Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0017068

Physical Location & Seq

Genomic Coordinates Forward (+)

11264492 .. 11265966

Gene Structure 1475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g08980.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGTCTTCTCATATAGCCTTCAAAACGTTGAAGAAAGTCTTCCCCGCAGAGCCCACATTCATATCGAACCAAGAAACCGCCGAGAAGATTGTCAAAACCCTAATCAAATCAGGCACTCAACCCCTCAAATCAACCTCATCATCTCTGCTATCCAGTCTCAATCCCCACATAACAAACCTTGTCCTCTCAAACCCACTAGTCCTACCACATTCTTGCGTAAAATTATTCAACTTTCTCCAGAAAAATCCATCCCACAAACCCAATCTTAAATCCCACGTTACCCTCCTTTGCAGGCTTTATCAAGCTAGAAAATTTGCCCAGATGAAGATTGTACTGAATGTTATTGTCACGAATGATAATCTTCGATGCCCGGTTTCCGAAATTGCGTCTCTGATTGAGGAGGGGCCTAATGGGATGAAATTTGCTGGGACATTGTGCGATATGCTGTTCCGGGTTTATGCAGAAAACAAAATGGTTGAGGAGGCTATTGGGGTTTTTGATTATGTGGGCAGGAATGGGATTGAGATTAGAGAAAGGTCCTGCATTGTGCTTTTGCTTGCATTGAGGAAATGTGGTCGAGTGGATTCATGTTGGAGGTTCTTCGATCGAATGGTCAAAAACGGTGTTCGAATTACGGTTCTTACATATAACACAATTTTGAAAGCATACATTGGAAGGAAGGATTTTGAGGGCGTTAGTGAGGTTCTGAGGTTGATGGAGAAGGATGGTGTGGGTTATAATGTGGTGACATCCACGCTTTTGATAGATTTGTTTGGTAGTTCTGAGAGGATTGAGGATGCTCAAAAGGTATTTGAGGAAATGCCTGAGAGAGGGATAGAACCAGATTTGTATGTTTATACCTCGATTATTAATTGCTATTGTAAAGCGGGAAATATGGAGAGAGCGTTGTTTCTGCTCGGTGAATGTAATCAAAGGGGGTTTGTACCAAATGAGCATACTTACGGGGCATTGATTAATGGTGCGTGCAAGGCAGGGCAGATGGAGATGGCGGACATCTTGGTGAATGAGATGCAGAGTAAAGGCATTGACGTAAACCAAGTGGTGTTTCATACACTAATGGACGGGTACTGCAAAAAGGGGATGATGGATGAAGCTCTGAAGCTGCGGGATGTCATGGAAAAGAAAGGGTTTCAATTTGATGTGTTTACGTACAGCACTATAGCTAGCGGATTGTATAAATTGAATAGAAATGAGGAGGCAAAGGCTTTGTTGTTCACAGTGGAAGAAAGAGGCGTGACTCCAAATGCTGTGTGTTTCACTATTCTGATAGACATATTCTGCAAGGAAGGAAACTTAGAAGAAGCAAAACGAGTATTCAATGATATGAAAAGGAAGGGAGAGAGACCTAACACTGTCACATACAATGCTCTAATTGACGGGTATAGAGATGGAAGACAAAGGCTTGATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

478

Amino Acids

53.88

Weight (kDa)

8.52

Isoelectric Point (pI)

32.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32630
fragaria_vesca	FvH4_6g16190
malus_domestica	MD04G1094800.v1.1
prunus_persica	Prupe.6G234000_v2.0.a1
pyrus_communis	pycom04g08980
rosa_chinensis	RchiOBHm_Chr3g0470041
rosa_laevigata	RLG00000024301
rosa_multiflora	Rmu_co8368425.1_g000001 Rmu_sc0017440.1_g000003
rosa_roxburghii	Rroxscaffold_6G00411260
rosa_rugosa	Rorug03G0106300.1
rosa_samantha	Rh3CG170300
rosa_wichuraiana	Rw3G014650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	738
AciI	CCGC	6 cut(s)	45, 78, 887, 1010, 1126, 1188
AclI	AACGTT	1 cut(s)	26
AcsI	RAATTY	2 cut(s)	311, 419
AcuI	CTGAAG	1 cut(s)	1139
AfaI	GTAC	4 cut(s)	333, 945, 1088, 1172
AfiI	CCNNNNNNNGG	1 cut(s)	830
AgsI	TTSAA	7 cut(s)	22, 31, 229, 661, 1154, 1204, 1339
AhlI	ACTAGT	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	2 cut(s)	1050, 1082
AluBI	AGCT	4 cut(s)	305, 1115, 1123, 1184
AluI	AGCT	4 cut(s)	305, 1115, 1123, 1184
Alw26I	GTCTC	3 cut(s)	161, 393, 1357
AoxI	GGCC	1 cut(s)	404
ApeKI	GCWGC	1 cut(s)	1123
ApoI	RAATTY	2 cut(s)	311, 419
AseI	ATTAAT	2 cut(s)	870, 975
Asp700I	GAANNNNTTC	1 cut(s)	38
AspS9I	GGNCC	2 cut(s)	404, 537
AsuC2I	CCSGG	2 cut(s)	371, 452
AsuHPI	GGTGA	3 cut(s)	757, 932, 1033
AsuII	TTCGAA	1 cut(s)	628
AsuNHI	GCTAGC	1 cut(s)	1184
AvaII	GGWCC	1 cut(s)	537
BanII	GRGCYC	1 cut(s)	54
BbsI	GAAGAC	2 cut(s)	31, 1420
BbvI	GCAGC	1 cut(s)	1110
BccI	CCATC	7 cut(s)	256, 709, 719, 994, 1000, 1099, 1403
BcnI	CCSGG	2 cut(s)	371, 452
BcoDI	GTCTC	3 cut(s)	161, 393, 1357
BcuI	ACTAGT	1 cut(s)	196
BfaI	CTAG	3 cut(s)	197, 306, 1185
BfmI	CTRYAG	1 cut(s)	1179
BisI	GCNGC	1 cut(s)	1124
BlsI	GCNGC	1 cut(s)	1125
Bme1390I	CCNGG	2 cut(s)	371, 452
Bme18I	GGWCC	1 cut(s)	537
BmgT120I	GGNCC	2 cut(s)	404, 537
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	2 cut(s)	371, 452
BmsI	GCATC	4 cut(s)	356, 787, 1020, 1417
BmtI	GCTAGC	1 cut(s)	1188
BpiI	GAAGAC	2 cut(s)	31, 1420
BpmI	CTGGAG	1 cut(s)	221
Bpu14I	TTCGAA	1 cut(s)	628
BpuMI	CCSGG	2 cut(s)	371, 452
BsaAI	YACGTR	1 cut(s)	1170
BsaI	GGTCTC	1 cut(s)	1357
BsaXI	ACNNNNNCTCC	2 cut(s)	890, 920
Bsc4I	CCNNNNNNNGG	1 cut(s)	830
Bse1I	ACTGG	1 cut(s)	153
BseGI	GGATG	8 cut(s)	248, 420, 730, 749, 802, 1107, 1114, 1135
BseLI	CCNNNNNNNGG	1 cut(s)	830
BseMII	CTCAG	3 cut(s)	698, 774, 816
BseNI	ACTGG	1 cut(s)	153
BseRI	GAGGAG	3 cut(s)	413, 494, 1229
BseXI	GCAGC	1 cut(s)	1110
BseYI	CCCAGC	1 cut(s)	425
Bsh1285I	CGRYCG	1 cut(s)	607
BshFI	GGCC	1 cut(s)	406
BsiEI	CGRYCG	1 cut(s)	607
BsiSI	CCGG	2 cut(s)	371, 451
BslFI	GGGAC	1 cut(s)	442
BslI	CCNNNNNNNGG	1 cut(s)	830
BsmAI	GTCTC	3 cut(s)	161, 393, 1357
BsmBI	CGTCTC	1 cut(s)	393
BsmFI	GGGAC	1 cut(s)	442
BsnI	GGCC	1 cut(s)	406
Bso31I	GGTCTC	1 cut(s)	1357
Bsp119I	TTCGAA	1 cut(s)	628
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	1 cut(s)	604
BspACI	CCGC	6 cut(s)	45, 78, 887, 1010, 1126, 1188
BspANI	GGCC	1 cut(s)	406
BspCNI	CTCAG	3 cut(s)	699, 775, 817
BspLI	GGNNCC	1 cut(s)	405
BspOI	GCTAGC	1 cut(s)	1188
BspT104I	TTCGAA	1 cut(s)	628
BspTNI	GGTCTC	1 cut(s)	1357
BsrI	ACTGG	1 cut(s)	153
BssMI	GATC	1 cut(s)	604
Bst4CI	ACNGT	4 cut(s)	623, 637, 1240, 1375
BstBAI	YACGTR	1 cut(s)	1170
BstBI	TTCGAA	1 cut(s)	628
BstC8I	GCNNGC	4 cut(s)	293, 558, 985, 1186
BstDEI	CTNAG	4 cut(s)	707, 783, 825, 1315
BstENI	CCTNNNNNAGG	1 cut(s)	828
BstF5I	GGATG	8 cut(s)	248, 420, 730, 749, 802, 1107, 1114, 1135
BstKTI	GATC	1 cut(s)	607
BstMAI	GTCTC	3 cut(s)	161, 393, 1357
BstMBI	GATC	1 cut(s)	604
BstMCI	CGRYCG	1 cut(s)	607
BstMWI	GCNNNNNNNGC	1 cut(s)	989
BstSCI	CCNGG	2 cut(s)	369, 450
BstSFI	CTRYAG	1 cut(s)	1179
BstSNI	TACGTA	1 cut(s)	1170
BstV1I	GCAGC	1 cut(s)	1110
BstV2I	GAAGAC	2 cut(s)	31, 1420
BsuRI	GGCC	1 cut(s)	406
BtsCI	GGATG	8 cut(s)	248, 420, 730, 749, 802, 1107, 1114, 1135
BtsIMutI	CAGTG	2 cut(s)	1245, 1371
Cac8I	GCNNGC	4 cut(s)	293, 558, 985, 1186
Cfr13I	GGNCC	2 cut(s)	404, 537
CseI	GACGC	1 cut(s)	375
Csp6I	GTAC	4 cut(s)	332, 944, 1087, 1171
CviAII	CATG	2 cut(s)	588, 1135
CviQI	GTAC	4 cut(s)	332, 944, 1087, 1171
DdeI	CTNAG	4 cut(s)	707, 783, 825, 1315
DpnI	GATC	1 cut(s)	606
DpnII	GATC	1 cut(s)	604
EciI	GGCGGA	1 cut(s)	1025
Eco105I	TACGTA	1 cut(s)	1170
Eco24I	GRGCYC	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	1357
Eco47I	GGWCC	1 cut(s)	537
Eco57I	CTGAAG	1 cut(s)	1139
EcoNI	CCTNNNNNAGG	1 cut(s)	828
EcoO109I	RGGNCCY	2 cut(s)	404, 537
EcoT38I	GRGCYC	1 cut(s)	54
Esp3I	CGTCTC	1 cut(s)	393
FaeI	CATG	2 cut(s)	591, 1138
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	2 cut(s)	587, 1134
FauI	CCCGC	3 cut(s)	52, 880, 1119
Fnu4HI	GCNGC	1 cut(s)	1124
FokI	GGATG	8 cut(s)	235, 427, 736, 737, 809, 1114, 1121, 1142
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	1124
FspBI	CTAG	3 cut(s)	197, 306, 1185
GluI	GCNGC	1 cut(s)	1124
GsaI	CCCAGC	1 cut(s)	429
GsuI	CTGGAG	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	406
HapII	CCGG	2 cut(s)	371, 451
HgaI	GACGC	1 cut(s)	375
Hin1II	CATG	2 cut(s)	591, 1138
HinfI	GANTC	2 cut(s)	584, 1258
HpaII	CCGG	2 cut(s)	371, 451
HphI	GGTGA	3 cut(s)	757, 932, 1033
Hpy166II	GTNNAC	3 cut(s)	1054, 1167, 1236
Hpy188I	TCNGA	6 cut(s)	379, 393, 708, 784, 1119, 1287
Hpy188III	TCNNGA	2 cut(s)	238, 349
Hpy8I	GTNNAC	3 cut(s)	1054, 1167, 1236
HpyAV	CCTTC	6 cut(s)	28, 669, 673, 715, 1301, 1348
HpyCH4III	ACNGT	4 cut(s)	623, 637, 1240, 1375
HpyCH4IV	ACGT	4 cut(s)	26, 276, 1050, 1169
HpyCH4V	TGCA	8 cut(s)	291, 461, 543, 560, 987, 1033, 1092, 1302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	989
HpyF3I	CTNAG	4 cut(s)	707, 783, 825, 1315
HpySE526I	ACGT	4 cut(s)	26, 276, 1050, 1169
Hsp92II	CATG	2 cut(s)	591, 1138
Kzo9I	GATC	1 cut(s)	604
Lsp1109I	GCAGC	1 cut(s)	1110
LweI	GCATC	4 cut(s)	356, 787, 1020, 1417
MaeI	CTAG	3 cut(s)	197, 306, 1185
MaeII	ACGT	4 cut(s)	26, 276, 1050, 1169
MaeIII	GTNAC	5 cut(s)	277, 346, 745, 1255, 1375
MalI	GATC	1 cut(s)	606
MboI	GATC	1 cut(s)	604
MboII	GAAGA	9 cut(s)	31, 43, 97, 337, 353, 592, 1256, 1331, 1425
MhlI	GDGCHC	1 cut(s)	54
MlyI	GAGTC	1 cut(s)	1252
MmeI	TCCRAC	1 cut(s)	572
MroXI	GAANNNNTTC	1 cut(s)	38
MseI	TTAA	3 cut(s)	267, 870, 975
MslI	CAYNNNNRTG	1 cut(s)	1019
MspI	CCGG	2 cut(s)	371, 451
MspR9I	CCNGG	2 cut(s)	371, 452
MwoI	GCNNNNNNNGC	1 cut(s)	989
NciI	CCSGG	2 cut(s)	371, 452
NdeII	GATC	1 cut(s)	604
NheI	GCTAGC	1 cut(s)	1184
NlaIII	CATG	2 cut(s)	591, 1138
NlaIV	GGNNCC	1 cut(s)	405
NmeAIII	GCCGAG	1 cut(s)	106
NmuCI	GTSAC	4 cut(s)	346, 745, 1255, 1375
NspV	TTCGAA	1 cut(s)	628
PdmI	GAANNNNTTC	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	584
PkrI	GCNGC	1 cut(s)	1125
Ple19I	CGATCG	1 cut(s)	607
PleI	GAGTC	1 cut(s)	1252
PpsI	GAGTC	1 cut(s)	1252
Ppu21I	YACGTR	1 cut(s)	1170
PpuMI	RGGWCCY	1 cut(s)	537
PshBI	ATTAAT	2 cut(s)	870, 975
PsiI	TTATAA	1 cut(s)	738
Psp1406I	AACGTT	1 cut(s)	26
Psp5II	RGGWCCY	1 cut(s)	537
PspFI	CCCAGC	1 cut(s)	425
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	2 cut(s)	404, 537
PspPPI	RGGWCCY	1 cut(s)	537
PvuI	CGATCG	1 cut(s)	607
RsaI	GTAC	4 cut(s)	333, 945, 1088, 1172
RsaNI	GTAC	4 cut(s)	332, 944, 1087, 1171
RseI	CAYNNNNRTG	1 cut(s)	1019
SaqAI	TTAA	3 cut(s)	267, 870, 975
SatI	GCNGC	1 cut(s)	1124
Sau3AI	GATC	1 cut(s)	604
Sau96I	GGNCC	2 cut(s)	404, 537
SchI	GAGTC	1 cut(s)	1252
ScrFI	CCNGG	2 cut(s)	371, 452
SduI	GDGCHC	1 cut(s)	54
SfaNI	GCATC	4 cut(s)	356, 787, 1020, 1417
SfcI	CTRYAG	1 cut(s)	1179
SfuI	TTCGAA	1 cut(s)	628
SinI	GGWCC	1 cut(s)	537
SmiMI	CAYNNNNRTG	1 cut(s)	1019
SnaBI	TACGTA	1 cut(s)	1170
SpeI	ACTAGT	1 cut(s)	196
SsiI	CCGC	6 cut(s)	45, 78, 887, 1010, 1126, 1188
SspMI	CTAG	3 cut(s)	197, 306, 1185
StyD4I	CCNGG	2 cut(s)	369, 450
TaaI	ACNGT	4 cut(s)	623, 637, 1240, 1375
TaiI	ACGT	4 cut(s)	29, 279, 1053, 1172
TaqI	TCGA	7 cut(s)	65, 364, 577, 603, 607, 628, 863
TatI	WGTACW	1 cut(s)	331
TfiI	GAWTC	1 cut(s)	584
Tru1I	TTAA	3 cut(s)	267, 870, 975
Tru9I	TTAA	3 cut(s)	267, 870, 975
TscAI	CASTG	2 cut(s)	1245, 1378
TseFI	GTSAC	4 cut(s)	346, 745, 1255, 1375
TseI	GCWGC	1 cut(s)	1123
Tsp45I	GTSAC	4 cut(s)	346, 745, 1255, 1375
TspDTI	ATGAA	7 cut(s)	49, 338, 431, 576, 1058, 1125, 1361
TspRI	CASTG	2 cut(s)	1245, 1378
VpaK11BI	GGWCC	1 cut(s)	537
VspI	ATTAAT	2 cut(s)	870, 975
XagI	CCTNNNNNAGG	1 cut(s)	828
XapI	RAATTY	2 cut(s)	311, 419
XmnI	GAANNNNTTC	1 cut(s)	38
XspI	CTAG	3 cut(s)	197, 306, 1185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.