MD04G1208100.v1.1

Basic 7S

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
29312450 .. 29313793
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1208100.v1.1.491

Sequence Viewer

Length: 1344 bp
ATGGCTTCTTTCCTTCCTAATTTGGTCCTTTTCTTCTCTTGTTTTTCTCTTCTTGCTTTCATATCTGCGGCGACACTCAAAACCCAACCCCAAATCCCCATCAGGCCGAACAAGCTTGTCCTCAGGGTGCAGAAAGATGATGCAACCAATCTTCATGTGGCCCAAATTTACAAAAGAAACCCTCCAGTCCAATTCCCCTTTGTGATTGACCTAAATGGGAGGTTCTTAACAGAAAATTGTGAGAACCAATACTTGTCATTGGGTTACAATGCCCCATTTTGCCACTCGACGCTGTGCGCTAGAGCTAATCCTAATAGCCCGATGACATGCCGCACATGCTCCTCTAGAACCCAAATAGGGTGCCACCCCAACGCGTGTGGGCTGATGACCACAAACCCCGTGACGCGTCAAAGCGCCTTGGGTGAGCTTGCGCAGGATGTCCTAACAATCTCATCAACCCAAGGCTCAGGTCCCGGCCCAATGGTCCAAATCCCTCAATTCCTATTTGCGTGTGCACCTTCCAACATATTGCAAAATGGGTTACCCAAAAACGTTCAAGGTATTGCTGGTCTAGGTCATTCCCCAATTTCCCTACCTTACCAACTAGCCTCCCACTTTGGCTTCCCACCAAAATTCGCTGTGTGCCTTCCTCCTTCATCTGACCGAAGTGGCGTCGTTTTCTTTGGGGAAGGACCTTATTTCATGAAACCGAACATCGACGTGTCGCAGAAGTTGACCTACACCCCACTGATCATAGGCAGGCAAGGAGAGTACTACATAAACGTTCAATCCATCAAAATCAACAATAAGATTGTTCCACTCAACACATCTCTCTTGACATACACACCAGAACAAGGGGTTGGTGGGACAATGATCAGCACCACAACTCCCTACACAATCCTCCAAACCTCAATCTTTAGGGCAGTCACTCAGTTCTACATCAATCAGCTGCAAGGGTTGCCCCAAGTGAAACCCGTGGCGCCATTCGGGGTGTGTTTCGATGCAAAGAGATTCACCGGCAGCAGCACGGCCGCATTTCCTAGCATAGACCTTGTCCTAGACAACAACCAGAACATCATCTGGAGGATATCTGCTCCAAACATTTTCGTCCAGCCACGTCCCTTCATAGGGTGTCTAGGTTTTGTGGACGGCGGGTTGAAGCCTCAGGCTTCGATCGTGATCGGGGCAATGCAGTTGGAGGAAAATCTGCTGCAGTTTGATCTGACGAACTCAAGGTTGGGATTTAGCAATTACTTGCTTCCCAGGACTAGTTGTACCAACTTCAACTTTGGCAAATCCTCCACTGGTGCTGAAGAATCTACTGAGTGCACTGATGAGCCATAA

Protein Analysis

448

Amino Acids

48.77

Weight (kDa)

8.61

Isoelectric Point (pI)

47.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 54 - 229 1.7e-33 Xylanase inhibitor N-terminal
TAXi_C PF14541 257 - 416 5.5e-49 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016359)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 432
AccB1I GGYRCC 2 cut(s) 360, 979
AccII CGCG 2 cut(s) 374, 406
AciI CCGC 4 cut(s) 68, 331, 1032, 1152
AclI AACGTT 2 cut(s) 552, 783
AcoI YGGCCR 1 cut(s) 1029
AcsI RAATTY 2 cut(s) 165, 632
AcuI CTGAAG 1 cut(s) 1332
AcyI GRCGYC 2 cut(s) 672, 980
AfaI GTAC 2 cut(s) 773, 1276
AfiI CCNNNNNNNGG 4 cut(s) 357, 854, 1127, 1128
AflIII ACRYGT 3 cut(s) 372, 404, 720
AgsI TTSAA 4 cut(s) 557, 788, 1159, 1285
AhlI ACTAGT 1 cut(s) 1268
AjiI CACGTC 2 cut(s) 721, 1118
AjnI CCWGG 1 cut(s) 1262
AjuI GAANNNNNNNTTGG 4 cut(s) 843, 875, 1220, 1252
AluBI AGCT 4 cut(s) 115, 305, 427, 949
AluI AGCT 4 cut(s) 115, 305, 427, 949
Alw21I GWGCWC 2 cut(s) 517, 1331
Alw44I GTGCAC 2 cut(s) 513, 1327
AoxI GGCC 4 cut(s) 104, 159, 475, 1029
ApaLI GTGCAC 2 cut(s) 513, 1327
ApeKI GCWGC 4 cut(s) 949, 1020, 1023, 1210
ApoI RAATTY 2 cut(s) 165, 632
AspLEI GCGC 4 cut(s) 299, 416, 433, 982
AspS9I GGNCC 6 cut(s) 25, 160, 470, 476, 484, 692
AsuC2I CCSGG 1 cut(s) 474
AsuHPI GGTGA 2 cut(s) 434, 1006
AvaII GGWCC 4 cut(s) 25, 470, 484, 692
AxyI CCTNAGG 2 cut(s) 122, 1164
BaeGI GKGCMC 2 cut(s) 517, 1331
BanI GGYRCC 2 cut(s) 360, 979
BarI GAAGNNNNNNTAC 2 cut(s) 722, 754
Bbv12I GWGCWC 2 cut(s) 517, 1331
BbvI GCAGC 4 cut(s) 936, 1032, 1035, 1197
BccI CCATC 2 cut(s) 107, 800
BceAI ACGGC 2 cut(s) 1044, 1165
BciT130I CCWGG 1 cut(s) 1264
BclI TGATCA 2 cut(s) 750, 873
BcnI CCSGG 1 cut(s) 474
BcuI ACTAGT 1 cut(s) 1268
BfaI CTAG 8 cut(s) 300, 345, 572, 605, 1041, 1058, 1136, 1269
BfmI CTRYAG 1 cut(s) 1211
BfoI RGCGCY 2 cut(s) 417, 983
BisI GCNGC 7 cut(s) 69, 331, 950, 1021, 1024, 1032, 1211
BlsI GCNGC 7 cut(s) 70, 332, 951, 1022, 1025, 1033, 1212
BmcAI AGTACT 1 cut(s) 773
Bme1390I CCNGG 2 cut(s) 474, 1264
Bme18I GGWCC 4 cut(s) 25, 470, 484, 692
BmgBI CACGTC 2 cut(s) 721, 1118
BmgT120I GGNCC 6 cut(s) 25, 160, 470, 476, 484, 692
BmiI GGNNCC 3 cut(s) 362, 472, 981
BmrFI CCNGG 2 cut(s) 474, 1264
BmsI GCATC 2 cut(s) 130, 991
BpmI CTGGAG 2 cut(s) 168, 1102
Bpu10I CCTNAGC 1 cut(s) 466
BpuEI CTTGAG 1 cut(s) 1216
BpuMI CCSGG 1 cut(s) 474
BsaBI GATNNNNATC 1 cut(s) 1178
BsaHI GRCGYC 2 cut(s) 672, 980
BsaJI CCNNGG 4 cut(s) 417, 460, 975, 1262
BsaXI ACNNNNNCTCC 2 cut(s) 871, 901
Bsc4I CCNNNNNNNGG 4 cut(s) 357, 854, 1127, 1128
Bse118I RCCGGY 1 cut(s) 1016
Bse1I ACTGG 2 cut(s) 185, 1309
Bse21I CCTNAGG 2 cut(s) 122, 1164
Bse3DI GCAATG 1 cut(s) 1194
Bse8I GATNNNNATC 1 cut(s) 1178
BseBI CCWGG 1 cut(s) 1264
BseDI CCNNGG 4 cut(s) 417, 460, 975, 1262
BseGI GGATG 1 cut(s) 442
BseJI GATNNNNATC 1 cut(s) 1178
BseLI CCNNNNNNNGG 4 cut(s) 357, 854, 1127, 1128
BseMI GCAATG 1 cut(s) 1194
BseMII CTCAG 5 cut(s) 136, 480, 944, 1178, 1314
BseNI ACTGG 2 cut(s) 185, 1309
BseRI GAGGAG 1 cut(s) 331
BseSI GKGCMC 2 cut(s) 517, 1331
BseX3I CGGCCG 1 cut(s) 1029
BseXI GCAGC 4 cut(s) 936, 1032, 1035, 1197
BsgI GTGCAG 1 cut(s) 149
Bsh1236I CGCG 2 cut(s) 374, 406
Bsh1285I CGRYCG 2 cut(s) 1032, 1176
BshFI GGCC 4 cut(s) 106, 161, 477, 1031
BshNI GGYRCC 2 cut(s) 360, 979
BsiEI CGRYCG 2 cut(s) 1032, 1176
BsiHKAI GWGCWC 2 cut(s) 517, 1331
BsiSI CCGG 2 cut(s) 474, 1017
BslFI GGGAC 3 cut(s) 456, 880, 1104
BslI CCNNNNNNNGG 4 cut(s) 357, 854, 1127, 1128
BsmFI GGGAC 3 cut(s) 456, 880, 1104
BsnI GGCC 4 cut(s) 106, 161, 477, 1031
Bsp1286I GDGCHC 2 cut(s) 517, 1331
Bsp143I GATC 5 cut(s) 750, 873, 1173, 1179, 1219
BspACI CCGC 4 cut(s) 68, 331, 1032, 1152
BspANI GGCC 4 cut(s) 106, 161, 477, 1031
BspCNI CTCAG 5 cut(s) 135, 479, 943, 1177, 1315
BspFNI CGCG 2 cut(s) 374, 406
BspHI TCATGA 1 cut(s) 702
BspLI GGNNCC 3 cut(s) 362, 472, 981
BspMAI CTGCAG 1 cut(s) 1215
BspT107I GGYRCC 2 cut(s) 360, 979
BsrDI GCAATG 1 cut(s) 1194
BsrFI RCCGGY 1 cut(s) 1016
BsrI ACTGG 2 cut(s) 185, 1309
BssAI RCCGGY 1 cut(s) 1016
BssECI CCNNGG 4 cut(s) 417, 460, 975, 1262
BssMI GATC 5 cut(s) 750, 873, 1173, 1179, 1219
BssNI GRCGYC 2 cut(s) 672, 980
BssT1I CCWWGG 2 cut(s) 417, 460
Bst2UI CCWGG 1 cut(s) 1264
Bst6I CTCTTC 1 cut(s) 54
BstACI GRCGYC 2 cut(s) 672, 980
BstAPI GCANNNNNTGC 1 cut(s) 958
BstC8I GCNNGC 2 cut(s) 429, 761
BstDEI CTNAG 5 cut(s) 122, 466, 930, 1164, 1323
BstDSI CCRYGG 1 cut(s) 975
BstEII GGTNACC 1 cut(s) 540
BstF5I GGATG 1 cut(s) 442
BstFNI CGCG 2 cut(s) 374, 406
BstH2I RGCGCY 2 cut(s) 417, 983
BstHHI GCGC 4 cut(s) 299, 416, 433, 982
BstKTI GATC 5 cut(s) 753, 876, 1176, 1182, 1222
BstMBI GATC 5 cut(s) 750, 873, 1173, 1179, 1219
BstMCI CGRYCG 2 cut(s) 1032, 1176
BstMWI GCNNNNNNNGC 3 cut(s) 112, 336, 958
BstNI CCWGG 1 cut(s) 1264
BstNSI RCATGY 2 cut(s) 330, 339
BstPI GGTNACC 1 cut(s) 540
BstSCI CCNGG 2 cut(s) 472, 1262
BstSFI CTRYAG 1 cut(s) 1211
BstSLI GKGCMC 2 cut(s) 517, 1331
BstUI CGCG 2 cut(s) 374, 406
BstV1I GCAGC 4 cut(s) 936, 1032, 1035, 1197
BstZI CGGCCG 1 cut(s) 1029
Bsu36I CCTNAGG 2 cut(s) 122, 1164
BsuRI GGCC 4 cut(s) 106, 161, 477, 1031
BtgI CCRYGG 1 cut(s) 975
BtrI CACGTC 2 cut(s) 721, 1118
BtsCI GGATG 1 cut(s) 442
BtsIMutI CAGTG 3 cut(s) 746, 1302, 1329
Cac8I GCNNGC 2 cut(s) 429, 761
CciI TCATGA 1 cut(s) 702
CfoI GCGC 4 cut(s) 299, 416, 433, 982
Cfr10I RCCGGY 1 cut(s) 1016
Cfr13I GGNCC 6 cut(s) 25, 160, 470, 476, 484, 692
CseI GACGC 4 cut(s) 298, 395, 412, 661
Csp6I GTAC 2 cut(s) 772, 1275
CspCI CAANNNNNGTGG 2 cut(s) 358, 393
CviAII CATG 4 cut(s) 155, 327, 336, 703
CviQI GTAC 2 cut(s) 772, 1275
DdeI CTNAG 5 cut(s) 122, 466, 930, 1164, 1323
DinI GGCGCC 1 cut(s) 981
DpnI GATC 5 cut(s) 752, 875, 1175, 1181, 1221
DpnII GATC 5 cut(s) 750, 873, 1173, 1179, 1219
EaeI YGGCCR 1 cut(s) 1029
EagI CGGCCG 1 cut(s) 1029
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
EclXI CGGCCG 1 cut(s) 1029
Eco130I CCWWGG 2 cut(s) 417, 460
Eco32I GATATC 1 cut(s) 1089
Eco47I GGWCC 4 cut(s) 25, 470, 484, 692
Eco52I CGGCCG 1 cut(s) 1029
Eco57I CTGAAG 1 cut(s) 1332
Eco81I CCTNAGG 2 cut(s) 122, 1164
Eco91I GGTNACC 1 cut(s) 540
EcoO109I RGGNCCY 2 cut(s) 470, 692
EcoO65I GGTNACC 1 cut(s) 540
EcoRII CCWGG 1 cut(s) 1262
EcoRV GATATC 1 cut(s) 1089
EcoT14I CCWWGG 2 cut(s) 417, 460
EgeI GGCGCC 1 cut(s) 981
EheI GGCGCC 1 cut(s) 981
ErhI CCWWGG 2 cut(s) 417, 460
FaeI CATG 4 cut(s) 158, 330, 339, 706
FaqI GGGAC 3 cut(s) 456, 880, 1104
FatI CATG 4 cut(s) 154, 326, 335, 702
FauI CCCGC 1 cut(s) 1145
FbaI TGATCA 2 cut(s) 750, 873
Fnu4HI GCNGC 7 cut(s) 69, 331, 950, 1021, 1024, 1032, 1211
FokI GGATG 1 cut(s) 449
Fsp4HI GCNGC 7 cut(s) 69, 331, 950, 1021, 1024, 1032, 1211
FspBI CTAG 8 cut(s) 300, 345, 572, 605, 1041, 1058, 1136, 1269
FspI TGCGCA 1 cut(s) 432
GlaI GCGC 4 cut(s) 298, 415, 432, 981
GluI GCNGC 7 cut(s) 69, 331, 950, 1021, 1024, 1032, 1211
GsuI CTGGAG 2 cut(s) 168, 1102
HaeII RGCGCY 2 cut(s) 417, 983
HaeIII GGCC 4 cut(s) 106, 161, 477, 1031
HapII CCGG 2 cut(s) 474, 1017
HgaI GACGC 4 cut(s) 298, 395, 412, 661
HhaI GCGC 4 cut(s) 299, 416, 433, 982
Hin1I GRCGYC 2 cut(s) 672, 980
Hin1II CATG 4 cut(s) 158, 330, 339, 706
Hin6I GCGC 4 cut(s) 297, 414, 431, 980
HinP1I GCGC 4 cut(s) 297, 414, 431, 980
HincII GTYRAC 1 cut(s) 735
HindII GTYRAC 1 cut(s) 735
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 2 cut(s) 1011, 1316
HpaII CCGG 2 cut(s) 474, 1017
HphI GGTGA 2 cut(s) 434, 1006
Hpy166II GTNNAC 4 cut(s) 515, 735, 1147, 1329
Hpy188I TCNGA 2 cut(s) 661, 1224
Hpy188III TCNNGA 5 cut(s) 345, 703, 835, 1081, 1177
Hpy8I GTNNAC 4 cut(s) 515, 735, 1147, 1329
Hpy99I CGWCG 3 cut(s) 292, 677, 722
HpyAV CCTTC 6 cut(s) 23, 528, 656, 663, 683, 1132
HpyCH4IV ACGT 4 cut(s) 552, 720, 783, 1117
HpyCH4V TGCA 9 cut(s) 130, 143, 515, 532, 952, 1004, 1192, 1213, 1329
HpyF10VI GCNNNNNNNGC 3 cut(s) 112, 336, 958
HpyF3I CTNAG 5 cut(s) 122, 466, 930, 1164, 1323
HpySE526I ACGT 4 cut(s) 552, 720, 783, 1117
Hsp92I GRCGYC 2 cut(s) 672, 980
Hsp92II CATG 4 cut(s) 158, 330, 339, 706
HspAI GCGC 4 cut(s) 297, 414, 431, 980
KasI GGCGCC 1 cut(s) 979
Ksp22I TGATCA 2 cut(s) 750, 873
Kzo9I GATC 5 cut(s) 750, 873, 1173, 1179, 1219
LmnI GCTCC 2 cut(s) 344, 1099
Lsp1109I GCAGC 4 cut(s) 936, 1032, 1035, 1197
LweI GCATC 2 cut(s) 130, 991
MaeI CTAG 8 cut(s) 300, 345, 572, 605, 1041, 1058, 1136, 1269
MaeII ACGT 4 cut(s) 552, 720, 783, 1117
MaeIII GTNAC 4 cut(s) 263, 400, 540, 925
MalI GATC 5 cut(s) 752, 875, 1175, 1181, 1221
MboI GATC 5 cut(s) 750, 873, 1173, 1179, 1219
MboII GAAGA 4 cut(s) 25, 41, 143, 1325
MhlI GDGCHC 2 cut(s) 517, 1331
MluCI AATT 8 cut(s) 19, 165, 191, 235, 497, 585, 632, 1249
MluI ACGCGT 2 cut(s) 372, 404
Mly113I GGCGCC 1 cut(s) 980
MmeI TCCRAC 2 cut(s) 546, 1176
MseI TTAA 1 cut(s) 227
MslI CAYNNNNRTG 1 cut(s) 719
MspA1I CMGCKG 1 cut(s) 949
MspI CCGG 2 cut(s) 474, 1017
MspR9I CCNGG 2 cut(s) 474, 1264
MvaI CCWGG 1 cut(s) 1264
MvnI CGCG 2 cut(s) 374, 406
MwoI GCNNNNNNNGC 3 cut(s) 112, 336, 958
NarI GGCGCC 1 cut(s) 980
NciI CCSGG 1 cut(s) 474
NdeII GATC 5 cut(s) 750, 873, 1173, 1179, 1219
NlaIII CATG 4 cut(s) 158, 330, 339, 706
NlaIV GGNNCC 3 cut(s) 362, 472, 981
NmuCI GTSAC 2 cut(s) 400, 925
NsbI TGCGCA 1 cut(s) 432
NspI RCATGY 2 cut(s) 330, 339
PagI TCATGA 1 cut(s) 702
PfeI GAWTC 2 cut(s) 1011, 1316
PflFI GACNNNGTC 1 cut(s) 1052
PkrI GCNGC 7 cut(s) 70, 332, 951, 1022, 1025, 1033, 1212
Ple19I CGATCG 1 cut(s) 1176
PluTI GGCGCC 1 cut(s) 983
PpuMI RGGWCCY 2 cut(s) 470, 692
Psp1406I AACGTT 2 cut(s) 552, 783
Psp5II RGGWCCY 2 cut(s) 470, 692
Psp6I CCWGG 1 cut(s) 1262
PspEI GGTNACC 1 cut(s) 540
PspGI CCWGG 1 cut(s) 1262
PspN4I GGNNCC 3 cut(s) 362, 472, 981
PspPI GGNCC 6 cut(s) 25, 160, 470, 476, 484, 692
PspPPI RGGWCCY 2 cut(s) 470, 692
PstI CTGCAG 1 cut(s) 1215
PsyI GACNNNGTC 1 cut(s) 1052
PvuI CGATCG 1 cut(s) 1176
PvuII CAGCTG 1 cut(s) 949
RsaI GTAC 2 cut(s) 773, 1276
RsaNI GTAC 2 cut(s) 772, 1275
RseI CAYNNNNRTG 1 cut(s) 719
SaqAI TTAA 1 cut(s) 227
SatI GCNGC 7 cut(s) 69, 331, 950, 1021, 1024, 1032, 1211
Sau3AI GATC 5 cut(s) 750, 873, 1173, 1179, 1219
Sau96I GGNCC 6 cut(s) 25, 160, 470, 476, 484, 692
ScaI AGTACT 1 cut(s) 773
ScrFI CCNGG 2 cut(s) 474, 1264
SduI GDGCHC 2 cut(s) 517, 1331
SfaNI GCATC 2 cut(s) 130, 991
SfcI CTRYAG 1 cut(s) 1211
SfoI GGCGCC 1 cut(s) 981
SinI GGWCC 4 cut(s) 25, 470, 484, 692
SmiMI CAYNNNNRTG 1 cut(s) 719
SmlI CTYRAG 1 cut(s) 1231
SmoI CTYRAG 1 cut(s) 1231
SpeI ACTAGT 1 cut(s) 1268
Sse9I AATT 8 cut(s) 19, 165, 191, 235, 497, 585, 632, 1249
SsiI CCGC 4 cut(s) 68, 331, 1032, 1152
SspDI GGCGCC 1 cut(s) 979
SspMI CTAG 8 cut(s) 300, 345, 572, 605, 1041, 1058, 1136, 1269
StyD4I CCNGG 2 cut(s) 472, 1262
StyI CCWWGG 2 cut(s) 417, 460
TaiI ACGT 4 cut(s) 555, 723, 786, 1120
TaqI TCGA 4 cut(s) 287, 717, 999, 1172
TaqII GACCGA 1 cut(s) 678
TasI AATT 8 cut(s) 19, 165, 191, 235, 497, 585, 632, 1249
TatI WGTACW 1 cut(s) 771
TauI GCSGC 3 cut(s) 71, 333, 1034
TfiI GAWTC 2 cut(s) 1011, 1316
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TscAI CASTG 3 cut(s) 753, 1309, 1336
TseFI GTSAC 2 cut(s) 400, 925
TseI GCWGC 4 cut(s) 949, 1020, 1023, 1210
Tsp45I GTSAC 2 cut(s) 400, 925
TspDTI ATGAA 6 cut(s) 49, 143, 645, 691, 719, 1114
TspRI CASTG 3 cut(s) 753, 1309, 1336
Tth111I GACNNNGTC 1 cut(s) 1052
VneI GTGCAC 2 cut(s) 513, 1327
VpaK11BI GGWCC 4 cut(s) 25, 470, 484, 692
XapI RAATTY 2 cut(s) 165, 632
XbaI TCTAGA 1 cut(s) 344
XceI RCATGY 2 cut(s) 330, 339
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XspI CTAG 8 cut(s) 300, 345, 572, 605, 1041, 1058, 1136, 1269
ZrmI AGTACT 1 cut(s) 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.