RLG00000011953

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015846
Physical Location & Seq
Forward (+)
14017794 .. 14019608
1815 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011953

Sequence Viewer

Length: 1356 bp
ATGTCGCAGTTGAACGTCACAACCACCAGACTCCTCTCACTCCTACCCAACTGCTCCTCCATCACTCACATCCATCAAATCCAAGCCCAGCTCATCACCCAAAACCTCCACTCAATCACCACCGTCGCCTCCACCTTCATCACCACCTGTAAAACCCTGGGCCTCCTCCACTTGGCCCACCTTCACTTACTCACCCAGCTCCCAAACCCCCATGTCTTCACCTGCAACTCCCTCATCAGAGCCTTCTCTCATTCCCACATCCCTCACGTCCCTCTCTCTATATACACCCACATGTGCAAAACCTCCATTCCTCCCAATCACTACACATTTCCTATTCTTTTCAAGTCCTTGGCCCACGGCCGGGACCTCAGACAAGGCCGATGCTTGCATACCCATGTCGTCAAATTGGGTCACTGGTGTGATATCTACGTCCAGAACTCGGCTTTGGATTTGTATGCTTCGTGTGGCCGGATGGACCTATGTCGAAAGGTGTTTGATGAAATGCCTCAGAGAGATGTTGTGTCGTGGACCGGTTTGATTAAGGGGTACCGGAACTTGGGGAAGTATGACGATGCGTTGATTGCTTTCGAGCAGATGCAGCATGCGGGTGTGGTGCCGAATGCTGTGACGATGGTGAATGCTTTGGCTGCGTGTGCGAGTTTCGGGGCGCTTGAGATGGGGGTGTGGATTCATGAATGCATAAGGAGGGAGGGATGGGAGTTGGATGTGAAATTGGGAACAGCGTTGATTGATTTGTATGGAACATGTGGGAAAACTGAGGAGGCTTTGGCTGTTTTCGATACGATGGAAGAGAAGAACACATTTACTTGGAATGCACTGATCAAGGGGTTTGCTCTTGCCAAGAGCGGCGAGGAGGCAGTTTGGTGGTTTGGGAGGATGGAACAAGAAGGGTTCGGTGCAGACGAAGTGACTTTGGTGGAACTGCTTTCTGCTTGTAGTCACTCGGGGTTGGTAGATATTGGTAGACAAATTTTTAGTTCCTTGAGCAATGGGAAGTATGGATTTTTGCCGAGCGTCAAGCATTATGCTTGTATGATTGACCTCTTGGCTCGTGCCGGGTGTCTTGAAGATGCTTTCAAATGTTTAAGAGAGATGCCTTATGAGCCTAGTCAAGCTATGTTGGGTTCATTGCTGGCTGCTGCTCGGCGGAACACAAACCCTTTGACCAAGTCGATCAACTGGTTGCGCAATAAGTCGGATTGCATTTACAAGCAAACTTGTAGCATGGGTAAATGGCAAACACAAACTTCAAACACCCAAAACAAATTGTCAAAGCAAATGCAGAAGGCATCAAATTTCGCATTGAAGACAAGAGACAAAAGGTCAGAGGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00630 ko00910 ko01200 map00460 map00630 map00910 map01200
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

452

Amino Acids

50.47

Weight (kDa)

8.59

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 70 - 119 3.4e-07 PPR repeat family
PPR_2 PF13041 171 - 217 3.2e-08 PPR repeat family
PPR PF01535 275 - 305 4.6e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015846)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43790
fragaria_vesca FvH4_2g25230
malus_domestica MD03G1282600.v1.1 MD11G1303700.v1.1
prunus_persica Prupe.8G257000_v2.0.a1
pyrus_communis pycom11g26530
rosa_chinensis RchiOBHm_Chr6g0293351
rosa_laevigata RLG00000011953
rosa_multiflora Rmu_sc0006269.1_g000030
rosa_roxburghii Rroxscaffold_7G00174230
rosa_rugosa Rorug06G0234800
rosa_samantha Rh6AG347700 Rh6BG355300 Rh6DG348500
rosa_wichuraiana Rw6G030250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 230
Acc16I TGCGCA 1 cut(s) 1208
Acc36I ACCTGC 1 cut(s) 230
Acc65I GGTACC 1 cut(s) 546
AccB1I GGYRCC 2 cut(s) 546, 613
AccBSI CCGCTC 1 cut(s) 867
AccI GTMKAC 1 cut(s) 985
AciI CCGC 3 cut(s) 605, 867, 1168
AcoI YGGCCR 2 cut(s) 358, 466
AcsI RAATTY 2 cut(s) 990, 1315
AfaI GTAC 1 cut(s) 548
AfiI CCNNNNNNNGG 5 cut(s) 172, 360, 361, 439, 556
AflIII ACRYGT 2 cut(s) 291, 764
AgeI ACCGGT 1 cut(s) 530
AgsI TTSAA 6 cut(s) 13, 343, 1088, 1099, 1272, 1327
AhdI GACNNNNNGTC 1 cut(s) 1342
AjiI CACGTC 1 cut(s) 268
AjnI CCWGG 1 cut(s) 156
AjuI GAANNNNNNNTTGG 2 cut(s) 428, 460
AleI CACNNNNGTG 1 cut(s) 417
AluBI AGCT 3 cut(s) 91, 199, 1136
AluI AGCT 3 cut(s) 91, 199, 1136
Alw26I GTCTC 1 cut(s) 1329
Ama87I CYCGRG 1 cut(s) 964
AoxI GGCC 6 cut(s) 160, 174, 351, 358, 376, 466
ApeKI GCWGC 4 cut(s) 598, 647, 1157, 1160
ApoI RAATTY 2 cut(s) 990, 1315
AsiGI ACCGGT 1 cut(s) 530
Asp718I GGTACC 1 cut(s) 546
AspLEI GCGC 2 cut(s) 670, 1209
AspS9I GGNCC 6 cut(s) 160, 175, 352, 364, 475, 528
AsuC2I CCSGG 2 cut(s) 362, 1078
AsuHPI GGTGA 6 cut(s) 88, 109, 133, 184, 211, 646
AvaI CYCGRG 1 cut(s) 964
AvaII GGWCC 3 cut(s) 364, 475, 528
BanI GGYRCC 2 cut(s) 546, 613
BauI CACGAG 1 cut(s) 1071
BbsI GAAGAC 2 cut(s) 208, 1334
BbvI GCAGC 4 cut(s) 610, 634, 1144, 1147
BccI CCATC 8 cut(s) 68, 81, 466, 625, 670, 708, 799, 892
BceAI ACGGC 1 cut(s) 373
BciT130I CCWGG 1 cut(s) 158
BclI TGATCA 1 cut(s) 840
BcnI CCSGG 2 cut(s) 362, 1078
BcoDI GTCTC 1 cut(s) 1329
BfaI CTAG 1 cut(s) 1128
BfoI RGCGCY 1 cut(s) 671
BfuAI ACCTGC 1 cut(s) 230
BisI GCNGC 5 cut(s) 599, 648, 868, 1158, 1161
BlsI GCNGC 5 cut(s) 600, 649, 869, 1159, 1162
Bme1390I CCNGG 3 cut(s) 158, 362, 1078
Bme18I GGWCC 3 cut(s) 364, 475, 528
BmeRI GACNNNNNGTC 1 cut(s) 1342
BmeT110I CYCGRG 1 cut(s) 964
BmgBI CACGTC 1 cut(s) 268
BmgT120I GGNCC 6 cut(s) 160, 175, 352, 364, 475, 528
BmiI GGNNCC 3 cut(s) 365, 548, 615
BmrFI CCNGG 3 cut(s) 158, 362, 1078
BmsI GCATC 6 cut(s) 371, 562, 585, 1081, 1104, 1319
BoxI GACNNNNGTC 1 cut(s) 480
BpiI GAAGAC 2 cut(s) 208, 1334
BpuEI CTTGAG 2 cut(s) 692, 1024
BpuMI CCSGG 2 cut(s) 362, 1078
BsaJI CCNNGG 4 cut(s) 156, 157, 348, 355
BsaWI WCCGGW 2 cut(s) 530, 549
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 5 cut(s) 172, 360, 361, 439, 556
Bse118I RCCGGY 1 cut(s) 530
Bse1I ACTGG 2 cut(s) 419, 1205
Bse3DI GCAATG 2 cut(s) 1015, 1148
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 4 cut(s) 156, 157, 348, 355
BseGI GGATG 6 cut(s) 69, 258, 477, 719, 730, 903
BseLI CCNNNNNNNGG 5 cut(s) 172, 360, 361, 439, 556
BseMI GCAATG 2 cut(s) 1015, 1148
BseMII CTCAG 3 cut(s) 382, 521, 768
BseNI ACTGG 2 cut(s) 419, 1205
BseRI GAGGAG 5 cut(s) 23, 46, 155, 794, 887
BseX3I CGGCCG 1 cut(s) 358
BseXI GCAGC 4 cut(s) 610, 634, 1144, 1147
BseYI CCCAGC 2 cut(s) 87, 195
BsgI GTGCAG 1 cut(s) 939
Bsh1285I CGRYCG 1 cut(s) 361
BshFI GGCC 6 cut(s) 162, 176, 353, 360, 378, 468
BshNI GGYRCC 2 cut(s) 546, 613
BshTI ACCGGT 1 cut(s) 530
BsiEI CGRYCG 1 cut(s) 361
BsiHKCI CYCGRG 1 cut(s) 964
BsiSI CCGG 5 cut(s) 361, 469, 531, 550, 1077
BslFI GGGAC 2 cut(s) 254, 377
BslI CCNNNNNNNGG 5 cut(s) 172, 360, 361, 439, 556
BsmAI GTCTC 1 cut(s) 1329
BsmFI GGGAC 2 cut(s) 254, 377
BsmI GAATGC 4 cut(s) 625, 643, 701, 838
BsnI GGCC 6 cut(s) 162, 176, 353, 360, 378, 468
BsoBI CYCGRG 1 cut(s) 964
Bsp143I GATC 2 cut(s) 840, 1194
BspACI CCGC 3 cut(s) 605, 867, 1168
BspANI GGCC 6 cut(s) 162, 176, 353, 360, 378, 468
BspCNI CTCAG 3 cut(s) 381, 520, 769
BspHI TCATGA 1 cut(s) 691
BspLI GGNNCC 3 cut(s) 365, 548, 615
BspMI ACCTGC 1 cut(s) 230
BspT107I GGYRCC 2 cut(s) 546, 613
BsrBI CCGCTC 1 cut(s) 867
BsrDI GCAATG 2 cut(s) 1015, 1148
BsrFI RCCGGY 1 cut(s) 530
BsrI ACTGG 2 cut(s) 419, 1205
BssAI RCCGGY 1 cut(s) 530
BssECI CCNNGG 4 cut(s) 156, 157, 348, 355
BssMI GATC 2 cut(s) 840, 1194
BssSI CACGAG 1 cut(s) 1071
BssT1I CCWWGG 1 cut(s) 348
Bst2BI CACGAG 1 cut(s) 1071
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 804
BstC8I GCNNGC 3 cut(s) 386, 603, 1155
BstDEI CTNAG 3 cut(s) 368, 507, 777
BstDSI CCRYGG 1 cut(s) 355
BstF5I GGATG 6 cut(s) 69, 258, 477, 719, 730, 903
BstH2I RGCGCY 1 cut(s) 671
BstHHI GCGC 2 cut(s) 670, 1209
BstKTI GATC 2 cut(s) 843, 1197
BstMAI GTCTC 1 cut(s) 1329
BstMBI GATC 2 cut(s) 840, 1194
BstMCI CGRYCG 1 cut(s) 361
BstMWI GCNNNNNNNGC 5 cut(s) 581, 598, 647, 653, 1123
BstNI CCWGG 1 cut(s) 158
BstNSI RCATGY 3 cut(s) 295, 605, 768
BstPAI GACNNNNGTC 1 cut(s) 480
BstSCI CCNGG 3 cut(s) 156, 360, 1076
BstV1I GCAGC 4 cut(s) 610, 634, 1144, 1147
BstV2I GAAGAC 2 cut(s) 208, 1334
BstZI CGGCCG 1 cut(s) 358
BsuRI GGCC 6 cut(s) 162, 176, 353, 360, 378, 468
BtgI CCRYGG 1 cut(s) 355
BtrI CACGTC 1 cut(s) 268
BtsCI GGATG 6 cut(s) 69, 258, 477, 719, 730, 903
BtsIMutI CAGTG 2 cut(s) 412, 836
BveI ACCTGC 1 cut(s) 230
Cac8I GCNNGC 3 cut(s) 386, 603, 1155
CciI TCATGA 1 cut(s) 691
CfoI GCGC 2 cut(s) 670, 1209
Cfr10I RCCGGY 1 cut(s) 530
Cfr13I GGNCC 6 cut(s) 160, 175, 352, 364, 475, 528
CseI GACGC 1 cut(s) 1024
Csp6I GTAC 1 cut(s) 547
CspAI ACCGGT 1 cut(s) 530
CviAII CATG 7 cut(s) 212, 292, 395, 602, 692, 765, 1246
CviQI GTAC 1 cut(s) 547
DdeI CTNAG 3 cut(s) 368, 507, 777
DpnI GATC 2 cut(s) 842, 1196
DpnII GATC 2 cut(s) 840, 1194
DriI GACNNNNNGTC 1 cut(s) 1342
EaeI YGGCCR 2 cut(s) 358, 466
EagI CGGCCG 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 804
Eam1105I GACNNNNNGTC 1 cut(s) 1342
EarI CTCTTC 1 cut(s) 804
EciI GGCGGA 1 cut(s) 1183
EclXI CGGCCG 1 cut(s) 358
Eco130I CCWWGG 1 cut(s) 348
Eco32I GATATC 1 cut(s) 424
Eco47I GGWCC 3 cut(s) 364, 475, 528
Eco52I CGGCCG 1 cut(s) 358
Eco88I CYCGRG 1 cut(s) 964
EcoO109I RGGNCCY 1 cut(s) 364
EcoRII CCWGG 1 cut(s) 156
EcoRV GATATC 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 348
EcoT22I ATGCAT 1 cut(s) 701
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 7 cut(s) 215, 295, 398, 605, 695, 768, 1249
FaqI GGGAC 2 cut(s) 254, 377
FatI CATG 7 cut(s) 211, 291, 394, 601, 691, 764, 1245
FauI CCCGC 1 cut(s) 598
FbaI TGATCA 1 cut(s) 840
FblI GTMKAC 1 cut(s) 985
Fnu4HI GCNGC 5 cut(s) 599, 648, 868, 1158, 1161
FokI GGATG 6 cut(s) 56, 245, 484, 726, 737, 910
Fsp4HI GCNGC 5 cut(s) 599, 648, 868, 1158, 1161
FspBI CTAG 1 cut(s) 1128
FspI TGCGCA 1 cut(s) 1208
GlaI GCGC 2 cut(s) 669, 1208
GluI GCNGC 5 cut(s) 599, 648, 868, 1158, 1161
GsaI CCCAGC 2 cut(s) 91, 199
HaeII RGCGCY 1 cut(s) 671
HaeIII GGCC 6 cut(s) 162, 176, 353, 360, 378, 468
HapII CCGG 5 cut(s) 361, 469, 531, 550, 1077
HgaI GACGC 1 cut(s) 1024
HhaI GCGC 2 cut(s) 670, 1209
Hin1II CATG 7 cut(s) 215, 295, 398, 605, 695, 768, 1249
Hin6I GCGC 2 cut(s) 668, 1207
HinP1I GCGC 2 cut(s) 668, 1207
HinfI GANTC 2 cut(s) 30, 688
HpaII CCGG 5 cut(s) 361, 469, 531, 550, 1077
HphI GGTGA 6 cut(s) 88, 109, 133, 184, 211, 646
Hpy166II GTNNAC 2 cut(s) 528, 986
Hpy188I TCNGA 5 cut(s) 239, 371, 510, 1219, 1348
Hpy188III TCNNGA 3 cut(s) 433, 692, 1085
Hpy8I GTNNAC 2 cut(s) 528, 986
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 5 cut(s) 145, 191, 253, 902, 1300
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4IV ACGT 3 cut(s) 15, 267, 429
HpyCH4V TGCA 9 cut(s) 225, 297, 388, 598, 699, 836, 920, 1224, 1303
HpyF10VI GCNNNNNNNGC 5 cut(s) 581, 598, 647, 653, 1123
HpyF3I CTNAG 3 cut(s) 368, 507, 777
HpySE526I ACGT 3 cut(s) 15, 267, 429
Hsp92II CATG 7 cut(s) 215, 295, 398, 605, 695, 768, 1249
HspAI GCGC 2 cut(s) 668, 1207
KpnI GGTACC 1 cut(s) 550
Ksp22I TGATCA 1 cut(s) 840
Kzo9I GATC 2 cut(s) 840, 1194
LmnI GCTCC 2 cut(s) 59, 204
Lsp1109I GCAGC 4 cut(s) 610, 634, 1144, 1147
LweI GCATC 6 cut(s) 371, 562, 585, 1081, 1104, 1319
MaeI CTAG 1 cut(s) 1128
MaeII ACGT 3 cut(s) 15, 267, 429
MaeIII GTNAC 5 cut(s) 16, 410, 625, 928, 959
MalI GATC 2 cut(s) 842, 1196
MbiI CCGCTC 1 cut(s) 867
MboI GATC 2 cut(s) 840, 1194
MboII GAAGA 5 cut(s) 208, 821, 826, 1100, 1339
MluCI AATT 5 cut(s) 404, 731, 990, 1286, 1315
MlyI GAGTC 1 cut(s) 24
MmeI TCCRAC 2 cut(s) 702, 1197
Mph1103I ATGCAT 1 cut(s) 701
MseI TTAA 2 cut(s) 540, 1106
MslI CAYNNNNRTG 4 cut(s) 290, 393, 417, 606
MspI CCGG 5 cut(s) 361, 469, 531, 550, 1077
MspR9I CCNGG 3 cut(s) 158, 362, 1078
Mva1269I GAATGC 4 cut(s) 625, 643, 701, 838
MvaI CCWGG 1 cut(s) 158
MwoI GCNNNNNNNGC 5 cut(s) 581, 598, 647, 653, 1123
NciI CCSGG 2 cut(s) 362, 1078
NdeII GATC 2 cut(s) 840, 1194
NlaIII CATG 7 cut(s) 215, 295, 398, 605, 695, 768, 1249
NlaIV GGNNCC 3 cut(s) 365, 548, 615
NmeAIII GCCGAG 3 cut(s) 419, 1056, 1144
NmuCI GTSAC 5 cut(s) 16, 410, 625, 928, 959
NsbI TGCGCA 1 cut(s) 1208
NsiI ATGCAT 1 cut(s) 701
NspI RCATGY 3 cut(s) 295, 605, 768
OliI CACNNNNGTG 1 cut(s) 417
PaeI GCATGC 1 cut(s) 605
PagI TCATGA 1 cut(s) 691
PaqCI CACCTGC 1 cut(s) 230
PasI CCCWGGG 1 cut(s) 157
PciI ACATGT 2 cut(s) 291, 764
PcsI WCGNNNNNNNCGW 1 cut(s) 921
PctI GAATGC 4 cut(s) 625, 643, 701, 838
PfeI GAWTC 1 cut(s) 688
PflFI GACNNNGTC 1 cut(s) 1189
PinAI ACCGGT 1 cut(s) 530
PkrI GCNGC 5 cut(s) 600, 649, 869, 1159, 1162
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
PpuMI RGGWCCY 1 cut(s) 364
PscI ACATGT 2 cut(s) 291, 764
PshAI GACNNNNGTC 1 cut(s) 480
Psp5II RGGWCCY 1 cut(s) 364
Psp6I CCWGG 1 cut(s) 156
PspFI CCCAGC 2 cut(s) 87, 195
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 3 cut(s) 365, 548, 615
PspPI GGNCC 6 cut(s) 160, 175, 352, 364, 475, 528
PspPPI RGGWCCY 1 cut(s) 364
PsyI GACNNNGTC 1 cut(s) 1189
RsaI GTAC 1 cut(s) 548
RsaNI GTAC 1 cut(s) 547
RseI CAYNNNNRTG 4 cut(s) 290, 393, 417, 606
SaqAI TTAA 2 cut(s) 540, 1106
SatI GCNGC 5 cut(s) 599, 648, 868, 1158, 1161
Sau3AI GATC 2 cut(s) 840, 1194
Sau96I GGNCC 6 cut(s) 160, 175, 352, 364, 475, 528
SchI GAGTC 1 cut(s) 24
ScrFI CCNGG 3 cut(s) 158, 362, 1078
SfaNI GCATC 6 cut(s) 371, 562, 585, 1081, 1104, 1319
SinI GGWCC 3 cut(s) 364, 475, 528
SmiMI CAYNNNNRTG 4 cut(s) 290, 393, 417, 606
SmlI CTYRAG 2 cut(s) 671, 1003
SmoI CTYRAG 2 cut(s) 671, 1003
SphI GCATGC 1 cut(s) 605
Sse9I AATT 5 cut(s) 404, 731, 990, 1286, 1315
SsiI CCGC 3 cut(s) 605, 867, 1168
SspMI CTAG 1 cut(s) 1128
StyD4I CCNGG 3 cut(s) 156, 360, 1076
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 1 cut(s) 124
TaiI ACGT 3 cut(s) 18, 270, 432
TaqI TCGA 4 cut(s) 484, 588, 798, 1193
TasI AATT 5 cut(s) 404, 731, 990, 1286, 1315
TauI GCSGC 1 cut(s) 870
TfiI GAWTC 1 cut(s) 688
Tru1I TTAA 2 cut(s) 540, 1106
Tru9I TTAA 2 cut(s) 540, 1106
TscAI CASTG 2 cut(s) 419, 843
TseFI GTSAC 5 cut(s) 16, 410, 625, 928, 959
TseI GCWGC 4 cut(s) 598, 647, 1157, 1160
Tsp45I GTSAC 5 cut(s) 16, 410, 625, 928, 959
TspDTI ATGAA 5 cut(s) 127, 513, 680, 708, 1137
TspRI CASTG 2 cut(s) 419, 843
Tth111I GACNNNGTC 1 cut(s) 1189
VpaK11BI GGWCC 3 cut(s) 364, 475, 528
XapI RAATTY 2 cut(s) 990, 1315
XceI RCATGY 3 cut(s) 295, 605, 768
XmiI GTMKAC 1 cut(s) 985
XspI CTAG 1 cut(s) 1128
Zsp2I ATGCAT 1 cut(s) 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.