

56338962 .. 56339952

Gene Structure 991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG364400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAAAACCAATAACATCAATTTGATCTTATTGGTCTGTATAGTTGTTTGCATTAATCTAGGAGGTTGCTTGAGTGGTAGCCTGAGGAAAGGTTTCTACAAACAAACATGTCCTCTAGCAGAGCAGATTGTCAAGAACGCCACGTGGAACCACGTCTCCGCCAATCCCAACTTGCCAGCAAAGTTGCTGAGGATGCATTTCCATGACTGTTTTGTAAGGGGATGCGAGGCCTCGGTTTTGTTGAACTCTTCAGCAAATAACACTGCAGAGAGGGATTCGTTCCCAAACTCTTCTTTGGAGGGTTTTGATGTTATTGATGATATAAAAGAACAGTTGGAGAAGGCATGCCCAGGTGTTGTGTCTTGTGCTGATATTCTTGCGTTAGCGACTAGGGATTCTATGTCATTCCAATTCAAGAAATCACTATGGGATGTTCTTACCGGTAGACGAGATGGCACTGTTTCAATAGCAAATGAGGTCTTACGTAACCTTCCAGCTCCTTTCTTCAACTTCACTCAACTCAAACAAAGTTTTGCAAATAGAGGTCTCACTGTGCAAGATCTTGTGGTACTGTCAGTATCGATTCACAGTATGACAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009266 GO:0009269 GO:0009409 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009628 GO:0009636 GO:0009651 GO:0009664 GO:0009987 GO:0010035 GO:0012505 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

200

Amino Acids

21.99

Weight (kDa)

8.13

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	44 - 198	1.4e-52	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016762)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26620
malus_domestica	MD03G1274400.v1.1 MD03G1274500.v1.1
prunus_persica	Prupe.8G251100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0295471
rosa_laevigata	RLG00000011798
rosa_multiflora	Rmu_co8105696.1_g000001 Rmu_ssc0000464.1_g000001
rosa_rugosa	Rorug06G0251200
rosa_samantha	Rh6AG364400 Rh6BG372700 Rh6CG379000 Rh6DG365400
rosa_wichuraiana	Rw6G031820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	445
AciI	CCGC	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	234
AcvI	CACGTG	1 cut(s)	144
AfaI	GTAC	1 cut(s)	570
AflIII	ACRYGT	1 cut(s)	107
AgeI	ACCGGT	1 cut(s)	440
AgsI	TTSAA	4 cut(s)	244, 415, 465, 508
AjiI	CACGTC	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	349
AloI	GAACNNNNNNTCC	2 cut(s)	140, 172
AluBI	AGCT	1 cut(s)	497
AluI	AGCT	1 cut(s)	497
Alw26I	GTCTC	2 cut(s)	160, 551
AoxI	GGCC	1 cut(s)	228
AseI	ATTAAT	1 cut(s)	54
AsiGI	ACCGGT	1 cut(s)	440
Asp700I	GAANNNNTTC	1 cut(s)	92
AxyI	CCTNAGG	1 cut(s)	83
BbrPI	CACGTG	1 cut(s)	144
BbvCI	CCTCAGC	1 cut(s)	188
BccI	CCATC	1 cut(s)	446
BciT130I	CCWGG	1 cut(s)	351
BcoDI	GTCTC	2 cut(s)	160, 551
BfaI	CTAG	3 cut(s)	59, 116, 390
BfmI	CTRYAG	1 cut(s)	264
BglII	AGATCT	1 cut(s)	559
Bme1390I	CCNGG	1 cut(s)	351
BmgBI	CACGTC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	149
BmrFI	CCNGG	1 cut(s)	351
BmsI	GCATC	2 cut(s)	183, 212
Bpu10I	CCTNAGC	1 cut(s)	188
BpuEI	CTTGAG	1 cut(s)	91
Bsa29I	ATCGAT	1 cut(s)	581
BsaAI	YACGTR	2 cut(s)	144, 485
BsaI	GGTCTC	1 cut(s)	551
BsaJI	CCNNGG	2 cut(s)	231, 349
BsaWI	WCCGGW	1 cut(s)	440
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bse118I	RCCGGY	1 cut(s)	440
Bse21I	CCTNAGG	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	351
BseCI	ATCGAT	1 cut(s)	581
BseDI	CCNNGG	2 cut(s)	231, 349
BseGI	GGATG	3 cut(s)	198, 227, 436
BseMII	CTCAG	2 cut(s)	74, 179
BshFI	GGCC	1 cut(s)	230
BshTI	ACCGGT	1 cut(s)	440
BshVI	ATCGAT	1 cut(s)	581
BsiSI	CCGG	1 cut(s)	441
BsmAI	GTCTC	2 cut(s)	160, 551
BsmBI	CGTCTC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	230
Bso31I	GGTCTC	1 cut(s)	551
Bsp143I	GATC	2 cut(s)	24, 559
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	2 cut(s)	75, 180
BspDI	ATCGAT	1 cut(s)	581
BspLI	GGNNCC	1 cut(s)	149
BspMAI	CTGCAG	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	551
BsrFI	RCCGGY	1 cut(s)	440
BssAI	RCCGGY	1 cut(s)	440
BssECI	CCNNGG	2 cut(s)	231, 349
BssMI	GATC	2 cut(s)	24, 559
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	6 cut(s)	209, 333, 460, 553, 573, 590
Bst6I	CTCTTC	2 cut(s)	253, 295
BstBAI	YACGTR	2 cut(s)	144, 485
BstC8I	GCNNGC	2 cut(s)	177, 346
BstDEI	CTNAG	2 cut(s)	83, 188
BstF5I	GGATG	3 cut(s)	198, 227, 436
BstKTI	GATC	2 cut(s)	27, 562
BstMAI	GTCTC	2 cut(s)	160, 551
BstMBI	GATC	2 cut(s)	24, 559
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstNI	CCWGG	1 cut(s)	351
BstNSI	RCATGY	2 cut(s)	111, 348
BstSCI	CCNGG	1 cut(s)	349
BstSFI	CTRYAG	1 cut(s)	264
BstSNI	TACGTA	1 cut(s)	485
BstX2I	RGATCY	1 cut(s)	559
BstYI	RGATCY	1 cut(s)	559
Bsu15I	ATCGAT	1 cut(s)	581
Bsu36I	CCTNAGG	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	230
BsuTUI	ATCGAT	1 cut(s)	581
BtrI	CACGTC	1 cut(s)	154
BtsCI	GGATG	3 cut(s)	198, 227, 436
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	3 cut(s)	261, 456, 549
Cac8I	GCNNGC	2 cut(s)	177, 346
Cfr10I	RCCGGY	1 cut(s)	440
ClaI	ATCGAT	1 cut(s)	581
Csp6I	GTAC	1 cut(s)	569
CspAI	ACCGGT	1 cut(s)	440
CviAII	CATG	4 cut(s)	108, 203, 345, 600
CviJI	RGCY	3 cut(s)	81, 230, 497
CviKI_1	RGCY	3 cut(s)	81, 230, 497
CviQI	GTAC	1 cut(s)	569
DdeI	CTNAG	2 cut(s)	83, 188
DpnI	GATC	2 cut(s)	26, 561
DpnII	GATC	2 cut(s)	24, 559
Eam1104I	CTCTTC	2 cut(s)	253, 295
EarI	CTCTTC	2 cut(s)	253, 295
EciI	GGCGGA	1 cut(s)	148
Eco105I	TACGTA	1 cut(s)	485
Eco147I	AGGCCT	1 cut(s)	230
Eco31I	GGTCTC	1 cut(s)	551
Eco57I	CTGAAG	1 cut(s)	234
Eco72I	CACGTG	1 cut(s)	144
Eco81I	CCTNAGG	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	349
EcoT22I	ATGCAT	1 cut(s)	198
Esp3I	CGTCTC	1 cut(s)	160
FaeI	CATG	4 cut(s)	111, 206, 348, 603
FaiI	YATR	9 cut(s)	41, 109, 204, 323, 346, 401, 427, 593, 601
FatI	CATG	4 cut(s)	107, 202, 344, 599
FblI	GTMKAC	1 cut(s)	445
FokI	GGATG	3 cut(s)	205, 234, 443
FspBI	CTAG	3 cut(s)	59, 116, 390
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	1 cut(s)	441
Hin1II	CATG	4 cut(s)	111, 206, 348, 603
HinfI	GANTC	3 cut(s)	275, 395, 583
HpaII	CCGG	1 cut(s)	441
Hpy166II	GTNNAC	1 cut(s)	446
Hpy188III	TCNNGA	2 cut(s)	133, 415
Hpy8I	GTNNAC	1 cut(s)	446
HpyAV	CCTTC	2 cut(s)	334, 500
HpyCH4III	ACNGT	6 cut(s)	209, 333, 460, 553, 573, 590
HpyCH4IV	ACGT	3 cut(s)	143, 153, 484
HpyCH4V	TGCA	5 cut(s)	51, 196, 266, 536, 556
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpyF3I	CTNAG	2 cut(s)	83, 188
HpySE526I	ACGT	3 cut(s)	143, 153, 484
Hsp92II	CATG	4 cut(s)	111, 206, 348, 603
Kzo9I	GATC	2 cut(s)	24, 559
LmnI	GCTCC	1 cut(s)	502
LpnPI	CCDG	6 cut(s)	95, 189, 336, 363, 454, 507
LweI	GCATC	2 cut(s)	183, 212
MaeI	CTAG	3 cut(s)	59, 116, 390
MaeII	ACGT	3 cut(s)	143, 153, 484
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	2 cut(s)	26, 561
MboI	GATC	2 cut(s)	24, 559
MboII	GAAGA	3 cut(s)	240, 282, 496
MflI	RGATCY	1 cut(s)	559
MluCI	AATT	2 cut(s)	19, 410
MmeI	TCCRAC	1 cut(s)	315
Mph1103I	ATGCAT	1 cut(s)	198
MroXI	GAANNNNTTC	1 cut(s)	92
MseI	TTAA	1 cut(s)	54
MslI	CAYNNNNRTG	1 cut(s)	201
MspI	CCGG	1 cut(s)	441
MspR9I	CCNGG	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	1 cut(s)	193
NdeII	GATC	2 cut(s)	24, 559
NlaIII	CATG	4 cut(s)	111, 206, 348, 603
NlaIV	GGNNCC	1 cut(s)	149
NsiI	ATGCAT	1 cut(s)	198
NspI	RCATGY	2 cut(s)	111, 348
PaeI	GCATGC	1 cut(s)	348
PceI	AGGCCT	1 cut(s)	230
PciI	ACATGT	1 cut(s)	107
PdmI	GAANNNNTTC	1 cut(s)	92
PfeI	GAWTC	3 cut(s)	275, 395, 583
PinAI	ACCGGT	1 cut(s)	440
PmaCI	CACGTG	1 cut(s)	144
PmlI	CACGTG	1 cut(s)	144
Ppu21I	YACGTR	2 cut(s)	144, 485
PscI	ACATGT	1 cut(s)	107
PshBI	ATTAAT	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	349
PspCI	CACGTG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	149
PstI	CTGCAG	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	559
RsaI	GTAC	1 cut(s)	570
RsaNI	GTAC	1 cut(s)	569
RseI	CAYNNNNRTG	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	54
Sau3AI	GATC	2 cut(s)	24, 559
ScrFI	CCNGG	1 cut(s)	351
SfaNI	GCATC	2 cut(s)	183, 212
SfcI	CTRYAG	1 cut(s)	264
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
SnaBI	TACGTA	1 cut(s)	485
SphI	GCATGC	1 cut(s)	348
Sse9I	AATT	2 cut(s)	19, 410
SseBI	AGGCCT	1 cut(s)	230
SsiI	CCGC	1 cut(s)	159
SspMI	CTAG	3 cut(s)	59, 116, 390
StuI	AGGCCT	1 cut(s)	230
StyD4I	CCNGG	1 cut(s)	349
TaaI	ACNGT	6 cut(s)	209, 333, 460, 553, 573, 590
TaiI	ACGT	3 cut(s)	146, 156, 487
TaqI	TCGA	1 cut(s)	581
TasI	AATT	2 cut(s)	19, 410
TfiI	GAWTC	3 cut(s)	275, 395, 583
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	3 cut(s)	268, 463, 556
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	268, 463, 556
VspI	ATTAAT	1 cut(s)	54
XceI	RCATGY	2 cut(s)	111, 348
XmiI	GTMKAC	1 cut(s)	445
XmnI	GAANNNNTTC	1 cut(s)	92
XspI	CTAG	3 cut(s)	59, 116, 390
Zsp2I	ATGCAT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.