Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8368425.1

Orthogroup ID

OG0017068

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 642

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8368425.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atgtcctcccagagcaccctgaaaaaactgatcccctcagacgccaccatgatatcaaaccaacaagtcgctcaacaaatcgctaaaaccctagtggaatcaggccttcaacacctcaaaacctcctcatctctgctctccaatctcaaccccaacataacccacctcgtcctctcagacccaatcctcccacctcaatcttgcttgaccttattcaacttcctcagaagaaacccgtctctcaaatcccacagacccaatctccaagcccatgtaaccctcttttgcaggctccaccaagctaaaagattcgcccacatgaagaatgtggtgaatgctatagtgaacaacggtcgtctccgatgccccgtttccggaatcgtttctttgatcgagaatggttcttatgcgcctggctcggttgagaaactctgggatatgctattcagggtttatgcggacaaccaaatgtttgaagaagccattggggtttttgattatgtgtacaagaatgggcttgagattgaagaaaggtcctgctttgtgcttttgctcgcattgaagaagtgttatcaagtggacaagtgtttaagtttctttgatctaatgctcgaaaagggtgttcggatcacg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

211

Amino Acids

23.81

Weight (kDa)

9.18

Isoelectric Point (pI)

51.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32630
fragaria_vesca	FvH4_6g16190
malus_domestica	MD04G1094800.v1.1
prunus_persica	Prupe.6G234000_v2.0.a1
pyrus_communis	pycom04g08980
rosa_chinensis	RchiOBHm_Chr3g0470041
rosa_laevigata	RLG00000024301
rosa_multiflora	Rmu_co8368425.1_g000001 Rmu_sc0017440.1_g000003
rosa_roxburghii	Rroxscaffold_6G00411260
rosa_rugosa	Rorug03G0106300.1
rosa_samantha	Rh3CG170300
rosa_wichuraiana	Rw3G014650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	374
AciI	CCGC	1 cut(s)	458
AclWI	GGATC	1 cut(s)	25
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	1 cut(s)	506
AfiI	CCNNNNNNNGG	1 cut(s)	374
AgsI	TTSAA	5 cut(s)	110, 217, 476, 527, 562
AjnI	CCWGG	1 cut(s)	412
AjuI	GAANNNNNNNTTGG	2 cut(s)	468, 500
AluBI	AGCT	1 cut(s)	302
AluI	AGCT	1 cut(s)	302
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	2 cut(s)	243, 362
AlwI	GGATC	1 cut(s)	25
Aor13HI	TCCGGA	1 cut(s)	374
AoxI	GGCC	1 cut(s)	103
Asp700I	GAANNNNTTC	1 cut(s)	382
AspLEI	GCGC	1 cut(s)	412
AspS9I	GGNCC	1 cut(s)	534
AsuHPI	GGTGA	1 cut(s)	343
AvaII	GGWCC	1 cut(s)	534
Bbv12I	GWGCWC	1 cut(s)	17
BciT130I	CCWGG	1 cut(s)	414
BcoDI	GTCTC	2 cut(s)	243, 362
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	1 cut(s)	339
Bme1390I	CCNGG	1 cut(s)	414
Bme18I	GGWCC	1 cut(s)	534
BmgT120I	GGNCC	1 cut(s)	534
BmiI	GGNNCC	1 cut(s)	293
BmrFI	CCNGG	1 cut(s)	414
BmsI	GCATC	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	539
BsaHI	GRCGYC	1 cut(s)	42
BsaWI	WCCGGW	1 cut(s)	374
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
BseAI	TCCGGA	1 cut(s)	374
BseBI	CCWGG	1 cut(s)	414
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMII	CTCAG	3 cut(s)	51, 189, 238
BseRI	GAGGAG	1 cut(s)	115
Bsh1285I	CGRYCG	1 cut(s)	355
BshFI	GGCC	1 cut(s)	105
BsiEI	CGRYCG	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	375
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmAI	GTCTC	2 cut(s)	243, 362
BsmBI	CGTCTC	2 cut(s)	243, 362
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp13I	TCCGGA	1 cut(s)	374
Bsp1407I	TGTACA	1 cut(s)	504
Bsp143I	GATC	4 cut(s)	30, 390, 601, 627
BspACI	CCGC	1 cut(s)	458
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	3 cut(s)	50, 188, 237
BspEI	TCCGGA	1 cut(s)	374
BspLI	GGNNCC	1 cut(s)	293
BspPI	GGATC	1 cut(s)	25
BsrGI	TGTACA	1 cut(s)	504
BssMI	GATC	4 cut(s)	30, 390, 601, 627
BssNI	GRCGYC	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	1 cut(s)	353
BstACI	GRCGYC	1 cut(s)	42
BstAUI	TGTACA	1 cut(s)	504
BstC8I	GCNNGC	2 cut(s)	290, 555
BstDEI	CTNAG	3 cut(s)	37, 175, 224
BstHHI	GCGC	1 cut(s)	412
BstKTI	GATC	4 cut(s)	33, 393, 604, 630
BstMAI	GTCTC	2 cut(s)	243, 362
BstMBI	GATC	4 cut(s)	30, 390, 601, 627
BstMCI	CGRYCG	1 cut(s)	355
BstNI	CCWGG	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	412
BstSFI	CTRYAG	1 cut(s)	339
BsuRI	GGCC	1 cut(s)	105
Cac8I	GCNNGC	2 cut(s)	290, 555
CfoI	GCGC	1 cut(s)	412
Cfr13I	GGNCC	1 cut(s)	534
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	505
CviAII	CATG	3 cut(s)	49, 272, 319
CviJI	RGCY	7 cut(s)	105, 269, 292, 302, 417, 482, 517
CviKI_1	RGCY	7 cut(s)	105, 269, 292, 302, 417, 482, 517
CviQI	GTAC	1 cut(s)	505
DdeI	CTNAG	3 cut(s)	37, 175, 224
DpnI	GATC	4 cut(s)	32, 392, 603, 629
DpnII	GATC	4 cut(s)	30, 390, 601, 627
Eco147I	AGGCCT	1 cut(s)	105
Eco32I	GATATC	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	534
EcoO109I	RGGNCCY	1 cut(s)	534
EcoRII	CCWGG	1 cut(s)	412
EcoRV	GATATC	1 cut(s)	54
Esp3I	CGTCTC	2 cut(s)	243, 362
FaeI	CATG	3 cut(s)	52, 275, 322
FaiI	YATR	9 cut(s)	50, 158, 273, 320, 341, 408, 440, 456, 501
FatI	CATG	3 cut(s)	48, 271, 318
FspBI	CTAG	1 cut(s)	92
GlaI	GCGC	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	1 cut(s)	375
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	1 cut(s)	412
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	3 cut(s)	52, 275, 322
Hin6I	GCGC	1 cut(s)	410
HinP1I	GCGC	1 cut(s)	410
HinfI	GANTC	3 cut(s)	98, 309, 378
HpaII	CCGG	1 cut(s)	375
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	3 cut(s)	346, 505, 580
Hpy188I	TCNGA	5 cut(s)	40, 178, 227, 362, 627
Hpy188III	TCNNGA	2 cut(s)	375, 394
Hpy8I	GTNNAC	3 cut(s)	346, 505, 580
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4V	TGCA	1 cut(s)	288
HpyF3I	CTNAG	3 cut(s)	37, 175, 224
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	52, 275, 322
HspAI	GCGC	1 cut(s)	410
Kpn2I	TCCGGA	1 cut(s)	374
Kzo9I	GATC	4 cut(s)	30, 390, 601, 627
LmnI	GCTCC	1 cut(s)	297
LweI	GCATC	1 cut(s)	353
MaeI	CTAG	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	4 cut(s)	32, 392, 603, 629
MboI	GATC	4 cut(s)	30, 390, 601, 627
MboII	GAAGA	5 cut(s)	240, 334, 488, 539, 574
MhlI	GDGCHC	1 cut(s)	17
MroI	TCCGGA	1 cut(s)	374
MroXI	GAANNNNTTC	1 cut(s)	382
MseI	TTAA	1 cut(s)	590
MspI	CCGG	1 cut(s)	375
MspR9I	CCNGG	1 cut(s)	414
Mva1269I	GAATGC	1 cut(s)	340
MvaI	CCWGG	1 cut(s)	414
NdeII	GATC	4 cut(s)	30, 390, 601, 627
NlaIII	CATG	3 cut(s)	52, 275, 322
NlaIV	GGNNCC	1 cut(s)	293
PceI	AGGCCT	1 cut(s)	105
PctI	GAATGC	1 cut(s)	340
PdmI	GAANNNNTTC	1 cut(s)	382
PfeI	GAWTC	3 cut(s)	98, 309, 378
PpuMI	RGGWCCY	1 cut(s)	534
Psp5II	RGGWCCY	1 cut(s)	534
Psp6I	CCWGG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	1 cut(s)	293
PspPI	GGNCC	1 cut(s)	534
PspPPI	RGGWCCY	1 cut(s)	534
RsaI	GTAC	1 cut(s)	506
RsaNI	GTAC	1 cut(s)	505
SaqAI	TTAA	1 cut(s)	590
Sau3AI	GATC	4 cut(s)	30, 390, 601, 627
Sau96I	GGNCC	1 cut(s)	534
ScrFI	CCNGG	1 cut(s)	414
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	7 cut(s)	117, 125, 168, 196, 212, 304, 536
SfaNI	GCATC	1 cut(s)	353
SfcI	CTRYAG	1 cut(s)	339
SinI	GGWCC	1 cut(s)	534
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
SseBI	AGGCCT	1 cut(s)	105
SsiI	CCGC	1 cut(s)	458
SspMI	CTAG	1 cut(s)	92
StuI	AGGCCT	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	412
TaaI	ACNGT	1 cut(s)	353
TaqI	TCGA	2 cut(s)	393, 612
TatI	WGTACW	1 cut(s)	504
TfiI	GAWTC	3 cut(s)	98, 309, 378
Tru1I	TTAA	1 cut(s)	590
Tru9I	TTAA	1 cut(s)	590
TspDTI	ATGAA	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	534
XmnI	GAANNNNTTC	1 cut(s)	382
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.