MD04G1094800.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0017068
Physical Location & Seq
Forward (+)
17376044 .. 17377801
1758 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1094800.v1.1.491

Sequence Viewer

Length: 1758 bp
ATGTCTTCTCATAAAGCCTTCAAAACGTTGAAGAAAGTCTTCCCCGCAGAGCCCACGTTCATATCGAACCAAGAAACCGCCGAGAAGATTGTCAAAACCCTAATCAAATCAGGCATTCAACCCCTCAAATCAACATCATCATCTTTGCTCTCCAGTCTCAATCCCCACATAACAAACCTAGTCCTCTCAAACCCACTCGTCCTACCACATTCTTGCGTAAAATTATTCAACTTTCTCCAGAAAAATCCATCCCACAAACACAATCTTAAATCCCACGTTACCCTCCTTTGCAGACTTTATCAAGCTAGAAAATTTGCCCAGATGAAGATTGTACTGAATGTTATTGTCACGAATGATAATCTTCGATGCCCGGTTTCCGAAATTGCGTCTCTGATTGAGGAGGGGCCTAATGGGATGAAATTTGCTGGGACATTGTGCGATATGCTGTTCCGGGTTTATGCAGAAAACAAAATGGTTGAGGAGGCTATTGGGGTTTTTGATTATGTGGGCAGGAATGGGATTGAGATTGGAGAAAGGTCCTGCATTGTGCTTTTGCTTGCATTGAGGAAATGTGGTCGGGTGGATTCATGTTGGAGGTTCTTCGATCGAATGGTCAAAAACGGTGTTCGAATCACGGTTCTTACATATAACACAATTTTGAAAGCATACATTGGAAGGAAGGATTTTGAGGGCGTTAGTGAGGTTCTGAGGTTGATGGAGAAGGATGGTGTGGGTTATAATGTGGTGACATCCACGCTTTTGATTGATTTGTTTGGTAGTTCTGAGAGGATTGAGGGTGCTCAAAAGGTGTTTGAGGAAATGCCTGAGAGAGGGATAGAACCAGATTTGTATGTTTATACCTCGATTATTAATTGCTATTGTAAAGCGGGAAATATGGAGAGGGCGTTGTTTCTGCTCAGTGAATGTAATCAAAGGGGGTTTGCACCAAATGAGCATACTTACGGGGTATTGATTAATGGTGCGTGCAAGGCAGGGCAGATGGAGATGGCGGACATCTTGGTGAATGAGATGCAGAGTAAAGGCATTGACGTAAACCAAGTGGTGTTTCATACACTAATGGACGGGTACTGCAAAAAGGGGATGATGGATGAAGCTCTGAAGCTGCGGGATGTCATGGAAAAGAAAGGGTTTCAATTTGATGTGTTTACGTACAGCACTGTAGCTAGCGGATTGTGTAAATTGAACAGAAATGAAGAGGCAAAGGCTTTGTTGTTCACAGTGGAAGAAAGAGGCGTGACTCCAAACGCCGTGTGTTTCACTATTCTGATTGACATATTCTGCAAGGAAGGAAACTTAGACGAAGCAAAACGGGTATTCAATGATATGAAAAGGAAGGGAGAGAGACCTAACACTGTCACATACAATGCTCTAATTGACGGGTATAGCAAGAACGGTTACATGAACAAAGCTCGTAAGCTAAAGAAGGAGATGGAAGACAAAGGCCTGAGGCCTAATACACGTACGTTGAATACACTTATACATGGCGAATGTGTTGACGGCAAGGTGGATGAGGCACTGAAATTATTTCGTGAGATGCCTCAGAGGAATTTAACTCGCAATGTTGTCACATATACAACTATGATTTCAGGTTTGTCGAAGAATGGGAGAACACACGAAGCTCTTAAATTGTATGATGAGATGGAAAAAGCAGGCCTTACACCTGATAAAAGACTATATCGACTATATCGTTCGCTTGTGGACTTAGTTGGCGTAGCCGAAAGAGAAGAATTAAGCTGA

Protein Analysis

586

Amino Acids

66.13

Weight (kDa)

8.85

Isoelectric Point (pI)

29.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 183 - 223 1.6e-07 PPR repeat family
PPR_long PF17177 200 - 303 5.8e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 201 - 259 2.6e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 213 - 256 2e-06 PPR repeat family
PPR_2 PF13041 247 - 295 4.3e-12 PPR repeat family
PPR_3 PF13812 269 - 326 1.6e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 277 - 308 6.5e-09 PPR repeat
PPR_2 PF13041 283 - 330 2.7e-13 PPR repeat family
PPR PF01535 285 - 314 5.6e-06 PPR repeat
PPR_1 PF12854 312 - 344 9.9e-06 PPR repeat
PPR PF01535 320 - 349 2.1e-06 PPR repeat
PPR_2 PF13041 324 - 354 8.5e-06 PPR repeat family
TPR_24 PF23276 325 - 398 6e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 347 - 380 5.5e-09 PPR repeat
PPR_2 PF13041 352 - 400 3.4e-15 PPR repeat family
PPR PF01535 354 - 384 7.2e-08 PPR repeat
PPR_2 PF13041 396 - 435 5.7e-06 PPR repeat family
TPR_24 PF23276 413 - 519 8.2e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 413 - 470 1.2e-11 Pentatricopeptide repeat domain
PPR_long PF17177 414 - 500 4.6e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 417 - 450 1.5e-12 PPR repeat
PPR_2 PF13041 421 - 466 4.1e-16 PPR repeat family
PPR PF01535 424 - 453 1.6e-08 PPR repeat
PPR_1 PF12854 453 - 485 9.6e-10 PPR repeat
PPR_2 PF13041 456 - 504 7.1e-17 PPR repeat family
PPR PF01535 459 - 489 4.7e-09 PPR repeat
PPR_1 PF12854 487 - 519 1.2e-11 PPR repeat
PPR_2 PF13041 491 - 540 1e-15 PPR repeat family
PPR PF01535 495 - 523 6.4e-07 PPR repeat
PPR_3 PF13812 514 - 562 3e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 523 - 555 3.5e-11 PPR repeat
PPR_2 PF13041 526 - 563 1.2e-12 PPR repeat family
PPR PF01535 529 - 559 1.8e-10 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32630
fragaria_vesca FvH4_6g16190
malus_domestica MD04G1094800.v1.1
prunus_persica Prupe.6G234000_v2.0.a1
pyrus_communis pycom04g08980
rosa_chinensis RchiOBHm_Chr3g0470041
rosa_laevigata RLG00000024301
rosa_multiflora Rmu_co8368425.1_g000001 Rmu_sc0017440.1_g000003
rosa_roxburghii Rroxscaffold_6G00411260
rosa_rugosa Rorug03G0106300.1
rosa_samantha Rh3CG170300
rosa_wichuraiana Rw3G014650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 738
AciI CCGC 6 cut(s) 45, 78, 887, 1010, 1126, 1188
AclI AACGTT 1 cut(s) 26
AcsI RAATTY 3 cut(s) 311, 419, 1567
AcuI CTGAAG 1 cut(s) 1139
AfaI GTAC 4 cut(s) 333, 1088, 1172, 1483
AfiI CCNNNNNNNGG 1 cut(s) 830
AflIII ACRYGT 1 cut(s) 1478
AgsI TTSAA 9 cut(s) 22, 31, 119, 229, 661, 1154, 1204, 1339, 1489
AjuI GAANNNNNNNTTGG 2 cut(s) 1050, 1082
AluBI AGCT 8 cut(s) 305, 1115, 1123, 1184, 1430, 1438, 1640, 1755
AluI AGCT 8 cut(s) 305, 1115, 1123, 1184, 1430, 1438, 1640, 1755
Alw21I GWGCWC 1 cut(s) 802
Alw26I GTCTC 3 cut(s) 161, 393, 1357
AoxI GGCC 4 cut(s) 404, 1462, 1469, 1672
ApeKI GCWGC 1 cut(s) 1123
ApoI RAATTY 3 cut(s) 311, 419, 1567
AseI ATTAAT 2 cut(s) 870, 975
Asp700I GAANNNNTTC 1 cut(s) 38
AspS9I GGNCC 2 cut(s) 404, 537
AsuC2I CCSGG 2 cut(s) 371, 452
AsuHPI GGTGA 2 cut(s) 757, 1033
AsuII TTCGAA 1 cut(s) 628
AsuNHI GCTAGC 1 cut(s) 1184
AvaII GGWCC 1 cut(s) 537
AxyI CCTNAGG 1 cut(s) 1466
BanII GRGCYC 1 cut(s) 54
BbsI GAAGAC 2 cut(s) 31, 1461
Bbv12I GWGCWC 1 cut(s) 802
BbvI GCAGC 1 cut(s) 1110
BccI CCATC 8 cut(s) 256, 709, 719, 994, 1000, 1099, 1444, 1654
BceAI ACGGC 2 cut(s) 1253, 1534
BcnI CCSGG 2 cut(s) 371, 452
BcoDI GTCTC 3 cut(s) 161, 393, 1357
BfaI CTAG 3 cut(s) 179, 306, 1185
BfmI CTRYAG 1 cut(s) 1179
BisI GCNGC 1 cut(s) 1124
BlsI GCNGC 1 cut(s) 1125
Bme1390I CCNGG 2 cut(s) 371, 452
Bme18I GGWCC 1 cut(s) 537
BmgT120I GGNCC 2 cut(s) 404, 537
BmiI GGNNCC 1 cut(s) 405
BmrFI CCNGG 2 cut(s) 371, 452
BmsI GCATC 3 cut(s) 356, 1020, 1545
BmtI GCTAGC 1 cut(s) 1188
BpiI GAAGAC 2 cut(s) 31, 1461
BpmI CTGGAG 2 cut(s) 136, 221
Bpu14I TTCGAA 1 cut(s) 628
BpuMI CCSGG 2 cut(s) 371, 452
BsaAI YACGTR 2 cut(s) 1170, 1481
BsaI GGTCTC 1 cut(s) 1357
BsaXI ACNNNNNCTCC 2 cut(s) 890, 920
Bsc4I CCNNNNNNNGG 1 cut(s) 830
Bse1I ACTGG 1 cut(s) 153
Bse21I CCTNAGG 1 cut(s) 1466
Bse3DI GCAATG 1 cut(s) 1585
BseGI GGATG 8 cut(s) 248, 420, 730, 749, 1107, 1114, 1135, 1534
BseLI CCNNNNNNNGG 1 cut(s) 830
BseMI GCAATG 1 cut(s) 1585
BseMII CTCAG 6 cut(s) 698, 774, 816, 931, 1457, 1574
BseNI ACTGG 1 cut(s) 153
BseRI GAGGAG 2 cut(s) 413, 494
BseXI GCAGC 1 cut(s) 1110
BseYI CCCAGC 1 cut(s) 425
Bsh1285I CGRYCG 1 cut(s) 607
BshFI GGCC 4 cut(s) 406, 1464, 1471, 1674
BsiEI CGRYCG 1 cut(s) 607
BsiHKAI GWGCWC 1 cut(s) 802
BsiSI CCGG 2 cut(s) 371, 451
BsiWI CGTACG 1 cut(s) 1481
BslFI GGGAC 1 cut(s) 442
BslI CCNNNNNNNGG 1 cut(s) 830
BsmAI GTCTC 3 cut(s) 161, 393, 1357
BsmBI CGTCTC 1 cut(s) 393
BsmFI GGGAC 1 cut(s) 442
BsmI GAATGC 1 cut(s) 114
BsnI GGCC 4 cut(s) 406, 1464, 1471, 1674
Bso31I GGTCTC 1 cut(s) 1357
Bsp119I TTCGAA 1 cut(s) 628
Bsp1286I GDGCHC 2 cut(s) 54, 802
Bsp143I GATC 1 cut(s) 604
BspACI CCGC 6 cut(s) 45, 78, 887, 1010, 1126, 1188
BspANI GGCC 4 cut(s) 406, 1464, 1471, 1674
BspCNI CTCAG 6 cut(s) 699, 775, 817, 930, 1458, 1573
BspLI GGNNCC 1 cut(s) 405
BspOI GCTAGC 1 cut(s) 1188
BspT104I TTCGAA 1 cut(s) 628
BspTNI GGTCTC 1 cut(s) 1357
BsrDI GCAATG 1 cut(s) 1585
BsrI ACTGG 1 cut(s) 153
BssMI GATC 1 cut(s) 604
Bst4CI ACNGT 6 cut(s) 623, 637, 1180, 1240, 1375, 1415
Bst6I CTCTTC 1 cut(s) 1209
BstBAI YACGTR 2 cut(s) 1170, 1481
BstBI TTCGAA 1 cut(s) 628
BstC8I GCNNGC 4 cut(s) 558, 985, 1186, 1672
BstDEI CTNAG 8 cut(s) 707, 783, 825, 917, 1315, 1466, 1560, 1723
BstENI CCTNNNNNAGG 1 cut(s) 828
BstF5I GGATG 8 cut(s) 248, 420, 730, 749, 1107, 1114, 1135, 1534
BstKTI GATC 1 cut(s) 607
BstMAI GTCTC 3 cut(s) 161, 393, 1357
BstMBI GATC 1 cut(s) 604
BstMCI CGRYCG 1 cut(s) 607
BstMWI GCNNNNNNNGC 1 cut(s) 989
BstSCI CCNGG 2 cut(s) 369, 450
BstSFI CTRYAG 1 cut(s) 1179
BstSNI TACGTA 1 cut(s) 1170
BstV1I GCAGC 1 cut(s) 1110
BstV2I GAAGAC 2 cut(s) 31, 1461
Bsu36I CCTNAGG 1 cut(s) 1466
BsuRI GGCC 4 cut(s) 406, 1464, 1471, 1674
BtsCI GGATG 8 cut(s) 248, 420, 730, 749, 1107, 1114, 1135, 1534
BtsIMutI CAGTG 5 cut(s) 925, 1176, 1245, 1371, 1535
Cac8I GCNNGC 4 cut(s) 558, 985, 1186, 1672
Cfr13I GGNCC 2 cut(s) 404, 537
CseI GACGC 1 cut(s) 375
Csp6I GTAC 4 cut(s) 332, 1087, 1171, 1482
CviAII CATG 4 cut(s) 588, 1135, 1420, 1502
CviQI GTAC 4 cut(s) 332, 1087, 1171, 1482
DdeI CTNAG 8 cut(s) 707, 783, 825, 917, 1315, 1466, 1560, 1723
DpnI GATC 1 cut(s) 606
DpnII GATC 1 cut(s) 604
Eam1104I CTCTTC 1 cut(s) 1209
EarI CTCTTC 1 cut(s) 1209
EciI GGCGGA 1 cut(s) 1025
Eco105I TACGTA 1 cut(s) 1170
Eco147I AGGCCT 3 cut(s) 1464, 1471, 1674
Eco24I GRGCYC 1 cut(s) 54
Eco31I GGTCTC 1 cut(s) 1357
Eco47I GGWCC 1 cut(s) 537
Eco57I CTGAAG 1 cut(s) 1139
Eco81I CCTNAGG 1 cut(s) 1466
EcoNI CCTNNNNNAGG 1 cut(s) 828
EcoO109I RGGNCCY 2 cut(s) 404, 537
EcoT38I GRGCYC 1 cut(s) 54
Esp3I CGTCTC 1 cut(s) 393
FaeI CATG 4 cut(s) 591, 1138, 1423, 1505
FalI AAGNNNNNCTT 4 cut(s) 23, 55, 1659, 1691
FaqI GGGAC 1 cut(s) 442
FatI CATG 4 cut(s) 587, 1134, 1419, 1501
FauI CCCGC 3 cut(s) 52, 880, 1119
Fnu4HI GCNGC 1 cut(s) 1124
FokI GGATG 8 cut(s) 235, 427, 736, 737, 1114, 1121, 1142, 1541
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 1124
FspBI CTAG 3 cut(s) 179, 306, 1185
GluI GCNGC 1 cut(s) 1124
GsaI CCCAGC 1 cut(s) 429
GsuI CTGGAG 2 cut(s) 136, 221
HaeIII GGCC 4 cut(s) 406, 1464, 1471, 1674
HapII CCGG 2 cut(s) 371, 451
HgaI GACGC 1 cut(s) 375
Hin1II CATG 4 cut(s) 591, 1138, 1423, 1505
HincII GTYRAC 1 cut(s) 1516
HindII GTYRAC 1 cut(s) 1516
HinfI GANTC 3 cut(s) 584, 630, 1258
HpaII CCGG 2 cut(s) 371, 451
HphI GGTGA 2 cut(s) 757, 1033
Hpy166II GTNNAC 5 cut(s) 1054, 1167, 1236, 1516, 1720
Hpy188I TCNGA 7 cut(s) 379, 393, 708, 784, 1119, 1287, 1563
Hpy188III TCNNGA 3 cut(s) 238, 349, 1550
Hpy8I GTNNAC 5 cut(s) 1054, 1167, 1236, 1516, 1720
HpyAV CCTTC 7 cut(s) 28, 669, 673, 715, 1301, 1348, 1438
HpyCH4III ACNGT 6 cut(s) 623, 637, 1180, 1240, 1375, 1415
HpyCH4IV ACGT 7 cut(s) 26, 56, 276, 1050, 1169, 1480, 1484
HpyCH4V TGCA 9 cut(s) 291, 461, 543, 560, 944, 987, 1033, 1092, 1302
HpyF10VI GCNNNNNNNGC 1 cut(s) 989
HpyF3I CTNAG 8 cut(s) 707, 783, 825, 917, 1315, 1466, 1560, 1723
HpySE526I ACGT 7 cut(s) 26, 56, 276, 1050, 1169, 1480, 1484
Hsp92II CATG 4 cut(s) 591, 1138, 1423, 1505
Kzo9I GATC 1 cut(s) 604
Lsp1109I GCAGC 1 cut(s) 1110
LweI GCATC 3 cut(s) 356, 1020, 1545
MaeI CTAG 3 cut(s) 179, 306, 1185
MaeII ACGT 7 cut(s) 26, 56, 276, 1050, 1169, 1480, 1484
MaeIII GTNAC 7 cut(s) 277, 346, 745, 1255, 1375, 1415, 1585
MalI GATC 1 cut(s) 606
MboI GATC 1 cut(s) 604
MhlI GDGCHC 2 cut(s) 54, 802
MlyI GAGTC 1 cut(s) 1252
MmeI TCCRAC 1 cut(s) 572
MroXI GAANNNNTTC 1 cut(s) 38
MseI TTAA 6 cut(s) 267, 870, 975, 1571, 1644, 1751
MslI CAYNNNNRTG 1 cut(s) 1019
MspI CCGG 2 cut(s) 371, 451
MspR9I CCNGG 2 cut(s) 371, 452
Mva1269I GAATGC 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 989
NciI CCSGG 2 cut(s) 371, 452
NdeII GATC 1 cut(s) 604
NheI GCTAGC 1 cut(s) 1184
NlaIII CATG 4 cut(s) 591, 1138, 1423, 1505
NlaIV GGNNCC 1 cut(s) 405
NmeAIII GCCGAG 1 cut(s) 106
NmuCI GTSAC 5 cut(s) 346, 745, 1255, 1375, 1585
NspV TTCGAA 1 cut(s) 628
PceI AGGCCT 3 cut(s) 1464, 1471, 1674
PcsI WCGNNNNNNNCGW 2 cut(s) 62, 1705
PctI GAATGC 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 2 cut(s) 584, 630
Pfl23II CGTACG 1 cut(s) 1481
PkrI GCNGC 1 cut(s) 1125
Ple19I CGATCG 1 cut(s) 607
PleI GAGTC 1 cut(s) 1252
PpsI GAGTC 1 cut(s) 1252
Ppu21I YACGTR 2 cut(s) 1170, 1481
PpuMI RGGWCCY 1 cut(s) 537
PshBI ATTAAT 2 cut(s) 870, 975
PsiI TTATAA 1 cut(s) 738
Psp1406I AACGTT 1 cut(s) 26
Psp5II RGGWCCY 1 cut(s) 537
PspFI CCCAGC 1 cut(s) 425
PspLI CGTACG 1 cut(s) 1481
PspN4I GGNNCC 1 cut(s) 405
PspPI GGNCC 2 cut(s) 404, 537
PspPPI RGGWCCY 1 cut(s) 537
PvuI CGATCG 1 cut(s) 607
RsaI GTAC 4 cut(s) 333, 1088, 1172, 1483
RsaNI GTAC 4 cut(s) 332, 1087, 1171, 1482
RseI CAYNNNNRTG 1 cut(s) 1019
SaqAI TTAA 6 cut(s) 267, 870, 975, 1571, 1644, 1751
SatI GCNGC 1 cut(s) 1124
Sau3AI GATC 1 cut(s) 604
Sau96I GGNCC 2 cut(s) 404, 537
SchI GAGTC 1 cut(s) 1252
ScrFI CCNGG 2 cut(s) 371, 452
SduI GDGCHC 2 cut(s) 54, 802
SfaNI GCATC 3 cut(s) 356, 1020, 1545
SfcI CTRYAG 1 cut(s) 1179
SfuI TTCGAA 1 cut(s) 628
SinI GGWCC 1 cut(s) 537
SmiMI CAYNNNNRTG 1 cut(s) 1019
SnaBI TACGTA 1 cut(s) 1170
SseBI AGGCCT 3 cut(s) 1464, 1471, 1674
SsiI CCGC 6 cut(s) 45, 78, 887, 1010, 1126, 1188
SspMI CTAG 3 cut(s) 179, 306, 1185
StuI AGGCCT 3 cut(s) 1464, 1471, 1674
StyD4I CCNGG 2 cut(s) 369, 450
TaaI ACNGT 6 cut(s) 623, 637, 1180, 1240, 1375, 1415
TaiI ACGT 7 cut(s) 29, 59, 279, 1053, 1172, 1483, 1487
TaqI TCGA 8 cut(s) 65, 364, 603, 607, 628, 863, 1616, 1699
TatI WGTACW 1 cut(s) 331
TfiI GAWTC 2 cut(s) 584, 630
Tru1I TTAA 6 cut(s) 267, 870, 975, 1571, 1644, 1751
Tru9I TTAA 6 cut(s) 267, 870, 975, 1571, 1644, 1751
TscAI CASTG 5 cut(s) 925, 1183, 1245, 1378, 1542
TseFI GTSAC 5 cut(s) 346, 745, 1255, 1375, 1585
TseI GCWGC 1 cut(s) 1123
Tsp45I GTSAC 5 cut(s) 346, 745, 1255, 1375, 1585
TspDTI ATGAA 9 cut(s) 49, 338, 431, 576, 1058, 1125, 1227, 1361, 1436
TspRI CASTG 5 cut(s) 925, 1183, 1245, 1378, 1542
VpaK11BI GGWCC 1 cut(s) 537
VspI ATTAAT 2 cut(s) 870, 975
XagI CCTNNNNNAGG 1 cut(s) 828
XapI RAATTY 3 cut(s) 311, 419, 1567
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 3 cut(s) 179, 306, 1185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.