MD04G1125200.v1.1

Oligosaccaryltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0019145
Physical Location & Seq
Forward (+)
21174235 .. 21175968
1734 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1125200.v1.1.491

Sequence Viewer

Length: 264 bp
ATGCACGATACGACGTCGTTGCCCAAACTGCAATATATCAGCGCGTTCCTTTTCCTCAATGCACAACACAAACAGCACCTCTTCACACTCTCGGAAGGCTTCGTCACTGACCGAGTAATCGACTCCAAAAACTATCGGTTTTGTTTATTTGTGATGGATGATCAGGACCTGGGCTTCTTTGCCAATTTTCTCGGCATCTTCATATTTCTACTGGTAATAGCGTATCATTTTGTGATGGCCGACCCAAAATATGAAGGCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ost4

Protein Analysis

88

Amino Acids

10.18

Weight (kDa)

5.64

Isoelectric Point (pI)

25.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ost4 PF10215 53 - 83 1.6e-12 Oligosaccaryltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019145)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09455 AT3G09455 AT5G02502
malus_domestica MD04G1125200.v1.1
prunus_persica Prupe.6G252200_v2.0.a1
rosa_laevigata RLG00000024535
rosa_samantha Rh3BG153800 Rh3DG154900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 17
AccII CGCG 1 cut(s) 44
AcoI YGGCCR 1 cut(s) 237
AcyI GRCGYC 1 cut(s) 14
AjnI CCWGG 1 cut(s) 168
AlwNI CAGNNNCTG 1 cut(s) 169
AoxI GGCC 1 cut(s) 237
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 1 cut(s) 166
AvaII GGWCC 1 cut(s) 166
BccI CCATC 2 cut(s) 148, 229
BcgI CGANNNNNNTGC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 170
BclI TGATCA 1 cut(s) 160
Bme1390I CCNGG 1 cut(s) 170
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 166
BmrFI CCNGG 1 cut(s) 170
BmsI GCATC 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 216
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 1 cut(s) 169
BseGI GGATG 1 cut(s) 163
BseNI ACTGG 1 cut(s) 216
Bsh1236I CGCG 1 cut(s) 44
BshFI GGCC 1 cut(s) 239
BsnI GGCC 1 cut(s) 239
Bsp143I GATC 1 cut(s) 160
BspANI GGCC 1 cut(s) 239
BspFNI CGCG 1 cut(s) 44
BsrI ACTGG 1 cut(s) 216
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 1 cut(s) 160
BssNI GRCGYC 1 cut(s) 14
Bst2UI CCWGG 1 cut(s) 170
Bst6I CTCTTC 1 cut(s) 86
BstACI GRCGYC 1 cut(s) 14
BstF5I GGATG 1 cut(s) 163
BstFNI CGCG 1 cut(s) 44
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 28
BstNI CCWGG 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 168
BstUI CGCG 1 cut(s) 44
BsuRI GGCC 1 cut(s) 239
BtsCI GGATG 1 cut(s) 163
BtsIMutI CAGTG 1 cut(s) 105
CaiI CAGNNNCTG 1 cut(s) 169
CfoI GCGC 1 cut(s) 44
Cfr13I GGNCC 1 cut(s) 166
CviJI RGCY 3 cut(s) 99, 174, 239
CviKI_1 RGCY 3 cut(s) 99, 174, 239
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
EaeI YGGCCR 1 cut(s) 237
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 168
FaiI YATR 3 cut(s) 36, 203, 252
FbaI TGATCA 1 cut(s) 160
FokI GGATG 1 cut(s) 170
GlaI GCGC 1 cut(s) 43
HaeIII GGCC 1 cut(s) 239
HhaI GCGC 1 cut(s) 44
Hin1I GRCGYC 1 cut(s) 14
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HinfI GANTC 1 cut(s) 122
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 1 cut(s) 164
Hpy99I CGWCG 2 cut(s) 16, 19
HpyAV CCTTC 2 cut(s) 89, 248
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 3 cut(s) 4, 31, 62
HpyF10VI GCNNNNNNNGC 1 cut(s) 28
HpySE526I ACGT 1 cut(s) 14
Hsp92I GRCGYC 1 cut(s) 14
HspAI GCGC 1 cut(s) 42
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 1 cut(s) 160
LpnPI CCDG 4 cut(s) 149, 155, 182, 197
LweI GCATC 1 cut(s) 204
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 103
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 2 cut(s) 73, 190
MluCI AATT 1 cut(s) 184
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 2 cut(s) 65, 89
MspR9I CCNGG 1 cut(s) 170
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 1 cut(s) 28
NdeII GATC 1 cut(s) 160
NmeAIII GCCGAG 1 cut(s) 171
NmuCI GTSAC 1 cut(s) 103
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PpuMI RGGWCCY 1 cut(s) 166
Psp5II RGGWCCY 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspPI GGNCC 1 cut(s) 166
PspPPI RGGWCCY 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 169
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 1 cut(s) 166
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 1 cut(s) 170
SetI ASST 3 cut(s) 17, 81, 171
SfaNI GCATC 1 cut(s) 204
SgeI CNNG 9 cut(s) 17, 55, 103, 125, 176, 181, 182, 203, 224
SinI GGWCC 1 cut(s) 166
Sse9I AATT 1 cut(s) 184
StyD4I CCNGG 1 cut(s) 168
TaiI ACGT 1 cut(s) 17
TaqI TCGA 1 cut(s) 120
TaqII GACCGA 1 cut(s) 126
TasI AATT 1 cut(s) 184
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 190
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 166
ZraI GACGTC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.