Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017440.1

Orthogroup ID

OG0017068

Physical Location & Seq

Genomic Coordinates Forward (+)

13831 .. 15687

Gene Structure 1857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017440.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1857 bp

atgtcctcccagagcaccctgaaaaaactgatcccctcagacgccaccatgatatcaaaccaacaagtcgctcaacaaatcgccaaaaccctagtggaatcaggccttcaacacctcaaaacctcctcatctctgctctccaatctcaaccccaacataacccacctcgtcctctcagacccaatcctcccacctcaatcttgcttgaccttattcaacttcctcagaagaaacccgtctctcaaatcccacagacccaatctccaagcccatgtaaccctcttttgcaggctccaccaagctaaaagattcgcccaaatgaagaatgtggtgaatgctatagtgaacaacggtcgtctccgatgccccgtttccggaatcgtttctttgatcgagaatggttcttatgcgcctggctcggttgagaaactctgggatatgctattcagggtttatgcggacaaccaaatgtttgaagaagccattggggtttttgattatgtgtacaagaatgggcttgagattgaagaaaggtcctgctttgtgcttttgctcgcattgaagaagtgttatcaagtggacaagtgtttaagtttctttgatctaatgctcgaaaagggtgttcggatcacggtttattccatgacattagtgatcaatgagctttgtaagagaggagaggtggaaaaggctaagacattgatgggtgaaatgggcgggagagggattgaggctaatgtttatacttataacacgattacgaaagcctacattgaaatgaaggatttcggtggggtcaatgaggccttgagcttgatgaagatgaatcatgtggagtataatgtggcaacatacaacctcttgattgattggtatgggagttgtgagaagattggagatgcagagaagctgtttgatgaaatgcgtgagagagggatagagccggatgtgtacctttacacttcgatgattaactggaattgtagagcggggaaaatgaaaagggcattgtttctgttcgatgaaatgactgaaagaaggcttgttccgaatgatcacacttacggcgcgttgattaatggtgcttgtaaggcagggcagatggagatggcagacattttggtgaaagagatgcaaggtaaaggaattgccatcaaccgtgttgtgtataatacactgattgatgggtactgcagaaaagggttgatagatgaagctcagaggttccaggatgtaatggagaagaaagggttgaaggctgatgtgtatacttactgcactatagctaggggattgtttaaattgaataggaatgaggacgcaaagaggtccttgttaactatggcagaaagaggtgtggctccaaactcagtgtgcttcactactctgatagacatatattgcaaggaaggagacttggtcgaagcaaagcgggtatttcaggagatggaaagcaaaggagagaggcctaataacgtaacatgcaatgctctaattgatgggcataccaagaaaggtaaactgaaggaagcgcataagataaaagaggagatggaagacaagggtttgatggcagattcgtatacatattcatcgcttatacatggtgaatgtattgctggcaacgtggatgcggcactgacattgtttcatgaaatgtcccagaggggtttaactcgaaacgttgtcacatacacagtaattatttcgggtttgtctaaggtggggagaaaagaagaagctttcaaattgtacgatgacatgaaaaaagcaagcatcatacctgatgacagggtatataattcacttgtacaaggcctttatacagacaagtctagctctatgacagatgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

618

Amino Acids

69.8

Weight (kDa)

8.0

Isoelectric Point (pI)

32.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32630
fragaria_vesca	FvH4_6g16190
malus_domestica	MD04G1094800.v1.1
prunus_persica	Prupe.6G234000_v2.0.a1
pyrus_communis	pycom04g08980
rosa_chinensis	RchiOBHm_Chr3g0470041
rosa_laevigata	RLG00000024301
rosa_multiflora	Rmu_co8368425.1_g000001 Rmu_sc0017440.1_g000003
rosa_roxburghii	Rroxscaffold_6G00411260
rosa_rugosa	Rorug03G0106300.1
rosa_samantha	Rh3CG170300
rosa_wichuraiana	Rw3G014650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	750
AccBSI	CCGCTC	1 cut(s)	989
AccI	GTMKAC	2 cut(s)	1268, 1583
AccII	CGCG	1 cut(s)	1070
AccIII	TCCGGA	1 cut(s)	374
AciI	CCGC	5 cut(s)	458, 717, 989, 1432, 1634
AclI	AACGTT	1 cut(s)	1683
AclWI	GGATC	2 cut(s)	25, 635
AcuI	CTGAAG	1 cut(s)	1544
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	5 cut(s)	506, 953, 1190, 1754, 1812
AfiI	CCNNNNNNNGG	1 cut(s)	374
AgsI	TTSAA	9 cut(s)	110, 217, 476, 527, 562, 776, 1255, 1306, 1747
AjnI	CCWGG	2 cut(s)	412, 1227
AjuI	GAANNNNNNNTTGG	2 cut(s)	468, 500
AluBI	AGCT	8 cut(s)	302, 664, 813, 910, 1217, 1286, 1742, 1839
AluI	AGCT	8 cut(s)	302, 664, 813, 910, 1217, 1286, 1742, 1839
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	3 cut(s)	243, 362, 1407
AlwI	GGATC	2 cut(s)	25, 635
Aor13HI	TCCGGA	1 cut(s)	374
AoxI	GGCC	4 cut(s)	103, 804, 1466, 1816
AseI	ATTAAT	1 cut(s)	1077
Asp700I	GAANNNNTTC	2 cut(s)	382, 785
AspLEI	GCGC	3 cut(s)	412, 1070, 1534
AspS9I	GGNCC	2 cut(s)	534, 1329
AsuHPI	GGTGA	4 cut(s)	343, 719, 1135, 1619
AvaII	GGWCC	2 cut(s)	534, 1329
BbsI	GAAGAC	1 cut(s)	1563
Bbv12I	GWGCWC	1 cut(s)	17
BccI	CCATC	9 cut(s)	697, 1096, 1102, 1160, 1178, 1441, 1493, 1546, 1564
BceAI	ACGGC	1 cut(s)	1081
BciT130I	CCWGG	2 cut(s)	414, 1229
BclI	TGATCA	2 cut(s)	654, 1054
BcoDI	GTCTC	3 cut(s)	243, 362, 1407
BfaI	CTAG	3 cut(s)	92, 1287, 1836
BfmI	CTRYAG	3 cut(s)	339, 1192, 1281
BisI	GCNGC	1 cut(s)	1635
BlsI	GCNGC	1 cut(s)	1636
Bme1390I	CCNGG	2 cut(s)	414, 1229
Bme18I	GGWCC	2 cut(s)	534, 1329
BmgT120I	GGNCC	2 cut(s)	534, 1329
BmiI	GGNNCC	3 cut(s)	293, 1226, 1362
BmrFI	CCNGG	2 cut(s)	414, 1229
BmsI	GCATC	5 cut(s)	353, 889, 1122, 1621, 1785
BpiI	GAAGAC	1 cut(s)	1563
BpuEI	CTTGAG	2 cut(s)	539, 829
BsaHI	GRCGYC	1 cut(s)	42
BsaWI	WCCGGW	1 cut(s)	374
BsaXI	ACNNNNNCTCC	4 cut(s)	246, 276, 1404, 1434
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse1I	ACTGG	1 cut(s)	980
Bse3DI	GCAATG	1 cut(s)	1492
BseAI	TCCGGA	1 cut(s)	374
BseBI	CCWGG	2 cut(s)	414, 1229
BseGI	GGATG	3 cut(s)	952, 1237, 1636
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMI	GCAATG	1 cut(s)	1492
BseMII	CTCAG	5 cut(s)	51, 189, 238, 1232, 1383
BseNI	ACTGG	1 cut(s)	980
BseRI	GAGGAG	3 cut(s)	115, 690, 1562
BsgI	GTGCAG	1 cut(s)	1261
Bsh1236I	CGCG	1 cut(s)	1070
Bsh1285I	CGRYCG	1 cut(s)	355
BshFI	GGCC	4 cut(s)	105, 806, 1468, 1818
BsiEI	CGRYCG	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	2 cut(s)	375, 944
BslFI	GGGAC	1 cut(s)	1645
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmAI	GTCTC	3 cut(s)	243, 362, 1407
BsmBI	CGTCTC	2 cut(s)	243, 362
BsmFI	GGGAC	1 cut(s)	1645
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	4 cut(s)	105, 806, 1468, 1818
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp13I	TCCGGA	1 cut(s)	374
Bsp1407I	TGTACA	2 cut(s)	504, 1810
Bsp143I	GATC	6 cut(s)	30, 390, 601, 627, 654, 1054
BspACI	CCGC	5 cut(s)	458, 717, 989, 1432, 1634
BspANI	GGCC	4 cut(s)	105, 806, 1468, 1818
BspCNI	CTCAG	5 cut(s)	50, 188, 237, 1231, 1382
BspEI	TCCGGA	1 cut(s)	374
BspFNI	CGCG	1 cut(s)	1070
BspHI	TCATGA	1 cut(s)	1651
BspLI	GGNNCC	3 cut(s)	293, 1226, 1362
BspMAI	CTGCAG	1 cut(s)	1196
BspPI	GGATC	2 cut(s)	25, 635
BsrBI	CCGCTC	1 cut(s)	989
BsrDI	GCAATG	1 cut(s)	1492
BsrGI	TGTACA	2 cut(s)	504, 1810
BsrI	ACTGG	1 cut(s)	980
BssMI	GATC	6 cut(s)	30, 390, 601, 627, 654, 1054
BssNAI	GTATAC	2 cut(s)	1269, 1584
BssNI	GRCGYC	1 cut(s)	42
Bst1107I	GTATAC	2 cut(s)	1269, 1584
Bst2UI	CCWGG	2 cut(s)	414, 1229
Bst4CI	ACNGT	4 cut(s)	353, 634, 1160, 1699
BstACI	GRCGYC	1 cut(s)	42
BstAUI	TGTACA	2 cut(s)	504, 1810
BstC8I	GCNNGC	4 cut(s)	290, 555, 1621, 1774
BstDEI	CTNAG	7 cut(s)	37, 175, 224, 693, 1218, 1369, 1719
BstF5I	GGATG	3 cut(s)	952, 1237, 1636
BstFNI	CGCG	1 cut(s)	1070
BstHHI	GCGC	3 cut(s)	412, 1070, 1534
BstKTI	GATC	6 cut(s)	33, 393, 604, 630, 657, 1057
BstMAI	GTCTC	3 cut(s)	243, 362, 1407
BstMBI	GATC	6 cut(s)	30, 390, 601, 627, 654, 1054
BstMCI	CGRYCG	1 cut(s)	355
BstMWI	GCNNNNNNNGC	1 cut(s)	1091
BstNI	CCWGG	2 cut(s)	414, 1229
BstNSI	RCATGY	1 cut(s)	1485
BstSCI	CCNGG	2 cut(s)	412, 1227
BstSFI	CTRYAG	3 cut(s)	339, 1192, 1281
BstUI	CGCG	1 cut(s)	1070
BstV2I	GAAGAC	1 cut(s)	1563
BstZ17I	GTATAC	2 cut(s)	1269, 1584
BsuRI	GGCC	4 cut(s)	105, 806, 1468, 1818
BtgZI	GCGATG	1 cut(s)	1578
BtsCI	GGATG	3 cut(s)	952, 1237, 1636
BtsIMutI	CAGTG	3 cut(s)	1175, 1377, 1637
Cac8I	GCNNGC	4 cut(s)	290, 555, 1621, 1774
CciI	TCATGA	1 cut(s)	1651
CfoI	GCGC	3 cut(s)	412, 1070, 1534
Cfr13I	GGNCC	2 cut(s)	534, 1329
CseI	GACGC	2 cut(s)	50, 1328
Csp6I	GTAC	5 cut(s)	505, 952, 1189, 1753, 1811
CviAII	CATG	8 cut(s)	49, 272, 643, 830, 1482, 1604, 1652, 1762
CviQI	GTAC	5 cut(s)	505, 952, 1189, 1753, 1811
DdeI	CTNAG	7 cut(s)	37, 175, 224, 693, 1218, 1369, 1719
DpnI	GATC	6 cut(s)	32, 392, 603, 629, 656, 1056
DpnII	GATC	6 cut(s)	30, 390, 601, 627, 654, 1054
DraI	TTTAAA	1 cut(s)	1300
Eco147I	AGGCCT	4 cut(s)	105, 806, 1468, 1818
Eco32I	GATATC	1 cut(s)	54
Eco47I	GGWCC	2 cut(s)	534, 1329
Eco57I	CTGAAG	1 cut(s)	1544
EcoO109I	RGGNCCY	2 cut(s)	534, 1329
EcoRII	CCWGG	2 cut(s)	412, 1227
EcoRV	GATATC	1 cut(s)	54
Esp3I	CGTCTC	2 cut(s)	243, 362
FaeI	CATG	8 cut(s)	52, 275, 646, 833, 1485, 1607, 1655, 1765
FalI	AAGNNNNNCTT	2 cut(s)	1316, 1348
FaqI	GGGAC	1 cut(s)	1645
FatI	CATG	8 cut(s)	48, 271, 642, 829, 1481, 1603, 1651, 1761
FauI	CCCGC	3 cut(s)	710, 982, 1425
FbaI	TGATCA	2 cut(s)	654, 1054
FblI	GTMKAC	2 cut(s)	1268, 1583
Fnu4HI	GCNGC	1 cut(s)	1635
FokI	GGATG	3 cut(s)	959, 1244, 1643
Fsp4HI	GCNGC	1 cut(s)	1635
FspBI	CTAG	3 cut(s)	92, 1287, 1836
GlaI	GCGC	3 cut(s)	411, 1069, 1533
GluI	GCNGC	1 cut(s)	1635
HaeIII	GGCC	4 cut(s)	105, 806, 1468, 1818
HapII	CCGG	2 cut(s)	375, 944
HgaI	GACGC	2 cut(s)	50, 1328
HhaI	GCGC	3 cut(s)	412, 1070, 1534
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	8 cut(s)	52, 275, 646, 833, 1485, 1607, 1655, 1765
Hin6I	GCGC	3 cut(s)	410, 1068, 1532
HinP1I	GCGC	3 cut(s)	410, 1068, 1532
HincII	GTYRAC	1 cut(s)	1338
HindII	GTYRAC	1 cut(s)	1338
HindIII	AAGCTT	1 cut(s)	1740
HinfI	GANTC	5 cut(s)	98, 309, 378, 826, 1577
HpaI	GTTAAC	1 cut(s)	1338
HpaII	CCGG	2 cut(s)	375, 944
HphI	GGTGA	4 cut(s)	343, 719, 1135, 1619
Hpy166II	GTNNAC	8 cut(s)	346, 505, 580, 952, 1269, 1338, 1520, 1584
Hpy188I	TCNGA	8 cut(s)	40, 178, 227, 362, 627, 1050, 1221, 1389
Hpy188III	TCNNGA	5 cut(s)	375, 394, 862, 1442, 1652
Hpy8I	GTNNAC	8 cut(s)	346, 505, 580, 952, 1269, 1338, 1520, 1584
HpyAV	CCTTC	6 cut(s)	116, 775, 1032, 1249, 1403, 1519
HpyCH4III	ACNGT	4 cut(s)	353, 634, 1160, 1699
HpyCH4IV	ACGT	3 cut(s)	1476, 1626, 1683
HpyCH4V	TGCA	7 cut(s)	288, 902, 1135, 1194, 1278, 1404, 1485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1091
HpyF3I	CTNAG	7 cut(s)	37, 175, 224, 693, 1218, 1369, 1719
HpySE526I	ACGT	3 cut(s)	1476, 1626, 1683
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	8 cut(s)	52, 275, 646, 833, 1485, 1607, 1655, 1765
HspAI	GCGC	3 cut(s)	410, 1068, 1532
Kpn2I	TCCGGA	1 cut(s)	374
Ksp22I	TGATCA	2 cut(s)	654, 1054
KspAI	GTTAAC	1 cut(s)	1338
Kzo9I	GATC	6 cut(s)	30, 390, 601, 627, 654, 1054
LmnI	GCTCC	2 cut(s)	297, 1366
LweI	GCATC	5 cut(s)	353, 889, 1122, 1621, 1785
MaeI	CTAG	3 cut(s)	92, 1287, 1836
MaeII	ACGT	3 cut(s)	1476, 1626, 1683
MaeIII	GTNAC	3 cut(s)	274, 1477, 1687
MalI	GATC	6 cut(s)	32, 392, 603, 629, 656, 1056
MbiI	CCGCTC	1 cut(s)	989
MboI	GATC	6 cut(s)	30, 390, 601, 627, 654, 1054
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	7 cut(s)	979, 1146, 1301, 1494, 1701, 1748, 1801
MroI	TCCGGA	1 cut(s)	374
MroXI	GAANNNNTTC	2 cut(s)	382, 785
MseI	TTAA	6 cut(s)	590, 972, 1077, 1299, 1337, 1673
MslI	CAYNNNNRTG	3 cut(s)	776, 965, 1121
MspI	CCGG	2 cut(s)	375, 944
MspR9I	CCNGG	2 cut(s)	414, 1229
Mva1269I	GAATGC	1 cut(s)	340
MvaI	CCWGG	2 cut(s)	414, 1229
MvnI	CGCG	1 cut(s)	1070
MwoI	GCNNNNNNNGC	1 cut(s)	1091
NdeII	GATC	6 cut(s)	30, 390, 601, 627, 654, 1054
NlaIII	CATG	8 cut(s)	52, 275, 646, 833, 1485, 1607, 1655, 1765
NlaIV	GGNNCC	3 cut(s)	293, 1226, 1362
NmuCI	GTSAC	1 cut(s)	1687
NspI	RCATGY	1 cut(s)	1485
PagI	TCATGA	1 cut(s)	1651
PceI	AGGCCT	4 cut(s)	105, 806, 1468, 1818
PctI	GAATGC	1 cut(s)	340
PdmI	GAANNNNTTC	2 cut(s)	382, 785
PfeI	GAWTC	5 cut(s)	98, 309, 378, 826, 1577
PflFI	GACNNNGTC	1 cut(s)	1418
PfoI	TCCNGGA	1 cut(s)	1227
PkrI	GCNGC	1 cut(s)	1636
PpuMI	RGGWCCY	2 cut(s)	534, 1329
PshBI	ATTAAT	1 cut(s)	1077
PsiI	TTATAA	1 cut(s)	750
Psp1406I	AACGTT	1 cut(s)	1683
Psp5II	RGGWCCY	2 cut(s)	534, 1329
Psp6I	CCWGG	2 cut(s)	412, 1227
PspGI	CCWGG	2 cut(s)	412, 1227
PspN4I	GGNNCC	3 cut(s)	293, 1226, 1362
PspPI	GGNCC	2 cut(s)	534, 1329
PspPPI	RGGWCCY	2 cut(s)	534, 1329
PstI	CTGCAG	1 cut(s)	1196
PsyI	GACNNNGTC	1 cut(s)	1418
RsaI	GTAC	5 cut(s)	506, 953, 1190, 1754, 1812
RsaNI	GTAC	5 cut(s)	505, 952, 1189, 1753, 1811
RseI	CAYNNNNRTG	3 cut(s)	776, 965, 1121
SaqAI	TTAA	6 cut(s)	590, 972, 1077, 1299, 1337, 1673
SatI	GCNGC	1 cut(s)	1635
Sau3AI	GATC	6 cut(s)	30, 390, 601, 627, 654, 1054
Sau96I	GGNCC	2 cut(s)	534, 1329
ScrFI	CCNGG	2 cut(s)	414, 1229
SduI	GDGCHC	1 cut(s)	17
SfaNI	GCATC	5 cut(s)	353, 889, 1122, 1621, 1785
SfcI	CTRYAG	3 cut(s)	339, 1192, 1281
SinI	GGWCC	2 cut(s)	534, 1329
SmiMI	CAYNNNNRTG	3 cut(s)	776, 965, 1121
SmlI	CTYRAG	2 cut(s)	518, 808
SmoI	CTYRAG	2 cut(s)	518, 808
Sse9I	AATT	7 cut(s)	979, 1146, 1301, 1494, 1701, 1748, 1801
SseBI	AGGCCT	4 cut(s)	105, 806, 1468, 1818
SsiI	CCGC	5 cut(s)	458, 717, 989, 1432, 1634
SspMI	CTAG	3 cut(s)	92, 1287, 1836
StuI	AGGCCT	4 cut(s)	105, 806, 1468, 1818
StyD4I	CCNGG	2 cut(s)	412, 1227
TaaI	ACNGT	4 cut(s)	353, 634, 1160, 1699
TaiI	ACGT	3 cut(s)	1479, 1629, 1686
TaqI	TCGA	6 cut(s)	393, 612, 965, 1020, 1422, 1678
TasI	AATT	7 cut(s)	979, 1146, 1301, 1494, 1701, 1748, 1801
TatI	WGTACW	2 cut(s)	504, 1810
TauI	GCSGC	1 cut(s)	1637
TfiI	GAWTC	5 cut(s)	98, 309, 378, 826, 1577
Tru1I	TTAA	6 cut(s)	590, 972, 1077, 1299, 1337, 1673
Tru9I	TTAA	6 cut(s)	590, 972, 1077, 1299, 1337, 1673
TscAI	CASTG	3 cut(s)	1182, 1377, 1644
TseFI	GTSAC	1 cut(s)	1687
Tsp45I	GTSAC	1 cut(s)	1687
TspRI	CASTG	3 cut(s)	1182, 1377, 1644
Tth111I	GACNNNGTC	1 cut(s)	1418
VpaK11BI	GGWCC	2 cut(s)	534, 1329
VspI	ATTAAT	1 cut(s)	1077
XceI	RCATGY	1 cut(s)	1485
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XmiI	GTMKAC	2 cut(s)	1268, 1583
XmnI	GAANNNNTTC	2 cut(s)	382, 785
XspI	CTAG	3 cut(s)	92, 1287, 1836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.