Prupe.8G257000_v2.0.a1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0015846
Physical Location & Seq
Reverse (-)
21902415 .. 21903838
1424 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G257000.1

Sequence Viewer

Length: 1236 bp
ATGAGACCACTTCCGCCGCTCAGCTCAGCAACAAGTCGAGTTCTCTCTCTCCTCAGCAACTGCTCCTCTGCTACTCACATCAACCAAATCCAAACCCAACTCATCCTCCTAAACCTCCACTCAAACACCACCATTGCCTCCCACTTCATCTCTGCCTGTCAATCTCTTGGCCTCTTGGATTTAGCCCACCTACACTTCCTAACTCAGCTTCCCAAACCCCATGTTTTCATTTGCAATTCTCTCATTAGAGCATTCTCTCACTCCCACACTCCTCATAATCAGATTCATAATCATATCCCTCTCTCTATCTACGTCCACATGCATAAAAGCTCTATTCTTCCCAATAACTTCACCTTCCCTTTCCTTCTAAAGTCCCTAGCTGATTCCCACGACTTCAAACAAGGGCAATGCTTGCATACCCATGTCTTAAAATTGGGTCATCTCTATGATATTTACGTGCATAACTCGTTATTGAATGTCTATGCATCGTGTGGCCGTATGGAGTTTTGTCGACAGGTGTTTGATGAAATGCCCCAGAGAGATGTTGTGTCGTGGACGGTTTTAATAATGGGGTACCGGAACTCCGAGAATTATGATGATGCCTTGATTTCTTTTGAACAGATGCAATATGCTGGTGTGGTCCCCAATCATGTGACAATGGTGAATGCTTTAGCTGCTTGTGCAAATTTTGGGGCCCTTGAGATGGGTATTTGGATACATGACTTTATAAGGAGGAGTGGCTGGGAATTGGATGTTATCTTGGGAACTTCTTTGATTGATATGTATGGAAAATGTGGTAGGATTGAAGAAGATATCGGCAGGCAGATTTTTCGTTCCTTGAGCGATGGGAAGTATGGATTTTTGCCTGGGGTGAAACATTATGCTTGTATGATTGACCTGTTAGCACGTTCTGGGTATCTTGAAGATGCTTTGAATTGCTTAAGAGAAATGCCTTATGAGCCTACTAAAGCTATTTGGGGTTCATTGCTGGCTGGTGGTAAAACTCATGGGAACTTGGAATTGAGCGAGTTTGCAGCTCGGAAGCTTGTTGAACTAGAGCCAGGGAGTAGTGCTTACTATGTTCTGCTGTCTAATATTTATGCAGAGATGGGAAGATGGAATGATGTTGAGAAAGTCAGGGGGATGATGAAACAGAGAGACCTTAAGAAAGACTCGGGCTGTAGTTCTGTGGAATTTGAACCCTCTGACCAAGTTACTCAACTGTTAGCACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00630 ko00910 ko01200 map00460 map00630 map00910 map01200
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

412

Amino Acids

46.31

Weight (kDa)

6.51

Isoelectric Point (pI)

46.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015846)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43790
fragaria_vesca FvH4_2g25230
malus_domestica MD03G1282600.v1.1 MD11G1303700.v1.1
prunus_persica Prupe.8G257000_v2.0.a1
pyrus_communis pycom11g26530
rosa_chinensis RchiOBHm_Chr6g0293351
rosa_laevigata RLG00000011953
rosa_multiflora Rmu_sc0006269.1_g000030
rosa_roxburghii Rroxscaffold_7G00174230
rosa_rugosa Rorug06G0234800
rosa_samantha Rh6AG347700 Rh6BG355300 Rh6DG348500
rosa_wichuraiana Rw6G030250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 728
Acc65I GGTACC 1 cut(s) 573
AccB1I GGYRCC 1 cut(s) 573
AccBSI CCGCTC 1 cut(s) 19
AccI GTMKAC 1 cut(s) 511
AciI CCGC 2 cut(s) 14, 17
AcoI YGGCCR 1 cut(s) 493
AcsI RAATTY 2 cut(s) 685, 1193
AfaI GTAC 1 cut(s) 575
AfiI CCNNNNNNNGG 1 cut(s) 703
AflII CTTAAG 2 cut(s) 940, 1163
AgsI TTSAA 8 cut(s) 397, 475, 617, 806, 923, 934, 1052, 1199
AjnI CCWGG 2 cut(s) 865, 1060
AluBI AGCT 8 cut(s) 24, 208, 330, 380, 674, 971, 1037, 1045
AluI AGCT 8 cut(s) 24, 208, 330, 380, 674, 971, 1037, 1045
Alw26I GTCTC 1 cut(s) 1152
AlwNI CAGNNNCTG 1 cut(s) 60
Ama87I CYCGRG 1 cut(s) 1174
AoxI GGCC 3 cut(s) 169, 493, 693
ApaI GGGCCC 1 cut(s) 697
ApeKI GCWGC 2 cut(s) 674, 1034
ApoI RAATTY 2 cut(s) 685, 1193
Asp718I GGTACC 1 cut(s) 573
AspS9I GGNCC 3 cut(s) 640, 693, 694
AsuHPI GGTGA 3 cut(s) 343, 673, 883
AvaI CYCGRG 1 cut(s) 1174
AvaII GGWCC 1 cut(s) 640
BaeGI GKGCMC 1 cut(s) 697
BanI GGYRCC 1 cut(s) 573
BanII GRGCYC 1 cut(s) 697
BbvCI CCTCAGC 1 cut(s) 53
BbvI GCAGC 2 cut(s) 661, 1046
BccI CCATC 4 cut(s) 697, 839, 1102, 1110
BceAI ACGGC 1 cut(s) 480
BcgI CGANNNNNNTGC 2 cut(s) 812, 846
BciT130I CCWGG 2 cut(s) 867, 1062
BciVI GTATCC 1 cut(s) 708
BcoDI GTCTC 1 cut(s) 1152
BfaI CTAG 2 cut(s) 377, 1055
BfmI CTRYAG 1 cut(s) 1180
BfrI CTTAAG 2 cut(s) 940, 1163
BfuI GTATCC 1 cut(s) 708
BisI GCNGC 3 cut(s) 17, 675, 1035
BlpI GCTNAGC 2 cut(s) 20, 25
BlsI GCNGC 3 cut(s) 18, 676, 1036
Bme1390I CCNGG 2 cut(s) 867, 1062
Bme18I GGWCC 1 cut(s) 640
BmeT110I CYCGRG 1 cut(s) 1174
BmgT120I GGNCC 3 cut(s) 640, 693, 694
BmiI GGNNCC 4 cut(s) 575, 642, 694, 695
BmrFI CCNGG 2 cut(s) 867, 1062
BmsI GCATC 4 cut(s) 494, 589, 612, 916
Bpu10I CCTNAGC 1 cut(s) 53
Bpu1102I GCTNAGC 2 cut(s) 20, 25
BpuEI CTTGAG 2 cut(s) 719, 859
BsaAI YACGTR 1 cut(s) 457
BsaI GGTCTC 1 cut(s) 1152
BsaJI CCNNGG 2 cut(s) 866, 1061
BsaWI WCCGGW 1 cut(s) 576
BsaXI ACNNNNNCTCC 4 cut(s) 90, 120, 566, 596
Bsc4I CCNNNNNNNGG 1 cut(s) 703
Bse3DI GCAATG 3 cut(s) 132, 413, 983
BseBI CCWGG 2 cut(s) 867, 1062
BseDI CCNNGG 2 cut(s) 866, 1061
BseGI GGATG 3 cut(s) 102, 757, 1149
BseLI CCNNNNNNNGG 1 cut(s) 703
BseMI GCAATG 3 cut(s) 132, 413, 983
BseMII CTCAG 4 cut(s) 34, 39, 67, 218
BseRI GAGGAG 4 cut(s) 41, 55, 261, 748
BseSI GKGCMC 1 cut(s) 697
BseXI GCAGC 2 cut(s) 661, 1046
BseYI CCCAGC 1 cut(s) 741
BshFI GGCC 3 cut(s) 171, 495, 695
BshNI GGYRCC 1 cut(s) 573
BsiHKCI CYCGRG 1 cut(s) 1174
BsiSI CCGG 1 cut(s) 577
BslFI GGGAC 2 cut(s) 358, 626
BslI CCNNNNNNNGG 1 cut(s) 703
BsmAI GTCTC 1 cut(s) 1152
BsmFI GGGAC 2 cut(s) 358, 626
BsmI GAATGC 2 cut(s) 251, 670
BsnI GGCC 3 cut(s) 171, 495, 695
Bso31I GGTCTC 1 cut(s) 1152
BsoBI CYCGRG 1 cut(s) 1174
Bsp120I GGGCCC 1 cut(s) 693
Bsp1286I GDGCHC 1 cut(s) 697
Bsp1720I GCTNAGC 2 cut(s) 20, 25
BspACI CCGC 2 cut(s) 14, 17
BspANI GGCC 3 cut(s) 171, 495, 695
BspCNI CTCAG 4 cut(s) 33, 38, 66, 217
BspLI GGNNCC 4 cut(s) 575, 642, 694, 695
BspT107I GGYRCC 1 cut(s) 573
BspTI CTTAAG 2 cut(s) 940, 1163
BspTNI GGTCTC 1 cut(s) 1152
BsrBI CCGCTC 1 cut(s) 19
BsrDI GCAATG 3 cut(s) 132, 413, 983
BssECI CCNNGG 2 cut(s) 866, 1061
Bst2UI CCWGG 2 cut(s) 867, 1062
Bst4CI ACNGT 2 cut(s) 559, 1224
BstAFI CTTAAG 2 cut(s) 940, 1163
BstAPI GCANNNNNTGC 1 cut(s) 412
BstBAI YACGTR 1 cut(s) 457
BstC8I GCNNGC 3 cut(s) 413, 821, 990
BstDEI CTNAG 4 cut(s) 20, 25, 53, 204
BstF5I GGATG 3 cut(s) 102, 757, 1149
BstMAI GTCTC 1 cut(s) 1152
BstMWI GCNNNNNNNGC 4 cut(s) 412, 674, 680, 958
BstNI CCWGG 2 cut(s) 867, 1062
BstNSI RCATGY 1 cut(s) 322
BstSCI CCNGG 2 cut(s) 865, 1060
BstSFI CTRYAG 1 cut(s) 1180
BstSLI GKGCMC 1 cut(s) 697
BstV1I GCAGC 2 cut(s) 661, 1046
BsuI GTATCC 1 cut(s) 708
BsuRI GGCC 3 cut(s) 171, 495, 695
BtgZI GCGATG 1 cut(s) 858
BtsCI GGATG 3 cut(s) 102, 757, 1149
Cac8I GCNNGC 3 cut(s) 413, 821, 990
CaiI CAGNNNCTG 1 cut(s) 60
Cfr13I GGNCC 3 cut(s) 640, 693, 694
Csp6I GTAC 1 cut(s) 574
CviAII CATG 6 cut(s) 221, 319, 422, 650, 719, 1007
CviQI GTAC 1 cut(s) 574
DdeI CTNAG 4 cut(s) 20, 25, 53, 204
EaeI YGGCCR 1 cut(s) 493
Eco24I GRGCYC 1 cut(s) 697
Eco31I GGTCTC 1 cut(s) 1152
Eco32I GATATC 1 cut(s) 814
Eco47I GGWCC 1 cut(s) 640
Eco88I CYCGRG 1 cut(s) 1174
EcoO109I RGGNCCY 2 cut(s) 693, 694
EcoRII CCWGG 2 cut(s) 865, 1060
EcoRV GATATC 1 cut(s) 814
EcoT22I ATGCAT 2 cut(s) 324, 487
EcoT38I GRGCYC 1 cut(s) 697
FaeI CATG 6 cut(s) 224, 322, 425, 653, 722, 1010
FaqI GGGAC 2 cut(s) 358, 626
FatI CATG 6 cut(s) 220, 318, 421, 649, 718, 1006
FblI GTMKAC 1 cut(s) 511
Fnu4HI GCNGC 3 cut(s) 17, 675, 1035
FokI GGATG 3 cut(s) 89, 764, 1156
FriOI GRGCYC 1 cut(s) 697
Fsp4HI GCNGC 3 cut(s) 17, 675, 1035
FspBI CTAG 2 cut(s) 377, 1055
GluI GCNGC 3 cut(s) 17, 675, 1035
GsaI CCCAGC 1 cut(s) 745
HaeIII GGCC 3 cut(s) 171, 495, 695
HapII CCGG 1 cut(s) 577
Hin1II CATG 6 cut(s) 224, 322, 425, 653, 722, 1010
HincII GTYRAC 1 cut(s) 512
HindII GTYRAC 1 cut(s) 512
HindIII AAGCTT 1 cut(s) 1043
HinfI GANTC 3 cut(s) 283, 383, 1172
HpaII CCGG 1 cut(s) 577
HphI GGTGA 3 cut(s) 343, 673, 883
Hpy166II GTNNAC 3 cut(s) 316, 512, 555
Hpy188I TCNGA 4 cut(s) 282, 586, 1041, 1207
Hpy188III TCNNGA 1 cut(s) 920
Hpy8I GTNNAC 3 cut(s) 316, 512, 555
HpyAV CCTTC 2 cut(s) 364, 374
HpyCH4III ACNGT 2 cut(s) 559, 1224
HpyCH4IV ACGT 3 cut(s) 312, 456, 907
HpyCH4V TGCA 9 cut(s) 234, 322, 415, 460, 485, 625, 683, 1034, 1103
HpyF10VI GCNNNNNNNGC 4 cut(s) 412, 674, 680, 958
HpyF3I CTNAG 4 cut(s) 20, 25, 53, 204
HpySE526I ACGT 3 cut(s) 312, 456, 907
Hsp92II CATG 6 cut(s) 224, 322, 425, 653, 722, 1010
KpnI GGTACC 1 cut(s) 577
LmnI GCTCC 1 cut(s) 68
Lsp1109I GCAGC 2 cut(s) 661, 1046
LweI GCATC 4 cut(s) 494, 589, 612, 916
MaeI CTAG 2 cut(s) 377, 1055
MaeII ACGT 3 cut(s) 312, 456, 907
MaeIII GTNAC 2 cut(s) 652, 1213
MbiI CCGCTC 1 cut(s) 19
MboII GAAGA 5 cut(s) 329, 818, 821, 935, 1125
MhlI GDGCHC 1 cut(s) 697
MluCI AATT 8 cut(s) 235, 431, 589, 685, 746, 934, 1019, 1193
MlyI GAGTC 1 cut(s) 1166
Mph1103I ATGCAT 2 cut(s) 324, 487
MseI TTAA 4 cut(s) 428, 563, 941, 1164
MslI CAYNNNNRTG 2 cut(s) 420, 444
MspCI CTTAAG 2 cut(s) 940, 1163
MspI CCGG 1 cut(s) 577
MspR9I CCNGG 2 cut(s) 867, 1062
Mva1269I GAATGC 2 cut(s) 251, 670
MvaI CCWGG 2 cut(s) 867, 1062
MwoI GCNNNNNNNGC 4 cut(s) 412, 674, 680, 958
NlaIII CATG 6 cut(s) 224, 322, 425, 653, 722, 1010
NlaIV GGNNCC 4 cut(s) 575, 642, 694, 695
NmuCI GTSAC 1 cut(s) 652
NsiI ATGCAT 2 cut(s) 324, 487
NspI RCATGY 1 cut(s) 322
PctI GAATGC 2 cut(s) 251, 670
PfeI GAWTC 2 cut(s) 283, 383
PkrI GCNGC 3 cut(s) 18, 676, 1036
PleI GAGTC 1 cut(s) 1166
PpsI GAGTC 1 cut(s) 1166
Ppu21I YACGTR 1 cut(s) 457
PsiI TTATAA 1 cut(s) 728
Psp6I CCWGG 2 cut(s) 865, 1060
PspFI CCCAGC 1 cut(s) 741
PspGI CCWGG 2 cut(s) 865, 1060
PspN4I GGNNCC 4 cut(s) 575, 642, 694, 695
PspOMI GGGCCC 1 cut(s) 693
PspPI GGNCC 3 cut(s) 640, 693, 694
PstNI CAGNNNCTG 1 cut(s) 60
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
RseI CAYNNNNRTG 2 cut(s) 420, 444
SalI GTCGAC 1 cut(s) 510
SaqAI TTAA 4 cut(s) 428, 563, 941, 1164
SatI GCNGC 3 cut(s) 17, 675, 1035
Sau96I GGNCC 3 cut(s) 640, 693, 694
SchI GAGTC 1 cut(s) 1166
ScrFI CCNGG 2 cut(s) 867, 1062
SduI GDGCHC 1 cut(s) 697
SfaNI GCATC 4 cut(s) 494, 589, 612, 916
SfcI CTRYAG 1 cut(s) 1180
SinI GGWCC 1 cut(s) 640
SmiMI CAYNNNNRTG 2 cut(s) 420, 444
SmlI CTYRAG 4 cut(s) 698, 838, 940, 1163
SmoI CTYRAG 4 cut(s) 698, 838, 940, 1163
Sse9I AATT 8 cut(s) 235, 431, 589, 685, 746, 934, 1019, 1193
SsiI CCGC 2 cut(s) 14, 17
SspI AATATT 1 cut(s) 1096
SspMI CTAG 2 cut(s) 377, 1055
StyD4I CCNGG 2 cut(s) 865, 1060
TaaI ACNGT 2 cut(s) 559, 1224
TaiI ACGT 3 cut(s) 315, 459, 910
TaqI TCGA 2 cut(s) 37, 511
TasI AATT 8 cut(s) 235, 431, 589, 685, 746, 934, 1019, 1193
TauI GCSGC 1 cut(s) 19
TfiI GAWTC 2 cut(s) 283, 383
Tru1I TTAA 4 cut(s) 428, 563, 941, 1164
Tru9I TTAA 4 cut(s) 428, 563, 941, 1164
TseFI GTSAC 1 cut(s) 652
TseI GCWGC 2 cut(s) 674, 1034
Tsp45I GTSAC 1 cut(s) 652
TspDTI ATGAA 6 cut(s) 136, 217, 275, 540, 972, 1163
Vha464I CTTAAG 2 cut(s) 940, 1163
VpaK11BI GGWCC 1 cut(s) 640
XapI RAATTY 2 cut(s) 685, 1193
XceI RCATGY 1 cut(s) 322
XmiI GTMKAC 1 cut(s) 511
XspI CTAG 2 cut(s) 377, 1055
Zsp2I ATGCAT 2 cut(s) 324, 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.