MD03G1282600.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0015846
Physical Location & Seq
Forward (+)
36304671 .. 36305051
381 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1282600.v1.1.491

Sequence Viewer

Length: 381 bp
ATGGAACAAGAAGGTATCAGAATAGACGAAGTGACTTTGGTTGCAGTTCTAAGTGCTTGCAGTCACACGGGGTTGGCAGACATCGGTAGGCAGATTTTTCGTTCCTTGAGTGATGGAAAGTATGGATTGTTTCCCGGGGTCAAGCACTATACTTGTATGATTGACCTCTTAGCACGTTCGGGGTGTCTTGAAGATGCTTTGAAATGCTTGAAAGAAATGCCTTTTGTTGAGCCAACTATAACTATTTGGGGGTCGTTGTTGGGCGGTGCTAAAAGTCAAGGGAATTTGGAATTGAGCGAGTTTGCAGCTTGGAAGCTTGTTGAACTGGATCCAGGGAATAGTGGTTACTATGTTTTGCTGTCGAGAAAGTGCGGGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00630 ko00910 ko01200 map00460 map00630 map00910 map01200
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

127

Amino Acids

13.67

Weight (kDa)

5.32

Isoelectric Point (pI)

40.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 49 - 73 7.2e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015846)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43790
fragaria_vesca FvH4_2g25230
malus_domestica MD03G1282600.v1.1 MD11G1303700.v1.1
prunus_persica Prupe.8G257000_v2.0.a1
pyrus_communis pycom11g26530
rosa_chinensis RchiOBHm_Chr6g0293351
rosa_laevigata RLG00000011953
rosa_multiflora Rmu_sc0006269.1_g000030
rosa_roxburghii Rroxscaffold_7G00174230
rosa_rugosa Rorug06G0234800
rosa_samantha Rh6AG347700 Rh6BG355300 Rh6DG348500
rosa_wichuraiana Rw6G030250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 264, 372
AclWI GGATC 2 cut(s) 323, 336
AcsI RAATTY 1 cut(s) 283
AgsI TTSAA 4 cut(s) 191, 202, 211, 323
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 2 cut(s) 308, 316
AluI AGCT 2 cut(s) 308, 316
AlwI GGATC 2 cut(s) 323, 336
Ama87I CYCGRG 1 cut(s) 134
ApeKI GCWGC 1 cut(s) 305
ApoI RAATTY 1 cut(s) 283
AsuC2I CCSGG 2 cut(s) 135, 136
AvaI CYCGRG 1 cut(s) 134
BamHI GGATCC 1 cut(s) 328
BbvI GCAGC 1 cut(s) 317
BccI CCATC 1 cut(s) 107
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciT130I CCWGG 1 cut(s) 333
BcnI CCSGG 2 cut(s) 135, 136
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
Bme1390I CCNGG 3 cut(s) 135, 136, 333
BmeT110I CYCGRG 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 330
BmrFI CCNGG 3 cut(s) 135, 136, 333
BmsI GCATC 1 cut(s) 184
BpuEI CTTGAG 1 cut(s) 127
BpuMI CCSGG 2 cut(s) 135, 136
BsaJI CCNNGG 3 cut(s) 134, 135, 332
Bse1I ACTGG 1 cut(s) 330
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 3 cut(s) 134, 135, 332
BseNI ACTGG 1 cut(s) 330
BseXI GCAGC 1 cut(s) 317
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 1 cut(s) 135
BsoBI CYCGRG 1 cut(s) 134
Bsp143I GATC 1 cut(s) 328
BspACI CCGC 2 cut(s) 264, 372
BspLI GGNNCC 1 cut(s) 330
BspPI GGATC 2 cut(s) 323, 336
BsrI ACTGG 1 cut(s) 330
BssECI CCNNGG 3 cut(s) 134, 135, 332
BssMI GATC 1 cut(s) 328
Bst2UI CCWGG 1 cut(s) 333
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 2 cut(s) 50, 169
BstKTI GATC 1 cut(s) 331
BstMBI GATC 1 cut(s) 328
BstNI CCWGG 1 cut(s) 333
BstSCI CCNGG 3 cut(s) 133, 134, 331
BstV1I GCAGC 1 cut(s) 317
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
Cac8I GCNNGC 1 cut(s) 58
Cfr9I CCCGGG 1 cut(s) 134
CviJI RGCY 3 cut(s) 232, 308, 316
CviKI_1 RGCY 3 cut(s) 232, 308, 316
DdeI CTNAG 2 cut(s) 50, 169
DpnI GATC 1 cut(s) 330
DpnII GATC 1 cut(s) 328
Eco88I CYCGRG 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 331
FaiI YATR 5 cut(s) 123, 150, 158, 239, 351
FauI CCCGC 1 cut(s) 365
Fnu4HI GCNGC 1 cut(s) 306
Fsp4HI GCNGC 1 cut(s) 306
GluI GCNGC 1 cut(s) 306
HapII CCGG 1 cut(s) 135
HindIII AAGCTT 1 cut(s) 314
HpaII CCGG 1 cut(s) 135
Hpy188I TCNGA 1 cut(s) 20
Hpy188III TCNNGA 2 cut(s) 188, 363
HpyAV CCTTC 1 cut(s) 5
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 3 cut(s) 44, 60, 305
HpyF3I CTNAG 2 cut(s) 50, 169
HpySE526I ACGT 1 cut(s) 175
Kzo9I GATC 1 cut(s) 328
LpnPI CCDG 4 cut(s) 148, 311, 318, 345
Lsp1109I GCAGC 1 cut(s) 317
LweI GCATC 1 cut(s) 184
MaeII ACGT 1 cut(s) 175
MaeIII GTNAC 3 cut(s) 31, 62, 344
MalI GATC 1 cut(s) 330
MboI GATC 1 cut(s) 328
MboII GAAGA 1 cut(s) 203
MflI RGATCY 1 cut(s) 328
MluCI AATT 2 cut(s) 283, 290
MnlI CCTC 1 cut(s) 176
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 3 cut(s) 135, 136, 333
MvaI CCWGG 1 cut(s) 333
NciI CCSGG 2 cut(s) 135, 136
NdeII GATC 1 cut(s) 328
NlaIV GGNNCC 1 cut(s) 330
NmuCI GTSAC 2 cut(s) 31, 62
PkrI GCNGC 1 cut(s) 307
Psp6I CCWGG 1 cut(s) 331
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 330
PsuI RGATCY 1 cut(s) 328
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 1 cut(s) 328
ScrFI CCNGG 3 cut(s) 135, 136, 333
SetI ASST 5 cut(s) 16, 168, 178, 310, 318
SfaNI GCATC 1 cut(s) 184
SmaI CCCGGG 1 cut(s) 136
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
Sse9I AATT 2 cut(s) 283, 290
SsiI CCGC 2 cut(s) 264, 372
StyD4I CCNGG 3 cut(s) 133, 134, 331
TaiI ACGT 1 cut(s) 178
TaqI TCGA 1 cut(s) 362
TasI AATT 2 cut(s) 283, 290
TseFI GTSAC 2 cut(s) 31, 62
TseI GCWGC 1 cut(s) 305
Tsp45I GTSAC 2 cut(s) 31, 62
TspMI CCCGGG 1 cut(s) 134
XapI RAATTY 1 cut(s) 283
XmaI CCCGGG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.