Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G32630 |
| fragaria_vesca | FvH4_6g16190 |
| malus_domestica | MD04G1094800.v1.1 |
| prunus_persica | Prupe.6G234000_v2.0.a1 |
| pyrus_communis | pycom04g08980 |
| rosa_chinensis | RchiOBHm_Chr3g0470041 |
| rosa_laevigata | RLG00000024301 |
| rosa_multiflora | Rmu_co8368425.1_g000001 Rmu_sc0017440.1_g000003 |
| rosa_roxburghii | Rroxscaffold_6G00411260 |
| rosa_rugosa | Rorug03G0106300.1 |
| rosa_samantha | Rh3CG170300 |
| rosa_wichuraiana | Rw3G014650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 849 |
| Acc36I | ACCTGC | 1 cut(s) | 1432 |
| AccI | GTMKAC | 3 cut(s) | 730, 1592, 1703 |
| AciI | CCGC | 4 cut(s) | 200, 512, 854, 1675 |
| AcsI | RAATTY | 3 cut(s) | 317, 425, 1678 |
| AcuI | CTGAAG | 1 cut(s) | 50 |
| AfaI | GTAC | 2 cut(s) | 1199, 1514 |
| Alw26I | GTCTC | 4 cut(s) | 358, 397, 428, 1468 |
| AoxI | GGCC | 4 cut(s) | 112, 813, 1048, 1783 |
| ApeKI | GCWGC | 2 cut(s) | 1234, 1824 |
| ApoI | RAATTY | 3 cut(s) | 317, 425, 1678 |
| AseI | ATTAAT | 2 cut(s) | 981, 1086 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 17, 38 |
| AspS9I | GGNCC | 1 cut(s) | 543 |
| AsuHPI | GGTGA | 3 cut(s) | 703, 728, 1144 |
| AvaII | GGWCC | 1 cut(s) | 543 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1812, 1844 |
| BbsI | GAAGAC | 1 cut(s) | 1572 |
| BbvCI | CCTCAGC | 1 cut(s) | 402 |
| BbvI | GCAGC | 2 cut(s) | 1221, 1836 |
| BclI | TGATCA | 1 cut(s) | 610 |
| BcoDI | GTCTC | 4 cut(s) | 358, 397, 428, 1468 |
| BfaI | CTAG | 1 cut(s) | 1296 |
| BfmI | CTRYAG | 3 cut(s) | 1201, 1235, 1290 |
| BfuAI | ACCTGC | 1 cut(s) | 1432 |
| BisI | GCNGC | 3 cut(s) | 855, 1235, 1825 |
| BlsI | GCNGC | 3 cut(s) | 856, 1236, 1826 |
| Bme18I | GGWCC | 1 cut(s) | 543 |
| BmgT120I | GGNCC | 1 cut(s) | 543 |
| BmiI | GGNNCC | 1 cut(s) | 1371 |
| BmsI | GCATC | 4 cut(s) | 362, 898, 1131, 1569 |
| BpiI | GAAGAC | 1 cut(s) | 1572 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1770, 1802 |
| Bpu10I | CCTNAGC | 1 cut(s) | 402 |
| BpuEI | CTTGAG | 2 cut(s) | 235, 838 |
| BsaAI | YACGTR | 3 cut(s) | 1590, 1596, 1701 |
| BsaBI | GATNNNNATC | 1 cut(s) | 960 |
| BsaI | GGTCTC | 1 cut(s) | 1468 |
| Bse3DI | GCAATG | 1 cut(s) | 1716 |
| Bse8I | GATNNNNATC | 1 cut(s) | 960 |
| BseGI | GGATG | 4 cut(s) | 412, 1218, 1645, 1738 |
| BseJI | GATNNNNATC | 1 cut(s) | 960 |
| BseMI | GCAATG | 1 cut(s) | 1716 |
| BseMII | CTCAG | 2 cut(s) | 23, 393 |
| BseRI | GAGGAG | 2 cut(s) | 500, 1340 |
| BseXI | GCAGC | 2 cut(s) | 1221, 1836 |
| BshFI | GGCC | 4 cut(s) | 114, 815, 1050, 1785 |
| BslFI | GGGAC | 2 cut(s) | 182, 1040 |
| BsmAI | GTCTC | 4 cut(s) | 358, 397, 428, 1468 |
| BsmFI | GGGAC | 2 cut(s) | 182, 1040 |
| BsnI | GGCC | 4 cut(s) | 114, 815, 1050, 1785 |
| Bso31I | GGTCTC | 1 cut(s) | 1468 |
| Bsp143I | GATC | 1 cut(s) | 610 |
| BspACI | CCGC | 4 cut(s) | 200, 512, 854, 1675 |
| BspANI | GGCC | 4 cut(s) | 114, 815, 1050, 1785 |
| BspCNI | CTCAG | 2 cut(s) | 22, 394 |
| BspHI | TCATGA | 1 cut(s) | 1660 |
| BspLI | GGNNCC | 1 cut(s) | 1371 |
| BspMAI | CTGCAG | 2 cut(s) | 1205, 1239 |
| BspMI | ACCTGC | 1 cut(s) | 1432 |
| BspQI | GCTCTTC | 1 cut(s) | 152 |
| BspTNI | GGTCTC | 1 cut(s) | 1468 |
| BsrDI | GCAATG | 1 cut(s) | 1716 |
| BssMI | GATC | 1 cut(s) | 610 |
| BssNAI | GTATAC | 2 cut(s) | 1593, 1704 |
| Bst1107I | GTATAC | 2 cut(s) | 1593, 1704 |
| Bst4CI | ACNGT | 2 cut(s) | 643, 1486 |
| Bst6I | CTCTTC | 2 cut(s) | 44, 152 |
| BstBAI | YACGTR | 3 cut(s) | 1590, 1596, 1701 |
| BstC8I | GCNNGC | 4 cut(s) | 299, 564, 866, 1096 |
| BstDEI | CTNAG | 6 cut(s) | 9, 81, 312, 402, 1229, 1728 |
| BstF5I | GGATG | 4 cut(s) | 412, 1218, 1645, 1738 |
| BstKTI | GATC | 1 cut(s) | 613 |
| BstMAI | GTCTC | 4 cut(s) | 358, 397, 428, 1468 |
| BstMBI | GATC | 1 cut(s) | 610 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 284 |
| BstNSI | RCATGY | 1 cut(s) | 864 |
| BstSFI | CTRYAG | 3 cut(s) | 1201, 1235, 1290 |
| BstSNI | TACGTA | 2 cut(s) | 1590, 1596 |
| BstV1I | GCAGC | 2 cut(s) | 1221, 1836 |
| BstV2I | GAAGAC | 1 cut(s) | 1572 |
| BstZ17I | GTATAC | 2 cut(s) | 1593, 1704 |
| BsuRI | GGCC | 4 cut(s) | 114, 815, 1050, 1785 |
| BtgZI | GCGATG | 1 cut(s) | 1587 |
| BtsCI | GGATG | 4 cut(s) | 412, 1218, 1645, 1738 |
| BtsIMutI | CAGTG | 3 cut(s) | 639, 1482, 1646 |
| BveI | ACCTGC | 1 cut(s) | 1432 |
| Cac8I | GCNNGC | 4 cut(s) | 299, 564, 866, 1096 |
| CciI | TCATGA | 1 cut(s) | 1660 |
| Cfr13I | GGNCC | 1 cut(s) | 543 |
| CseI | GACGC | 1 cut(s) | 664 |
| Csp6I | GTAC | 2 cut(s) | 1198, 1513 |
| CviAII | CATG | 6 cut(s) | 281, 861, 935, 1246, 1613, 1661 |
| CviQI | GTAC | 2 cut(s) | 1198, 1513 |
| DdeI | CTNAG | 6 cut(s) | 9, 81, 312, 402, 1229, 1728 |
| DpnI | GATC | 1 cut(s) | 612 |
| DpnII | GATC | 1 cut(s) | 610 |
| Eam1104I | CTCTTC | 2 cut(s) | 44, 152 |
| EarI | CTCTTC | 2 cut(s) | 44, 152 |
| Eco105I | TACGTA | 2 cut(s) | 1590, 1596 |
| Eco147I | AGGCCT | 4 cut(s) | 114, 815, 1050, 1785 |
| Eco31I | GGTCTC | 1 cut(s) | 1468 |
| Eco32I | GATATC | 1 cut(s) | 63 |
| Eco47I | GGWCC | 1 cut(s) | 543 |
| Eco57I | CTGAAG | 1 cut(s) | 50 |
| EcoO109I | RGGNCCY | 1 cut(s) | 543 |
| EcoRV | GATATC | 1 cut(s) | 63 |
| FaeI | CATG | 6 cut(s) | 284, 864, 938, 1249, 1616, 1664 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 23, 55 |
| FaqI | GGGAC | 2 cut(s) | 182, 1040 |
| FatI | CATG | 6 cut(s) | 280, 860, 934, 1245, 1612, 1660 |
| FauI | CCCGC | 1 cut(s) | 207 |
| FbaI | TGATCA | 1 cut(s) | 610 |
| FblI | GTMKAC | 3 cut(s) | 730, 1592, 1703 |
| Fnu4HI | GCNGC | 3 cut(s) | 855, 1235, 1825 |
| FokI | GGATG | 4 cut(s) | 419, 1225, 1652, 1745 |
| Fsp4HI | GCNGC | 3 cut(s) | 855, 1235, 1825 |
| FspBI | CTAG | 1 cut(s) | 1296 |
| GluI | GCNGC | 3 cut(s) | 855, 1235, 1825 |
| HaeIII | GGCC | 4 cut(s) | 114, 815, 1050, 1785 |
| HgaI | GACGC | 1 cut(s) | 664 |
| Hin1II | CATG | 6 cut(s) | 284, 864, 938, 1249, 1616, 1664 |
| HindIII | AAGCTT | 1 cut(s) | 1749 |
| HphI | GGTGA | 3 cut(s) | 703, 728, 1144 |
| Hpy166II | GTNNAC | 8 cut(s) | 731, 1066, 1106, 1165, 1278, 1347, 1593, 1704 |
| Hpy188I | TCNGA | 4 cut(s) | 12, 385, 771, 1266 |
| Hpy188III | TCNNGA | 4 cut(s) | 1057, 1451, 1519, 1661 |
| Hpy8I | GTNNAC | 8 cut(s) | 731, 1066, 1106, 1165, 1278, 1347, 1593, 1704 |
| Hpy99I | CGWCG | 2 cut(s) | 1034, 1697 |
| HpyCH4III | ACNGT | 2 cut(s) | 643, 1486 |
| HpyCH4IV | ACGT | 5 cut(s) | 1161, 1589, 1595, 1692, 1700 |
| HpyCH4V | TGCA | 8 cut(s) | 297, 467, 864, 1098, 1144, 1203, 1237, 1413 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 284 |
| HpyF3I | CTNAG | 6 cut(s) | 9, 81, 312, 402, 1229, 1728 |
| HpySE526I | ACGT | 5 cut(s) | 1161, 1589, 1595, 1692, 1700 |
| Hsp92II | CATG | 6 cut(s) | 284, 864, 938, 1249, 1616, 1664 |
| Ksp22I | TGATCA | 1 cut(s) | 610 |
| Kzo9I | GATC | 1 cut(s) | 610 |
| LguI | GCTCTTC | 1 cut(s) | 152 |
| LmnI | GCTCC | 1 cut(s) | 1375 |
| Lsp1109I | GCAGC | 2 cut(s) | 1221, 1836 |
| LweI | GCATC | 4 cut(s) | 362, 898, 1131, 1569 |
| MaeI | CTAG | 1 cut(s) | 1296 |
| MaeII | ACGT | 5 cut(s) | 1161, 1589, 1595, 1692, 1700 |
| MaeIII | GTNAC | 4 cut(s) | 751, 1486, 1688, 1696 |
| MalI | GATC | 1 cut(s) | 612 |
| MboI | GATC | 1 cut(s) | 610 |
| MmeI | TCCRAC | 1 cut(s) | 90 |
| MroXI | GAANNNNTTC | 2 cut(s) | 17, 38 |
| MseI | TTAA | 9 cut(s) | 738, 807, 981, 1037, 1086, 1179, 1682, 1755, 1846 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1130 |
| MspA1I | CMGCKG | 1 cut(s) | 1675 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 284 |
| NdeII | GATC | 1 cut(s) | 610 |
| NlaIII | CATG | 6 cut(s) | 284, 864, 938, 1249, 1616, 1664 |
| NlaIV | GGNNCC | 1 cut(s) | 1371 |
| NmuCI | GTSAC | 1 cut(s) | 1696 |
| NspI | RCATGY | 1 cut(s) | 864 |
| PagI | TCATGA | 1 cut(s) | 1660 |
| PceI | AGGCCT | 4 cut(s) | 114, 815, 1050, 1785 |
| PciSI | GCTCTTC | 1 cut(s) | 152 |
| PdmI | GAANNNNTTC | 2 cut(s) | 17, 38 |
| PkrI | GCNGC | 3 cut(s) | 856, 1236, 1826 |
| Ppu21I | YACGTR | 3 cut(s) | 1590, 1596, 1701 |
| PpuMI | RGGWCCY | 1 cut(s) | 543 |
| PshBI | ATTAAT | 2 cut(s) | 981, 1086 |
| PsiI | TTATAA | 1 cut(s) | 849 |
| Psp5II | RGGWCCY | 1 cut(s) | 543 |
| PspN4I | GGNNCC | 1 cut(s) | 1371 |
| PspPI | GGNCC | 1 cut(s) | 543 |
| PspPPI | RGGWCCY | 1 cut(s) | 543 |
| PstI | CTGCAG | 2 cut(s) | 1205, 1239 |
| RsaI | GTAC | 2 cut(s) | 1199, 1514 |
| RsaNI | GTAC | 2 cut(s) | 1198, 1513 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1130 |
| SapI | GCTCTTC | 1 cut(s) | 152 |
| SaqAI | TTAA | 9 cut(s) | 738, 807, 981, 1037, 1086, 1179, 1682, 1755, 1846 |
| SatI | GCNGC | 3 cut(s) | 855, 1235, 1825 |
| Sau3AI | GATC | 1 cut(s) | 610 |
| Sau96I | GGNCC | 1 cut(s) | 543 |
| SfaNI | GCATC | 4 cut(s) | 362, 898, 1131, 1569 |
| SfcI | CTRYAG | 3 cut(s) | 1201, 1235, 1290 |
| SinI | GGWCC | 1 cut(s) | 543 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1130 |
| SmlI | CTYRAG | 2 cut(s) | 214, 817 |
| SmoI | CTYRAG | 2 cut(s) | 214, 817 |
| SnaBI | TACGTA | 2 cut(s) | 1590, 1596 |
| SseBI | AGGCCT | 4 cut(s) | 114, 815, 1050, 1785 |
| SsiI | CCGC | 4 cut(s) | 200, 512, 854, 1675 |
| SspMI | CTAG | 1 cut(s) | 1296 |
| StuI | AGGCCT | 4 cut(s) | 114, 815, 1050, 1785 |
| TaaI | ACNGT | 2 cut(s) | 643, 1486 |
| TaiI | ACGT | 5 cut(s) | 1164, 1592, 1598, 1695, 1703 |
| TaqI | TCGA | 4 cut(s) | 370, 974, 1029, 1431 |
| TauI | GCSGC | 1 cut(s) | 857 |
| Tru1I | TTAA | 9 cut(s) | 738, 807, 981, 1037, 1086, 1179, 1682, 1755, 1846 |
| Tru9I | TTAA | 9 cut(s) | 738, 807, 981, 1037, 1086, 1179, 1682, 1755, 1846 |
| TscAI | CASTG | 3 cut(s) | 646, 1489, 1653 |
| TseFI | GTSAC | 1 cut(s) | 1696 |
| TseI | GCWGC | 2 cut(s) | 1234, 1824 |
| Tsp45I | GTSAC | 1 cut(s) | 1696 |
| TspRI | CASTG | 3 cut(s) | 646, 1489, 1653 |
| VpaK11BI | GGWCC | 1 cut(s) | 543 |
| VspI | ATTAAT | 2 cut(s) | 981, 1086 |
| XapI | RAATTY | 3 cut(s) | 317, 425, 1678 |
| XceI | RCATGY | 1 cut(s) | 864 |
| XmiI | GTMKAC | 3 cut(s) | 730, 1592, 1703 |
| XmnI | GAANNNNTTC | 2 cut(s) | 17, 38 |
| XspI | CTAG | 1 cut(s) | 1296 |