RchiOBHm_Chr6g0293351

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0015846
Physical Location & Seq
Reverse (-)
56058439 .. 56060179
1741 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26322

Sequence Viewer

Length: 1401 bp
ATGTCGCAGTTGAACGTCACAACCACGAGACTCCTCTCACTCCTACCCAACTGCTCCTCCATCACTCACATCCATCAAATCCAAGCCCAGCTCATCACCCAAAACCTCCACTCAATCACTACCGTCGCCTCCACCTTCATCACCGCCTGTAAAACCCTCGGCCTCCTCCACTTGGCCCACCTTCACTTACTCACCCAGCTCCCAAACCCCCATGTCTTCACCTGCAACTCCCTCATCAGAGCCTTCTCTCATTCCCACATCCCTCACGTCCCTCTCTCTGTATACACCCACATGCGCAAAACCTCCATTCCTCCCAATCACTACACATTTCCTGTTCTTTTCAAGTCCTTGTCCGACGGCCGGGACCTCAGACAAGGCCGATGCTTGCATACCCATGTCGTCAAATTGGGTCAGTGGTGTGATATCTACGTCCAGAACTCGGCTCTGGATTTGTACGCTTCCTGTGGCCGGATGGACCTATGTCGAAAGGTGTTTGATGAAATGCCTCAGAGAGATGTTGTGTCGTGGACCGGTTTGATTAAGGGGTACCGGAACTTGGGGAAGTATGACGATGCGTTGATTGCTTTCGAGCAGATGCAGTATGCGGGTGTGGTGCCGAATGCTGTGACGATGGTGAATGCTTTGGCTGCGTGTGCAAGTTTCGGGGCGCTTGAGATGGGGGTGTGGATTCATGAATGCATAAGGAGGGAGGGATGGGAGTTGGATGTGAAATTGGGAACAGCGTTGATTGATTTGTATGGAACATGTGGGAAAACTGAGGAGGCTTTGGCTGTTTTCGATACGATGGAAGAGAAGAACACATTTACTTGGAATGCACTGATCAAGGGGTTTGCTCTTGCCAAGAGCGGCGAGGAGGCAGTTTGGTGGTTTGGGAGAATGGAACAAGAAGGGTTCGGTGCAGACGAAGTGACTTTGGTGGAACTGCTTTCTGCTTGTAGTCACTCGGGGTTGGTAGATGTTGGTAGACAAATTTTTAGTTCCTTGAGCAATGGCAAGTATGGATTTTTGCCGAGCGTCAAGCATTATGCTTGTATGATTGACCTCTTGGCTCGTGCCGGGTGTCTTGAAGATGCTTTCAAATGCTTAAGAGAGATGCCTTATGAGCCTAGTAAAGCTATGATGGGGTCATTGCTGGCTGCCGGTAAAACTTATGGGGACTTGGAGTTGAGCGAGTTTGCAGCTACAAAGCTTGTTGAACTGGAGCCGGGGAATAGTGCTTACTATATCTTGCTGTCGAATTTGTATGCCGAGATGGGTAGATGGGATGATGTTGAGAAAGTGAGGGCCATGATGAAAGAGAGAGACCTTAAGAAAGACTTGGGTTGTAGCTCGGCGGAATGCAAACCCTTTGACCAAGTTGATCAACTAGTAGCGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00630 ko00910 ko01200 map00460 map00630 map00910 map01200
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

466

Amino Acids

51.94

Weight (kDa)

6.1

Isoelectric Point (pI)

36.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 70 - 118 8.3e-07 PPR repeat family
PPR_2 PF13041 171 - 217 1e-07 PPR repeat family
PPR PF01535 275 - 305 4.8e-06 PPR repeat
E_motif PF20431 391 - 451 7.8e-22 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015846)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43790
fragaria_vesca FvH4_2g25230
malus_domestica MD03G1282600.v1.1 MD11G1303700.v1.1
prunus_persica Prupe.8G257000_v2.0.a1
pyrus_communis pycom11g26530
rosa_chinensis RchiOBHm_Chr6g0293351
rosa_laevigata RLG00000011953
rosa_multiflora Rmu_sc0006269.1_g000030
rosa_roxburghii Rroxscaffold_7G00174230
rosa_rugosa Rorug06G0234800
rosa_samantha Rh6AG347700 Rh6BG355300 Rh6DG348500
rosa_wichuraiana Rw6G030250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 230
Acc16I TGCGCA 1 cut(s) 296
Acc36I ACCTGC 1 cut(s) 230
Acc65I GGTACC 1 cut(s) 546
AccB1I GGYRCC 2 cut(s) 546, 613
AccBSI CCGCTC 1 cut(s) 867
AccI GTMKAC 2 cut(s) 282, 985
AciI CCGC 4 cut(s) 144, 605, 867, 1355
AcoI YGGCCR 2 cut(s) 358, 466
AcsI RAATTY 2 cut(s) 990, 1258
AfaI GTAC 2 cut(s) 455, 548
AfiI CCNNNNNNNGG 5 cut(s) 172, 360, 439, 468, 556
AflII CTTAAG 2 cut(s) 1105, 1328
AflIII ACRYGT 1 cut(s) 764
AgeI ACCGGT 1 cut(s) 530
AgsI TTSAA 5 cut(s) 13, 343, 1088, 1099, 1217
AhlI ACTAGT 1 cut(s) 1387
AjiI CACGTC 1 cut(s) 268
AluBI AGCT 6 cut(s) 91, 199, 1136, 1202, 1210, 1350
AluI AGCT 6 cut(s) 91, 199, 1136, 1202, 1210, 1350
Alw26I GTCTC 2 cut(s) 22, 1317
Ama87I CYCGRG 1 cut(s) 964
AoxI GGCC 6 cut(s) 160, 174, 358, 376, 466, 1305
ApeKI GCWGC 3 cut(s) 647, 1157, 1199
ApoI RAATTY 2 cut(s) 990, 1258
AsiGI ACCGGT 1 cut(s) 530
Asp718I GGTACC 1 cut(s) 546
AspLEI GCGC 3 cut(s) 297, 670, 1396
AspS9I GGNCC 5 cut(s) 175, 364, 475, 528, 1305
AsuC2I CCSGG 3 cut(s) 362, 1078, 1227
AsuHPI GGTGA 5 cut(s) 88, 133, 184, 211, 646
AvaI CYCGRG 1 cut(s) 964
AvaII GGWCC 3 cut(s) 364, 475, 528
BanI GGYRCC 2 cut(s) 546, 613
BauI CACGAG 2 cut(s) 25, 1071
BbsI GAAGAC 1 cut(s) 208
BbvI GCAGC 3 cut(s) 634, 1144, 1211
BceAI ACGGC 1 cut(s) 373
BclI TGATCA 2 cut(s) 840, 1381
BcnI CCSGG 3 cut(s) 362, 1078, 1227
BcoDI GTCTC 2 cut(s) 22, 1317
BcuI ACTAGT 1 cut(s) 1387
BfaI CTAG 2 cut(s) 1128, 1388
BfoI RGCGCY 1 cut(s) 671
BfrI CTTAAG 2 cut(s) 1105, 1328
BfuAI ACCTGC 1 cut(s) 230
BisI GCNGC 4 cut(s) 648, 868, 1158, 1200
BlsI GCNGC 4 cut(s) 649, 869, 1159, 1201
Bme1390I CCNGG 3 cut(s) 362, 1078, 1227
Bme18I GGWCC 3 cut(s) 364, 475, 528
BmeT110I CYCGRG 1 cut(s) 964
BmgBI CACGTC 1 cut(s) 268
BmgT120I GGNCC 5 cut(s) 175, 364, 475, 528, 1305
BmiI GGNNCC 4 cut(s) 365, 548, 615, 1224
BmrFI CCNGG 3 cut(s) 362, 1078, 1227
BmsI GCATC 5 cut(s) 371, 562, 585, 1081, 1104
BoxI GACNNNNGTC 1 cut(s) 480
BpiI GAAGAC 1 cut(s) 208
BpmI CTGGAG 1 cut(s) 1241
BpuEI CTTGAG 2 cut(s) 692, 1024
BpuMI CCSGG 3 cut(s) 362, 1078, 1227
BsaI GGTCTC 1 cut(s) 1317
BsaJI CCNNGG 2 cut(s) 157, 1226
BsaWI WCCGGW 2 cut(s) 530, 549
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 5 cut(s) 172, 360, 439, 468, 556
Bse118I RCCGGY 2 cut(s) 530, 1160
Bse1I ACTGG 1 cut(s) 1224
Bse3DI GCAATG 2 cut(s) 1015, 1148
BseDI CCNNGG 2 cut(s) 157, 1226
BseGI GGATG 6 cut(s) 69, 258, 477, 719, 730, 1291
BseLI CCNNNNNNNGG 5 cut(s) 172, 360, 439, 468, 556
BseMI GCAATG 2 cut(s) 1015, 1148
BseMII CTCAG 3 cut(s) 382, 521, 768
BseNI ACTGG 1 cut(s) 1224
BseRI GAGGAG 5 cut(s) 23, 46, 155, 794, 887
BseX3I CGGCCG 1 cut(s) 358
BseXI GCAGC 3 cut(s) 634, 1144, 1211
BseYI CCCAGC 2 cut(s) 87, 195
BsgI GTGCAG 1 cut(s) 939
Bsh1285I CGRYCG 1 cut(s) 361
BshFI GGCC 6 cut(s) 162, 176, 360, 378, 468, 1307
BshNI GGYRCC 2 cut(s) 546, 613
BshTI ACCGGT 1 cut(s) 530
BsiEI CGRYCG 1 cut(s) 361
BsiHKCI CYCGRG 1 cut(s) 964
BsiSI CCGG 7 cut(s) 361, 469, 531, 550, 1077, 1161, 1226
BslFI GGGAC 3 cut(s) 254, 377, 1190
BslI CCNNNNNNNGG 5 cut(s) 172, 360, 439, 468, 556
BsmAI GTCTC 2 cut(s) 22, 1317
BsmFI GGGAC 3 cut(s) 254, 377, 1190
BsmI GAATGC 5 cut(s) 625, 643, 701, 838, 1364
BsnI GGCC 6 cut(s) 162, 176, 360, 378, 468, 1307
Bso31I GGTCTC 1 cut(s) 1317
BsoBI CYCGRG 1 cut(s) 964
Bsp143I GATC 2 cut(s) 840, 1381
BspACI CCGC 4 cut(s) 144, 605, 867, 1355
BspANI GGCC 6 cut(s) 162, 176, 360, 378, 468, 1307
BspCNI CTCAG 3 cut(s) 381, 520, 769
BspHI TCATGA 1 cut(s) 691
BspLI GGNNCC 4 cut(s) 365, 548, 615, 1224
BspMI ACCTGC 1 cut(s) 230
BspT107I GGYRCC 2 cut(s) 546, 613
BspTI CTTAAG 2 cut(s) 1105, 1328
BspTNI GGTCTC 1 cut(s) 1317
BsrBI CCGCTC 1 cut(s) 867
BsrDI GCAATG 2 cut(s) 1015, 1148
BsrFI RCCGGY 2 cut(s) 530, 1160
BsrI ACTGG 1 cut(s) 1224
BssAI RCCGGY 2 cut(s) 530, 1160
BssECI CCNNGG 2 cut(s) 157, 1226
BssMI GATC 2 cut(s) 840, 1381
BssNAI GTATAC 1 cut(s) 283
BssSI CACGAG 2 cut(s) 25, 1071
Bst1107I GTATAC 1 cut(s) 283
Bst2BI CACGAG 2 cut(s) 25, 1071
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 804
BstAFI CTTAAG 2 cut(s) 1105, 1328
BstC8I GCNNGC 2 cut(s) 386, 1155
BstDEI CTNAG 3 cut(s) 368, 507, 777
BstF5I GGATG 6 cut(s) 69, 258, 477, 719, 730, 1291
BstH2I RGCGCY 1 cut(s) 671
BstHHI GCGC 3 cut(s) 297, 670, 1396
BstKTI GATC 2 cut(s) 843, 1384
BstMAI GTCTC 2 cut(s) 22, 1317
BstMBI GATC 2 cut(s) 840, 1381
BstMCI CGRYCG 1 cut(s) 361
BstMWI GCNNNNNNNGC 4 cut(s) 581, 647, 653, 1123
BstNSI RCATGY 2 cut(s) 295, 768
BstPAI GACNNNNGTC 1 cut(s) 480
BstSCI CCNGG 3 cut(s) 360, 1076, 1225
BstV1I GCAGC 3 cut(s) 634, 1144, 1211
BstV2I GAAGAC 1 cut(s) 208
BstZ17I GTATAC 1 cut(s) 283
BstZI CGGCCG 1 cut(s) 358
BsuRI GGCC 6 cut(s) 162, 176, 360, 378, 468, 1307
BtrI CACGTC 1 cut(s) 268
BtsCI GGATG 6 cut(s) 69, 258, 477, 719, 730, 1291
BtsIMutI CAGTG 2 cut(s) 419, 836
BveI ACCTGC 1 cut(s) 230
Cac8I GCNNGC 2 cut(s) 386, 1155
CciI TCATGA 1 cut(s) 691
CfoI GCGC 3 cut(s) 297, 670, 1396
Cfr10I RCCGGY 2 cut(s) 530, 1160
Cfr13I GGNCC 5 cut(s) 175, 364, 475, 528, 1305
CseI GACGC 1 cut(s) 1024
Csp6I GTAC 2 cut(s) 454, 547
CspAI ACCGGT 1 cut(s) 530
CviAII CATG 6 cut(s) 212, 292, 395, 692, 765, 1309
CviQI GTAC 2 cut(s) 454, 547
DdeI CTNAG 3 cut(s) 368, 507, 777
DpnI GATC 2 cut(s) 842, 1383
DpnII GATC 2 cut(s) 840, 1381
EaeI YGGCCR 2 cut(s) 358, 466
EagI CGGCCG 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 804
EarI CTCTTC 1 cut(s) 804
EciI GGCGGA 1 cut(s) 1370
EclXI CGGCCG 1 cut(s) 358
Eco31I GGTCTC 1 cut(s) 1317
Eco32I GATATC 1 cut(s) 424
Eco47I GGWCC 3 cut(s) 364, 475, 528
Eco52I CGGCCG 1 cut(s) 358
Eco88I CYCGRG 1 cut(s) 964
EcoO109I RGGNCCY 1 cut(s) 364
EcoRV GATATC 1 cut(s) 424
EcoT22I ATGCAT 1 cut(s) 701
FaeI CATG 6 cut(s) 215, 295, 398, 695, 768, 1312
FalI AAGNNNNNCTT 2 cut(s) 1322, 1354
FaqI GGGAC 3 cut(s) 254, 377, 1190
FatI CATG 6 cut(s) 211, 291, 394, 691, 764, 1308
FauI CCCGC 1 cut(s) 598
FbaI TGATCA 2 cut(s) 840, 1381
FblI GTMKAC 2 cut(s) 282, 985
Fnu4HI GCNGC 4 cut(s) 648, 868, 1158, 1200
FokI GGATG 6 cut(s) 56, 245, 484, 726, 737, 1298
Fsp4HI GCNGC 4 cut(s) 648, 868, 1158, 1200
FspBI CTAG 2 cut(s) 1128, 1388
FspI TGCGCA 1 cut(s) 296
GlaI GCGC 3 cut(s) 296, 669, 1395
GluI GCNGC 4 cut(s) 648, 868, 1158, 1200
GsaI CCCAGC 2 cut(s) 91, 199
GsuI CTGGAG 1 cut(s) 1241
HaeII RGCGCY 1 cut(s) 671
HaeIII GGCC 6 cut(s) 162, 176, 360, 378, 468, 1307
HapII CCGG 7 cut(s) 361, 469, 531, 550, 1077, 1161, 1226
HgaI GACGC 1 cut(s) 1024
HhaI GCGC 3 cut(s) 297, 670, 1396
Hin1II CATG 6 cut(s) 215, 295, 398, 695, 768, 1312
Hin6I GCGC 3 cut(s) 295, 668, 1394
HinP1I GCGC 3 cut(s) 295, 668, 1394
HindIII AAGCTT 1 cut(s) 1208
HinfI GANTC 2 cut(s) 30, 688
HpaII CCGG 7 cut(s) 361, 469, 531, 550, 1077, 1161, 1226
HphI GGTGA 5 cut(s) 88, 133, 184, 211, 646
Hpy166II GTNNAC 3 cut(s) 283, 528, 986
Hpy188I TCNGA 4 cut(s) 239, 355, 371, 510
Hpy188III TCNNGA 4 cut(s) 433, 446, 692, 1085
Hpy8I GTNNAC 3 cut(s) 283, 528, 986
Hpy99I CGWCG 2 cut(s) 128, 359
HpyAV CCTTC 4 cut(s) 145, 191, 253, 902
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4IV ACGT 3 cut(s) 15, 267, 429
HpyCH4V TGCA 9 cut(s) 225, 388, 598, 656, 699, 836, 920, 1199, 1362
HpyF10VI GCNNNNNNNGC 4 cut(s) 581, 647, 653, 1123
HpyF3I CTNAG 3 cut(s) 368, 507, 777
HpySE526I ACGT 3 cut(s) 15, 267, 429
Hsp92II CATG 6 cut(s) 215, 295, 398, 695, 768, 1312
HspAI GCGC 3 cut(s) 295, 668, 1394
KpnI GGTACC 1 cut(s) 550
Ksp22I TGATCA 2 cut(s) 840, 1381
Kzo9I GATC 2 cut(s) 840, 1381
LmnI GCTCC 3 cut(s) 59, 204, 1222
Lsp1109I GCAGC 3 cut(s) 634, 1144, 1211
LweI GCATC 5 cut(s) 371, 562, 585, 1081, 1104
MaeI CTAG 2 cut(s) 1128, 1388
MaeII ACGT 3 cut(s) 15, 267, 429
MaeIII GTNAC 4 cut(s) 16, 625, 928, 959
MalI GATC 2 cut(s) 842, 1383
MbiI CCGCTC 1 cut(s) 867
MboI GATC 2 cut(s) 840, 1381
MboII GAAGA 4 cut(s) 208, 821, 826, 1100
MluCI AATT 4 cut(s) 404, 731, 990, 1258
MlyI GAGTC 1 cut(s) 24
MmeI TCCRAC 2 cut(s) 378, 702
Mph1103I ATGCAT 1 cut(s) 701
MseI TTAA 3 cut(s) 540, 1106, 1329
MslI CAYNNNNRTG 2 cut(s) 290, 393
MspCI CTTAAG 2 cut(s) 1105, 1328
MspI CCGG 7 cut(s) 361, 469, 531, 550, 1077, 1161, 1226
MspR9I CCNGG 3 cut(s) 362, 1078, 1227
Mva1269I GAATGC 5 cut(s) 625, 643, 701, 838, 1364
MwoI GCNNNNNNNGC 4 cut(s) 581, 647, 653, 1123
NciI CCSGG 3 cut(s) 362, 1078, 1227
NdeII GATC 2 cut(s) 840, 1381
NlaIII CATG 6 cut(s) 215, 295, 398, 695, 768, 1312
NlaIV GGNNCC 4 cut(s) 365, 548, 615, 1224
NmeAIII GCCGAG 5 cut(s) 138, 419, 1056, 1294, 1331
NmuCI GTSAC 4 cut(s) 16, 625, 928, 959
NsbI TGCGCA 1 cut(s) 296
NsiI ATGCAT 1 cut(s) 701
NspI RCATGY 2 cut(s) 295, 768
PagI TCATGA 1 cut(s) 691
PaqCI CACCTGC 1 cut(s) 230
PciI ACATGT 1 cut(s) 764
PcsI WCGNNNNNNNCGW 1 cut(s) 921
PctI GAATGC 5 cut(s) 625, 643, 701, 838, 1364
PfeI GAWTC 1 cut(s) 688
PinAI ACCGGT 1 cut(s) 530
PkrI GCNGC 4 cut(s) 649, 869, 1159, 1201
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
PpuMI RGGWCCY 1 cut(s) 364
PscI ACATGT 1 cut(s) 764
PshAI GACNNNNGTC 1 cut(s) 480
Psp5II RGGWCCY 1 cut(s) 364
PspFI CCCAGC 2 cut(s) 87, 195
PspN4I GGNNCC 4 cut(s) 365, 548, 615, 1224
PspPI GGNCC 5 cut(s) 175, 364, 475, 528, 1305
PspPPI RGGWCCY 1 cut(s) 364
RsaI GTAC 2 cut(s) 455, 548
RsaNI GTAC 2 cut(s) 454, 547
RseI CAYNNNNRTG 2 cut(s) 290, 393
SaqAI TTAA 3 cut(s) 540, 1106, 1329
SatI GCNGC 4 cut(s) 648, 868, 1158, 1200
Sau3AI GATC 2 cut(s) 840, 1381
Sau96I GGNCC 5 cut(s) 175, 364, 475, 528, 1305
SchI GAGTC 1 cut(s) 24
ScrFI CCNGG 3 cut(s) 362, 1078, 1227
SfaNI GCATC 5 cut(s) 371, 562, 585, 1081, 1104
SinI GGWCC 3 cut(s) 364, 475, 528
SmiMI CAYNNNNRTG 2 cut(s) 290, 393
SmlI CTYRAG 4 cut(s) 671, 1003, 1105, 1328
SmoI CTYRAG 4 cut(s) 671, 1003, 1105, 1328
SpeI ACTAGT 1 cut(s) 1387
Sse9I AATT 4 cut(s) 404, 731, 990, 1258
SsiI CCGC 4 cut(s) 144, 605, 867, 1355
SspMI CTAG 2 cut(s) 1128, 1388
StyD4I CCNGG 3 cut(s) 360, 1076, 1225
TaaI ACNGT 1 cut(s) 124
TaiI ACGT 3 cut(s) 18, 270, 432
TaqI TCGA 4 cut(s) 484, 588, 798, 1256
TasI AATT 4 cut(s) 404, 731, 990, 1258
TauI GCSGC 1 cut(s) 870
TfiI GAWTC 1 cut(s) 688
Tru1I TTAA 3 cut(s) 540, 1106, 1329
Tru9I TTAA 3 cut(s) 540, 1106, 1329
TscAI CASTG 2 cut(s) 419, 843
TseFI GTSAC 4 cut(s) 16, 625, 928, 959
TseI GCWGC 3 cut(s) 647, 1157, 1199
Tsp45I GTSAC 4 cut(s) 16, 625, 928, 959
TspDTI ATGAA 5 cut(s) 127, 513, 680, 708, 1328
TspRI CASTG 2 cut(s) 419, 843
Vha464I CTTAAG 2 cut(s) 1105, 1328
VpaK11BI GGWCC 3 cut(s) 364, 475, 528
XapI RAATTY 2 cut(s) 990, 1258
XceI RCATGY 2 cut(s) 295, 768
XmiI GTMKAC 2 cut(s) 282, 985
XspI CTAG 2 cut(s) 1128, 1388
Zsp2I ATGCAT 1 cut(s) 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.