Rh6AG347700

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0015846
Physical Location & Seq
Reverse (-)
54803660 .. 54805250
1591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG347700.1

Sequence Viewer

Length: 1398 bp
ATGTCGCAGTTGAACGCAACCACCAGACTCCTCTCACTCCTACCCAACTGCTCCTCCATCACTCACATCCATCAAATCCAAGCCCAGCTCATCACCCAAAACCTCCACTCAATCACCACCGTCGCCTCCACCTTCATCACCGCGTGTAAAACCCTCGGCCTCCTCCACTTGGCCCACCTTCACTTACTCACCCAGCTCCCAAACCCCCATGTCTTCACCTGCAACTCCCTCATCAGAGCCTTCTCTCATTCCCACATCCCTCACGTCCCTCTCTCTATATACACCCACATGCGCAAAACCTCCATTCCTCCCAATCACTACACATTTCCTGTTCTTTTCAAGTCCTTGTCCGACGGCCGGGACCTCAGACAAGGCCGATGCTTGCATGCCCATGTCGTCAAATTGGGTCAGTGGTGTGATATCTACGTCCAGAACTCGGCTCTGGATTTGTATGCTTCGTGTGGCCGGATGGACCTATGTCGAAAGGTGTTTGATGAAATGCCTCAGAGAGATGTTGTGTCGTGGACCGGTTTGATTAAGGGGTACCGGAACTTGGGGAAGTATGACAATGCGTTGATTGCTTTCGAGCAGATGCAGTATGCGGGTGTGGTGCCGAATGCTGTGACGATGGTGAATGCTTTGGCTGCGTGTGCGAGTTTCGGGGCGCTTGAGATGGGCGTGTGGATTCATGAATGCATAAGGAGGGAGGGATGGGAGTTGGATGTGAAATTGGGAACAGCGTTGATTGATTTGTATGGAACATGTGGGAAAACTGAGGAGGCTTTGGCTGTTTTCGATACGATGGAAGAGAAGAACACATTTACTTGGAATGCACTGATCAAGGGGTTTGCTCTTGCCAAGAGCGGCGAGGAGGCAGTTTGGTGGTTTGGGAGGATGGAACAAGAAGGGTTCGGTGCAGACGAAGTGACTTTGGTGGAACTGCTTTCTGCTTGTAGTCACTCGGGGTTGGTAGATGTTGGTAGACAAATTTTTAGTTCCTTGAGCAATGGGAAGTATGGATTTTTGCCGAGCGTCAAGCATTATGCTTGTATGATTGACCTCTTGGCTCGTGCCGGGTGTCTTGAAGATGCTTTCAAATGCTTAAGAGAGATGCCTTATGAGCCTAGTAAAGCTATGTTGGGGTCATTGCTGGCTGCCGGTAAAACTTATGGGGACTTGGAGTTGAGCGAGTTTGCAGCTACAAAGCTTGTTGAACTGGAGCCGGGGAATAGTGCTTACTATATCTTGCTGTCGAATTTGTATGCCGAGATGGGTAGATGGGATGATGTTGAGAAAGTGAGGGCGATGATGAAAGAGAGAGACCTTAAGAAAGACTTGGGTTGTAGCTCGGCGGAATGCAAACCCTTTGACCAAGTTGATCAACTAGTAGCGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00630 ko00910 ko01200 map00460 map00630 map00910 map01200
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

465

Amino Acids

51.77

Weight (kDa)

6.19

Isoelectric Point (pI)

36.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 69 - 117 1.3e-06 PPR repeat family
PPR_2 PF13041 170 - 216 2.8e-07 PPR repeat family
PPR PF01535 274 - 304 4.8e-06 PPR repeat
E_motif PF20431 390 - 450 7.8e-22 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015846)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43790
fragaria_vesca FvH4_2g25230
malus_domestica MD03G1282600.v1.1 MD11G1303700.v1.1
prunus_persica Prupe.8G257000_v2.0.a1
pyrus_communis pycom11g26530
rosa_chinensis RchiOBHm_Chr6g0293351
rosa_laevigata RLG00000011953
rosa_multiflora Rmu_sc0006269.1_g000030
rosa_roxburghii Rroxscaffold_7G00174230
rosa_rugosa Rorug06G0234800
rosa_samantha Rh6AG347700 Rh6BG355300 Rh6DG348500
rosa_wichuraiana Rw6G030250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 227
Acc16I TGCGCA 1 cut(s) 293
Acc36I ACCTGC 1 cut(s) 227
Acc65I GGTACC 1 cut(s) 543
AccB1I GGYRCC 2 cut(s) 543, 610
AccBSI CCGCTC 1 cut(s) 864
AccI GTMKAC 1 cut(s) 982
AccII CGCG 1 cut(s) 143
AciI CCGC 4 cut(s) 141, 602, 864, 1352
AcoI YGGCCR 2 cut(s) 355, 463
AcsI RAATTY 2 cut(s) 987, 1255
AdeI CACNNNGTG 1 cut(s) 144
AfaI GTAC 1 cut(s) 545
AfiI CCNNNNNNNGG 4 cut(s) 169, 357, 436, 553
AflII CTTAAG 2 cut(s) 1102, 1325
AflIII ACRYGT 1 cut(s) 761
AgeI ACCGGT 1 cut(s) 527
AgsI TTSAA 5 cut(s) 13, 340, 1085, 1096, 1214
AhlI ACTAGT 1 cut(s) 1384
AjiI CACGTC 1 cut(s) 265
AluBI AGCT 6 cut(s) 88, 196, 1133, 1199, 1207, 1347
AluI AGCT 6 cut(s) 88, 196, 1133, 1199, 1207, 1347
Alw26I GTCTC 1 cut(s) 1314
Ama87I CYCGRG 1 cut(s) 961
AoxI GGCC 5 cut(s) 157, 171, 355, 373, 463
ApeKI GCWGC 3 cut(s) 644, 1154, 1196
ApoI RAATTY 2 cut(s) 987, 1255
AsiGI ACCGGT 1 cut(s) 527
Asp718I GGTACC 1 cut(s) 543
AspLEI GCGC 3 cut(s) 294, 667, 1393
AspS9I GGNCC 4 cut(s) 172, 361, 472, 525
AsuC2I CCSGG 3 cut(s) 359, 1075, 1224
AsuHPI GGTGA 6 cut(s) 85, 106, 130, 181, 208, 643
AvaI CYCGRG 1 cut(s) 961
AvaII GGWCC 3 cut(s) 361, 472, 525
BanI GGYRCC 2 cut(s) 543, 610
BauI CACGAG 1 cut(s) 1068
BbsI GAAGAC 1 cut(s) 205
BbvI GCAGC 3 cut(s) 631, 1141, 1208
BceAI ACGGC 1 cut(s) 370
BclI TGATCA 2 cut(s) 837, 1378
BcnI CCSGG 3 cut(s) 359, 1075, 1224
BcoDI GTCTC 1 cut(s) 1314
BcuI ACTAGT 1 cut(s) 1384
BfaI CTAG 2 cut(s) 1125, 1385
BfoI RGCGCY 1 cut(s) 668
BfrI CTTAAG 2 cut(s) 1102, 1325
BfuAI ACCTGC 1 cut(s) 227
BisI GCNGC 4 cut(s) 645, 865, 1155, 1197
BlsI GCNGC 4 cut(s) 646, 866, 1156, 1198
Bme1390I CCNGG 3 cut(s) 359, 1075, 1224
Bme18I GGWCC 3 cut(s) 361, 472, 525
BmeT110I CYCGRG 1 cut(s) 961
BmgBI CACGTC 1 cut(s) 265
BmgT120I GGNCC 4 cut(s) 172, 361, 472, 525
BmiI GGNNCC 4 cut(s) 362, 545, 612, 1221
BmrFI CCNGG 3 cut(s) 359, 1075, 1224
BmsI GCATC 4 cut(s) 368, 582, 1078, 1101
BoxI GACNNNNGTC 1 cut(s) 477
BpiI GAAGAC 1 cut(s) 205
BpmI CTGGAG 1 cut(s) 1238
BpuEI CTTGAG 2 cut(s) 689, 1021
BpuMI CCSGG 3 cut(s) 359, 1075, 1224
BsaI GGTCTC 1 cut(s) 1314
BsaJI CCNNGG 2 cut(s) 154, 1223
BsaWI WCCGGW 2 cut(s) 527, 546
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 4 cut(s) 169, 357, 436, 553
Bse118I RCCGGY 2 cut(s) 527, 1157
Bse1I ACTGG 1 cut(s) 1221
Bse3DI GCAATG 2 cut(s) 1012, 1145
BseDI CCNNGG 2 cut(s) 154, 1223
BseGI GGATG 7 cut(s) 66, 255, 474, 716, 727, 900, 1288
BseLI CCNNNNNNNGG 4 cut(s) 169, 357, 436, 553
BseMI GCAATG 2 cut(s) 1012, 1145
BseMII CTCAG 3 cut(s) 379, 518, 765
BseNI ACTGG 1 cut(s) 1221
BseRI GAGGAG 5 cut(s) 20, 43, 152, 791, 884
BseX3I CGGCCG 1 cut(s) 355
BseXI GCAGC 3 cut(s) 631, 1141, 1208
BseYI CCCAGC 2 cut(s) 84, 192
BsgI GTGCAG 1 cut(s) 936
Bsh1236I CGCG 1 cut(s) 143
Bsh1285I CGRYCG 1 cut(s) 358
BshFI GGCC 5 cut(s) 159, 173, 357, 375, 465
BshNI GGYRCC 2 cut(s) 543, 610
BshTI ACCGGT 1 cut(s) 527
BsiEI CGRYCG 1 cut(s) 358
BsiHKCI CYCGRG 1 cut(s) 961
BsiSI CCGG 7 cut(s) 358, 466, 528, 547, 1074, 1158, 1223
BslFI GGGAC 3 cut(s) 251, 374, 1187
BslI CCNNNNNNNGG 4 cut(s) 169, 357, 436, 553
BsmAI GTCTC 1 cut(s) 1314
BsmFI GGGAC 3 cut(s) 251, 374, 1187
BsmI GAATGC 5 cut(s) 622, 640, 698, 835, 1361
BsnI GGCC 5 cut(s) 159, 173, 357, 375, 465
Bso31I GGTCTC 1 cut(s) 1314
BsoBI CYCGRG 1 cut(s) 961
Bsp143I GATC 2 cut(s) 837, 1378
BspACI CCGC 4 cut(s) 141, 602, 864, 1352
BspANI GGCC 5 cut(s) 159, 173, 357, 375, 465
BspCNI CTCAG 3 cut(s) 378, 517, 766
BspFNI CGCG 1 cut(s) 143
BspHI TCATGA 1 cut(s) 688
BspLI GGNNCC 4 cut(s) 362, 545, 612, 1221
BspMI ACCTGC 1 cut(s) 227
BspT107I GGYRCC 2 cut(s) 543, 610
BspTI CTTAAG 2 cut(s) 1102, 1325
BspTNI GGTCTC 1 cut(s) 1314
BsrBI CCGCTC 1 cut(s) 864
BsrDI GCAATG 2 cut(s) 1012, 1145
BsrFI RCCGGY 2 cut(s) 527, 1157
BsrI ACTGG 1 cut(s) 1221
BssAI RCCGGY 2 cut(s) 527, 1157
BssECI CCNNGG 2 cut(s) 154, 1223
BssMI GATC 2 cut(s) 837, 1378
BssSI CACGAG 1 cut(s) 1068
Bst2BI CACGAG 1 cut(s) 1068
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 1 cut(s) 801
BstAFI CTTAAG 2 cut(s) 1102, 1325
BstC8I GCNNGC 3 cut(s) 383, 387, 1152
BstDEI CTNAG 3 cut(s) 365, 504, 774
BstF5I GGATG 7 cut(s) 66, 255, 474, 716, 727, 900, 1288
BstFNI CGCG 1 cut(s) 143
BstH2I RGCGCY 1 cut(s) 668
BstHHI GCGC 3 cut(s) 294, 667, 1393
BstKTI GATC 2 cut(s) 840, 1381
BstMAI GTCTC 1 cut(s) 1314
BstMBI GATC 2 cut(s) 837, 1378
BstMCI CGRYCG 1 cut(s) 358
BstMWI GCNNNNNNNGC 4 cut(s) 578, 644, 650, 1120
BstNSI RCATGY 3 cut(s) 292, 389, 765
BstPAI GACNNNNGTC 1 cut(s) 477
BstSCI CCNGG 3 cut(s) 357, 1073, 1222
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 3 cut(s) 631, 1141, 1208
BstV2I GAAGAC 1 cut(s) 205
BstZI CGGCCG 1 cut(s) 355
BsuRI GGCC 5 cut(s) 159, 173, 357, 375, 465
BtgZI GCGATG 1 cut(s) 1319
BtrI CACGTC 1 cut(s) 265
BtsCI GGATG 7 cut(s) 66, 255, 474, 716, 727, 900, 1288
BtsIMutI CAGTG 2 cut(s) 416, 833
BveI ACCTGC 1 cut(s) 227
Cac8I GCNNGC 3 cut(s) 383, 387, 1152
CciI TCATGA 1 cut(s) 688
CfoI GCGC 3 cut(s) 294, 667, 1393
Cfr10I RCCGGY 2 cut(s) 527, 1157
Cfr13I GGNCC 4 cut(s) 172, 361, 472, 525
CseI GACGC 1 cut(s) 1021
Csp6I GTAC 1 cut(s) 544
CspAI ACCGGT 1 cut(s) 527
CviAII CATG 6 cut(s) 209, 289, 386, 392, 689, 762
CviQI GTAC 1 cut(s) 544
DdeI CTNAG 3 cut(s) 365, 504, 774
DpnI GATC 2 cut(s) 839, 1380
DpnII GATC 2 cut(s) 837, 1378
DraIII CACNNNGTG 1 cut(s) 144
EaeI YGGCCR 2 cut(s) 355, 463
EagI CGGCCG 1 cut(s) 355
Eam1104I CTCTTC 1 cut(s) 801
EarI CTCTTC 1 cut(s) 801
EciI GGCGGA 1 cut(s) 1367
EclXI CGGCCG 1 cut(s) 355
Eco31I GGTCTC 1 cut(s) 1314
Eco32I GATATC 1 cut(s) 421
Eco47I GGWCC 3 cut(s) 361, 472, 525
Eco52I CGGCCG 1 cut(s) 355
Eco88I CYCGRG 1 cut(s) 961
EcoO109I RGGNCCY 1 cut(s) 361
EcoRV GATATC 1 cut(s) 421
EcoT22I ATGCAT 1 cut(s) 698
FaeI CATG 6 cut(s) 212, 292, 389, 395, 692, 765
FalI AAGNNNNNCTT 2 cut(s) 1319, 1351
FaqI GGGAC 3 cut(s) 251, 374, 1187
FatI CATG 6 cut(s) 208, 288, 385, 391, 688, 761
FauI CCCGC 1 cut(s) 595
FbaI TGATCA 2 cut(s) 837, 1378
FblI GTMKAC 1 cut(s) 982
Fnu4HI GCNGC 4 cut(s) 645, 865, 1155, 1197
FokI GGATG 7 cut(s) 53, 242, 481, 723, 734, 907, 1295
Fsp4HI GCNGC 4 cut(s) 645, 865, 1155, 1197
FspBI CTAG 2 cut(s) 1125, 1385
FspI TGCGCA 1 cut(s) 293
GlaI GCGC 3 cut(s) 293, 666, 1392
GluI GCNGC 4 cut(s) 645, 865, 1155, 1197
GsaI CCCAGC 2 cut(s) 88, 196
GsuI CTGGAG 1 cut(s) 1238
HaeII RGCGCY 1 cut(s) 668
HaeIII GGCC 5 cut(s) 159, 173, 357, 375, 465
HapII CCGG 7 cut(s) 358, 466, 528, 547, 1074, 1158, 1223
HgaI GACGC 1 cut(s) 1021
HhaI GCGC 3 cut(s) 294, 667, 1393
Hin1II CATG 6 cut(s) 212, 292, 389, 395, 692, 765
Hin6I GCGC 3 cut(s) 292, 665, 1391
HinP1I GCGC 3 cut(s) 292, 665, 1391
HindIII AAGCTT 1 cut(s) 1205
HinfI GANTC 2 cut(s) 27, 685
HpaII CCGG 7 cut(s) 358, 466, 528, 547, 1074, 1158, 1223
HphI GGTGA 6 cut(s) 85, 106, 130, 181, 208, 643
Hpy166II GTNNAC 2 cut(s) 525, 983
Hpy188I TCNGA 4 cut(s) 236, 352, 368, 507
Hpy188III TCNNGA 4 cut(s) 430, 443, 689, 1082
Hpy8I GTNNAC 2 cut(s) 525, 983
Hpy99I CGWCG 2 cut(s) 125, 356
HpyAV CCTTC 4 cut(s) 142, 188, 250, 899
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 2 cut(s) 264, 426
HpyCH4V TGCA 8 cut(s) 222, 385, 595, 696, 833, 917, 1196, 1359
HpyF10VI GCNNNNNNNGC 4 cut(s) 578, 644, 650, 1120
HpyF3I CTNAG 3 cut(s) 365, 504, 774
HpySE526I ACGT 2 cut(s) 264, 426
Hsp92II CATG 6 cut(s) 212, 292, 389, 395, 692, 765
HspAI GCGC 3 cut(s) 292, 665, 1391
KpnI GGTACC 1 cut(s) 547
Ksp22I TGATCA 2 cut(s) 837, 1378
Kzo9I GATC 2 cut(s) 837, 1378
LmnI GCTCC 3 cut(s) 56, 201, 1219
Lsp1109I GCAGC 3 cut(s) 631, 1141, 1208
LweI GCATC 4 cut(s) 368, 582, 1078, 1101
MaeI CTAG 2 cut(s) 1125, 1385
MaeII ACGT 2 cut(s) 264, 426
MaeIII GTNAC 3 cut(s) 622, 925, 956
MalI GATC 2 cut(s) 839, 1380
MbiI CCGCTC 1 cut(s) 864
MboI GATC 2 cut(s) 837, 1378
MboII GAAGA 4 cut(s) 205, 818, 823, 1097
MluCI AATT 4 cut(s) 401, 728, 987, 1255
MlyI GAGTC 1 cut(s) 21
MmeI TCCRAC 2 cut(s) 375, 699
Mph1103I ATGCAT 1 cut(s) 698
MseI TTAA 3 cut(s) 537, 1103, 1326
MslI CAYNNNNRTG 2 cut(s) 287, 390
MspCI CTTAAG 2 cut(s) 1102, 1325
MspI CCGG 7 cut(s) 358, 466, 528, 547, 1074, 1158, 1223
MspR9I CCNGG 3 cut(s) 359, 1075, 1224
Mva1269I GAATGC 5 cut(s) 622, 640, 698, 835, 1361
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 4 cut(s) 578, 644, 650, 1120
NciI CCSGG 3 cut(s) 359, 1075, 1224
NdeII GATC 2 cut(s) 837, 1378
NlaIII CATG 6 cut(s) 212, 292, 389, 395, 692, 765
NlaIV GGNNCC 4 cut(s) 362, 545, 612, 1221
NmeAIII GCCGAG 5 cut(s) 135, 416, 1053, 1291, 1328
NmuCI GTSAC 3 cut(s) 622, 925, 956
NsbI TGCGCA 1 cut(s) 293
NsiI ATGCAT 1 cut(s) 698
NspI RCATGY 3 cut(s) 292, 389, 765
PaeI GCATGC 1 cut(s) 389
PagI TCATGA 1 cut(s) 688
PaqCI CACCTGC 1 cut(s) 227
PciI ACATGT 1 cut(s) 761
PcsI WCGNNNNNNNCGW 1 cut(s) 918
PctI GAATGC 5 cut(s) 622, 640, 698, 835, 1361
PfeI GAWTC 1 cut(s) 685
PinAI ACCGGT 1 cut(s) 527
PkrI GCNGC 4 cut(s) 646, 866, 1156, 1198
PleI GAGTC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 21
PpuMI RGGWCCY 1 cut(s) 361
PscI ACATGT 1 cut(s) 761
PshAI GACNNNNGTC 1 cut(s) 477
Psp5II RGGWCCY 1 cut(s) 361
PspFI CCCAGC 2 cut(s) 84, 192
PspN4I GGNNCC 4 cut(s) 362, 545, 612, 1221
PspPI GGNCC 4 cut(s) 172, 361, 472, 525
PspPPI RGGWCCY 1 cut(s) 361
RsaI GTAC 1 cut(s) 545
RsaNI GTAC 1 cut(s) 544
RseI CAYNNNNRTG 2 cut(s) 287, 390
SaqAI TTAA 3 cut(s) 537, 1103, 1326
SatI GCNGC 4 cut(s) 645, 865, 1155, 1197
Sau3AI GATC 2 cut(s) 837, 1378
Sau96I GGNCC 4 cut(s) 172, 361, 472, 525
SchI GAGTC 1 cut(s) 21
ScrFI CCNGG 3 cut(s) 359, 1075, 1224
SfaNI GCATC 4 cut(s) 368, 582, 1078, 1101
SinI GGWCC 3 cut(s) 361, 472, 525
SmiMI CAYNNNNRTG 2 cut(s) 287, 390
SmlI CTYRAG 4 cut(s) 668, 1000, 1102, 1325
SmoI CTYRAG 4 cut(s) 668, 1000, 1102, 1325
SpeI ACTAGT 1 cut(s) 1384
SphI GCATGC 1 cut(s) 389
Sse9I AATT 4 cut(s) 401, 728, 987, 1255
SsiI CCGC 4 cut(s) 141, 602, 864, 1352
SspMI CTAG 2 cut(s) 1125, 1385
StyD4I CCNGG 3 cut(s) 357, 1073, 1222
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 2 cut(s) 267, 429
TaqI TCGA 4 cut(s) 481, 585, 795, 1253
TasI AATT 4 cut(s) 401, 728, 987, 1255
TauI GCSGC 1 cut(s) 867
TfiI GAWTC 1 cut(s) 685
Tru1I TTAA 3 cut(s) 537, 1103, 1326
Tru9I TTAA 3 cut(s) 537, 1103, 1326
TscAI CASTG 2 cut(s) 416, 840
TseFI GTSAC 3 cut(s) 622, 925, 956
TseI GCWGC 3 cut(s) 644, 1154, 1196
Tsp45I GTSAC 3 cut(s) 622, 925, 956
TspDTI ATGAA 5 cut(s) 124, 510, 677, 705, 1325
TspRI CASTG 2 cut(s) 416, 840
Vha464I CTTAAG 2 cut(s) 1102, 1325
VpaK11BI GGWCC 3 cut(s) 361, 472, 525
XapI RAATTY 2 cut(s) 987, 1255
XceI RCATGY 3 cut(s) 292, 389, 765
XmiI GTMKAC 1 cut(s) 982
XspI CTAG 2 cut(s) 1125, 1385
Zsp2I ATGCAT 1 cut(s) 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.