MD04G1001600.v1.1

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0015256
Physical Location & Seq
Forward (+)
216400 .. 217308
909 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1001600.v1.1.491

Sequence Viewer

Length: 909 bp
ATGTATTGCAAATGTGGGAAAGCTTTGCGTTCTGCCAAGTTAATTTTCGAGAGGGAAGCTGTTAAAGATGTTGTGATATGGAGCTCGATTATTGGGAGCTATTCTCAATGCGGGGATTACACGAAATCTCTGAAACTCTTCAGCCAAATGCGAGCTGAAGGAATTGAACCCAACTCTGTAACTGTATTGGCGATCATTTCTGTCTGCGCTTCCCTGTCTTCACTAATCCTTGGCTGTGGAGTCCATGGCTATGTCTTAAAATCTGGGTTAAGTTTTGACATTTTCATTGGGAATGCACTCATCAATATGTATGCAAAGTGTGGTTGTCTCAAGGATTCACATCAGGTTTTCAAGGAGATGCCGAGCAAAGATTCTGTTTCATGGAGCGCACTGATTGGCAGTTATGGCCTTCATGGGGATTCCGAGAAAGCTCTGCAACTCTTTGGTGAGATGCAAGAGAGAGGGGTAGAGCCTGATGCAGTTACTTTCCTCTCTGTTTTATCTGCTTGCACCCATGCCGGCCTAGTGGAAGAAGGAAGTAAGATCTTTAAGCGTCTGACAGAAGGTAATAAAATAGAATTAAGCACGGAGCACTACGCTTGCTTTATCGATCTTCTTGGAAGGACGGGCAAGCTTGAAGATGCTTATGAGCTAGTGAGATCAATGCCCATGACACCAAGTACTAGAATTTGGACTTCTTTGGTTACAGCTTGCAAGATTCATGGAAAATTAGACAAGGCAGAATTTTTAGCACATGAGCTTGTTACCTTGGAGCCTGAGAATGCTGCCCACTATACCTTACTGAGCACGGTTCATGCTGAAACCGGAAACTGGCTTGGCGTGGAAGAGGCAAGGAGAGCCATGAGAATACAAGGATTAAGGAAAGGCTACGGATTCAGCCGAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 RVT_2 Retrotran_gag_2 gag_pre-integrs rve zf-CCHC

Protein Analysis

303

Amino Acids

33.21

Weight (kDa)

7.09

Isoelectric Point (pI)

38.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 22 - 70 2.2e-10 PPR repeat family
PPR PF01535 25 - 55 4.7e-06 PPR repeat
PPR_2 PF13041 123 - 171 2.7e-12 PPR repeat family
PPR PF01535 126 - 156 1.1e-08 PPR repeat
E_motif PF20431 242 - 302 1.2e-09 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015256)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31070 AT4G31070
fragaria_vesca FvH4_4g00140
malus_domestica MD04G1001600.v1.1
prunus_persica Prupe.1G001600_v2.0.a1
pyrus_communis pycom04g00220
rosa_chinensis RchiOBHm_Chr4g0384761
rosa_laevigata RLG00000010274
rosa_roxburghii Rroxscaffold_5G00332820
rosa_rugosa Rorug03G0297500
rosa_samantha Rh4AG001000 Rh4BG000900 Rh4CG000800 Rh4DG000900
rosa_wichuraiana Rw0G021980 Rw4G000790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 111
AcsI RAATTY 3 cut(s) 687, 743, 903
AcuI CTGAAG 2 cut(s) 124, 177
AfaI GTAC 1 cut(s) 682
AfiI CCNNNNNNNGG 2 cut(s) 415, 831
AgsI TTSAA 3 cut(s) 167, 352, 638
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
Alw21I GWGCWC 3 cut(s) 86, 594, 809
Alw26I GTCTC 1 cut(s) 332
AoxI GGCC 2 cut(s) 406, 520
ApeKI GCWGC 1 cut(s) 785
ApoI RAATTY 3 cut(s) 687, 743, 903
Asp700I GAANNNNTTC 1 cut(s) 137
AspLEI GCGC 2 cut(s) 209, 389
AsuHPI GGTGA 1 cut(s) 458
BanII GRGCYC 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 3 cut(s) 86, 594, 809
BbvI GCAGC 1 cut(s) 772
BcoDI GTCTC 1 cut(s) 332
BfaI CTAG 3 cut(s) 524, 653, 684
BglII AGATCT 1 cut(s) 543
BisI GCNGC 1 cut(s) 786
BlsI GCNGC 1 cut(s) 787
BmcAI AGTACT 1 cut(s) 682
BmiI GGNNCC 1 cut(s) 774
BmsI GCATC 4 cut(s) 348, 441, 466, 631
BpiI GAAGAC 1 cut(s) 210
BplI GAGNNNNNCTC 2 cut(s) 88, 120
BpuEI CTTGAG 1 cut(s) 314
Bsa29I ATCGAT 1 cut(s) 609
BsaBI GATNNNNATC 1 cut(s) 339
BsaJI CCNNGG 3 cut(s) 229, 244, 768
BsaWI WCCGGW 1 cut(s) 824
Bsc4I CCNNNNNNNGG 2 cut(s) 415, 831
Bse118I RCCGGY 1 cut(s) 518
Bse1I ACTGG 1 cut(s) 836
Bse8I GATNNNNATC 1 cut(s) 339
BseCI ATCGAT 1 cut(s) 609
BseDI CCNNGG 3 cut(s) 229, 244, 768
BseJI GATNNNNATC 1 cut(s) 339
BseLI CCNNNNNNNGG 2 cut(s) 415, 831
BseMII CTCAG 2 cut(s) 768, 794
BseNI ACTGG 1 cut(s) 836
BseXI GCAGC 1 cut(s) 772
BshFI GGCC 2 cut(s) 408, 522
BshVI ATCGAT 1 cut(s) 609
BsiHKAI GWGCWC 3 cut(s) 86, 594, 809
BsiSI CCGG 2 cut(s) 519, 825
BslI CCNNNNNNNGG 2 cut(s) 415, 831
BsmAI GTCTC 1 cut(s) 332
BsmI GAATGC 2 cut(s) 298, 787
BsnI GGCC 2 cut(s) 408, 522
Bsp1286I GDGCHC 3 cut(s) 86, 594, 809
Bsp143I GATC 4 cut(s) 192, 543, 610, 659
Bsp19I CCATGG 1 cut(s) 244
BspACI CCGC 1 cut(s) 111
BspANI GGCC 2 cut(s) 408, 522
BspCNI CTCAG 2 cut(s) 769, 795
BspDI ATCGAT 1 cut(s) 609
BspLI GGNNCC 1 cut(s) 774
BsrFI RCCGGY 1 cut(s) 518
BsrI ACTGG 1 cut(s) 836
BssAI RCCGGY 1 cut(s) 518
BssECI CCNNGG 3 cut(s) 229, 244, 768
BssMI GATC 4 cut(s) 192, 543, 610, 659
BssT1I CCWWGG 3 cut(s) 229, 244, 768
Bst4CI ACNGT 2 cut(s) 184, 811
Bst6I CTCTTC 2 cut(s) 143, 840
BstC8I GCNNGC 6 cut(s) 153, 508, 520, 601, 632, 712
BstDEI CTNAG 2 cut(s) 777, 803
BstDSI CCRYGG 1 cut(s) 244
BstHHI GCGC 2 cut(s) 209, 389
BstKTI GATC 4 cut(s) 195, 546, 613, 662
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 4 cut(s) 192, 543, 610, 659
BstMWI GCNNNNNNNGC 2 cut(s) 405, 857
BstV1I GCAGC 1 cut(s) 772
BstV2I GAAGAC 1 cut(s) 210
BstX2I RGATCY 1 cut(s) 543
BstYI RGATCY 1 cut(s) 543
Bsu15I ATCGAT 1 cut(s) 609
BsuRI GGCC 2 cut(s) 408, 522
BsuTUI ATCGAT 1 cut(s) 609
BtgI CCRYGG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 389
Cac8I GCNNGC 6 cut(s) 153, 508, 520, 601, 632, 712
CfoI GCGC 2 cut(s) 209, 389
Cfr10I RCCGGY 1 cut(s) 518
ClaI ATCGAT 1 cut(s) 609
CseI GACGC 1 cut(s) 542
Csp6I GTAC 1 cut(s) 681
CviAII CATG 9 cut(s) 245, 381, 413, 515, 670, 722, 755, 815, 862
CviQI GTAC 1 cut(s) 681
DdeI CTNAG 2 cut(s) 777, 803
DpnI GATC 4 cut(s) 194, 545, 612, 661
DpnII GATC 4 cut(s) 192, 543, 610, 659
Eam1104I CTCTTC 2 cut(s) 143, 840
EarI CTCTTC 2 cut(s) 143, 840
Ecl136II GAGCTC 1 cut(s) 84
Eco130I CCWWGG 3 cut(s) 229, 244, 768
Eco24I GRGCYC 1 cut(s) 86
Eco53kI GAGCTC 1 cut(s) 84
Eco57I CTGAAG 2 cut(s) 124, 177
EcoICRI GAGCTC 1 cut(s) 84
EcoT14I CCWWGG 3 cut(s) 229, 244, 768
EcoT38I GRGCYC 1 cut(s) 86
ErhI CCWWGG 3 cut(s) 229, 244, 768
FaeI CATG 9 cut(s) 248, 384, 416, 518, 673, 725, 758, 818, 865
FatI CATG 9 cut(s) 244, 380, 412, 514, 669, 721, 754, 814, 861
FauI CCCGC 1 cut(s) 104
Fnu4HI GCNGC 1 cut(s) 786
FriOI GRGCYC 1 cut(s) 86
Fsp4HI GCNGC 1 cut(s) 786
FspBI CTAG 3 cut(s) 524, 653, 684
GlaI GCGC 2 cut(s) 208, 388
GluI GCNGC 1 cut(s) 786
HaeIII GGCC 2 cut(s) 408, 522
HapII CCGG 2 cut(s) 519, 825
HgaI GACGC 1 cut(s) 542
HhaI GCGC 2 cut(s) 209, 389
Hin1II CATG 9 cut(s) 248, 384, 416, 518, 673, 725, 758, 818, 865
Hin6I GCGC 2 cut(s) 207, 387
HinP1I GCGC 2 cut(s) 207, 387
HindIII AAGCTT 2 cut(s) 21, 632
HinfI GANTC 6 cut(s) 240, 335, 371, 419, 718, 894
HpaII CCGG 2 cut(s) 519, 825
HphI GGTGA 1 cut(s) 458
Hpy188I TCNGA 3 cut(s) 132, 424, 558
Hpy188III TCNNGA 1 cut(s) 49
HpyAV CCTTC 5 cut(s) 152, 419, 527, 557, 615
HpyCH4III ACNGT 2 cut(s) 184, 811
HpyCH4V TGCA 8 cut(s) 9, 296, 314, 436, 454, 479, 510, 714
HpyF10VI GCNNNNNNNGC 2 cut(s) 405, 857
HpyF3I CTNAG 2 cut(s) 777, 803
Hsp92II CATG 9 cut(s) 248, 384, 416, 518, 673, 725, 758, 818, 865
HspAI GCGC 2 cut(s) 207, 387
KroI GCCGGC 1 cut(s) 518
KroNI GCCGGC 1 cut(s) 520
Kzo9I GATC 4 cut(s) 192, 543, 610, 659
LmnI GCTCC 5 cut(s) 81, 96, 384, 589, 772
LpnPI CCDG 8 cut(s) 227, 249, 329, 486, 532, 789, 817, 838
Lsp1109I GCAGC 1 cut(s) 772
LweI GCATC 4 cut(s) 348, 441, 466, 631
MaeI CTAG 3 cut(s) 524, 653, 684
MaeIII GTNAC 4 cut(s) 178, 481, 703, 763
MalI GATC 4 cut(s) 194, 545, 612, 661
MboI GATC 4 cut(s) 192, 543, 610, 659
MboII GAAGA 6 cut(s) 130, 210, 542, 605, 650, 857
MflI RGATCY 1 cut(s) 543
MhlI GDGCHC 3 cut(s) 86, 594, 809
MluCI AATT 7 cut(s) 42, 162, 578, 687, 728, 743, 903
MlyI GAGTC 1 cut(s) 249
MnlI CCTC 4 cut(s) 45, 455, 500, 841
MroNI GCCGGC 1 cut(s) 518
MroXI GAANNNNTTC 1 cut(s) 137
MseI TTAA 7 cut(s) 41, 63, 257, 269, 549, 581, 878
MslI CAYNNNNRTG 2 cut(s) 249, 305
MspI CCGG 2 cut(s) 519, 825
Mva1269I GAATGC 2 cut(s) 298, 787
MwoI GCNNNNNNNGC 2 cut(s) 405, 857
NaeI GCCGGC 1 cut(s) 520
NcoI CCATGG 1 cut(s) 244
NdeII GATC 4 cut(s) 192, 543, 610, 659
NgoMIV GCCGGC 1 cut(s) 518
NlaIII CATG 9 cut(s) 248, 384, 416, 518, 673, 725, 758, 818, 865
NlaIV GGNNCC 1 cut(s) 774
NmeAIII GCCGAG 1 cut(s) 387
PctI GAATGC 2 cut(s) 298, 787
PdiI GCCGGC 1 cut(s) 520
PdmI GAANNNNTTC 1 cut(s) 137
PfeI GAWTC 5 cut(s) 335, 371, 419, 718, 894
PkrI GCNGC 1 cut(s) 787
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
Psp124BI GAGCTC 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 774
PsuI RGATCY 1 cut(s) 543
RsaI GTAC 1 cut(s) 682
RsaNI GTAC 1 cut(s) 681
RseI CAYNNNNRTG 2 cut(s) 249, 305
SacI GAGCTC 1 cut(s) 86
SaqAI TTAA 7 cut(s) 41, 63, 257, 269, 549, 581, 878
SatI GCNGC 1 cut(s) 786
Sau3AI GATC 4 cut(s) 192, 543, 610, 659
ScaI AGTACT 1 cut(s) 682
SchI GAGTC 1 cut(s) 249
SduI GDGCHC 3 cut(s) 86, 594, 809
SfaNI GCATC 4 cut(s) 348, 441, 466, 631
SmiMI CAYNNNNRTG 2 cut(s) 249, 305
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 7 cut(s) 42, 162, 578, 687, 728, 743, 903
SsiI CCGC 1 cut(s) 111
SspMI CTAG 3 cut(s) 524, 653, 684
SstI GAGCTC 1 cut(s) 86
StyI CCWWGG 3 cut(s) 229, 244, 768
TaaI ACNGT 2 cut(s) 184, 811
TaqI TCGA 3 cut(s) 48, 86, 609
TasI AATT 7 cut(s) 42, 162, 578, 687, 728, 743, 903
TatI WGTACW 1 cut(s) 680
TfiI GAWTC 5 cut(s) 335, 371, 419, 718, 894
Tru1I TTAA 7 cut(s) 41, 63, 257, 269, 549, 581, 878
Tru9I TTAA 7 cut(s) 41, 63, 257, 269, 549, 581, 878
TscAI CASTG 1 cut(s) 396
TseI GCWGC 1 cut(s) 785
TspDTI ATGAA 5 cut(s) 274, 369, 401, 710, 803
TspGWI ACGGA 2 cut(s) 602, 906
TspRI CASTG 1 cut(s) 396
XapI RAATTY 3 cut(s) 687, 743, 903
XmnI GAANNNNTTC 1 cut(s) 137
XspI CTAG 3 cut(s) 524, 653, 684
ZrmI AGTACT 1 cut(s) 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.